FvH4_1g24200

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015813
Physical Location & Seq
Forward (+)
16079514 .. 16086697
7184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24200.t2

Sequence Viewer

Length: 1488 bp
ATGGCACGGAGAGGCTATTCCAGACCCAGATTTCCGTCCCCACACCCCATTAAAATCAACCTAATCCTCATTTTTGCTTTCTTCTTTTTGGTCTTCATCTTCCACTCAAGGCAATGGCATCTCCCCGACGATGAACAAAAGCAACAAACTTTCTTCCACAATGGTTCCCAAACTGATCAGATGGCAGATGCAGACCTTTGGGATGCTCCTCATAGCTACGGTTTACGCCCGTGTGTCAAGCCAACTTCTAGATATAAAGCTGCCACTGGATGGGACCACTACATGACTGTGAGAAGTAATGGAGGACTAAATCAGATGCGAACAGGCATTGCAGACGTGGTGGCTGTGGCACGCATTATGAATGCAACCTTGGTCATTCCTCAATTGGATAAACGTTCATTCTGGCATGACTCAAGTACATTTTCAGATATATTTGATGAAATTCACTTCATTGAAACTCTACGAGAAGATGTCAAGATTGTCAAGGAGCTCCCACTGGAATTGGCGAATGTTCCTCGTGCCAGGAAGCATTTCACGTCCTGGGCTAGCACCAGTTACTACGAAGACATGACACAGCTATGGAAAGAATATCAGGTGATTCATGTTGCAAAGTCAGATTCTCGACTTGCAAACAATGATCTTCCTCTTGATATCCAGAGGTTGAGATGCCGTGCCTTATATCATGCACTCCGTTTCTCTCCCCCAATTGAGAGCTTTGGAAAGAAGCTGGTGGAGCGGCTTAGAGCACGTGGGGGAAAATATATTGCTCTTCATTTGAGATATGAGAAAGACATGTTGTCTTTTACTGGTTGTTCCTATGGTTTGACTGAGGAGGAATCTGAGGAGCTACGAATAATGAGGGAGAACACAAATCACTGGAAAGTCAAAACGATTAACTCTACTGAGCAGAGACTAGGTGGCTTCTGTCCACTAACTCCGAAGGAGATCGGCATATTTCTTCGAGCTCTCGGTTATCCACCATCATCGTTAATATATATTGCAGCGGGGGAGATCTATGGTGGTAATACTCGCCTTTTGGAGCTCACATCCCGTTTTCCAAATATAGTTTTCAAGGAAACACTTGCGAGCCAGGAGGAACTAAAGGCATTTACTAATCATGCATCTCAAACTGCTGCTCTTGATTATGTGATCTCAGTCAAAAGTGATGTGTTTGTCCCATCATATTCTGGTAACATGGCAAGAGCTGTTGAGGGCCAACGCAGATTCTTAGGTCATCGCAAAACGATCACTCCAGATAGGAAAGGACTTGTTGAAGTTTTCGATATGCTGGAAAATGGGCAACAAACAGAAGGATCTTCGTTATCACATATTATAAAGACCATGCACAAAAATAGGAAAGGAGCTCCAAGGAGGAGAAGAGGGCCACTGCCAGAAATGAAAGGTCGAGCACGATTAAGAACTGAAGAATCCTTTTATGAAAACCCTTACCCCGAGTGTATATGTGCCCCGAAAAAGCACTTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

496

Amino Acids

56.98

Weight (kDa)

9.42

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 94 - 409 2.1e-104 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64600
fragaria_vesca FvH4_1g24200 FvH4_1g24200 FvH4_1g24200
rosa_chinensis RchiOBHm_Chr2g0120631 RchiOBHm_Chr2g0120641
rosa_laevigata RLG00000018563
rosa_multiflora Rmu_sc0001844.1_g000005
rosa_roxburghii Rroxscaffold_2G00123270
rosa_rugosa Rorug02G0230000
rosa_samantha Rh2AG286000 Rh2BG297800 Rh2CG275500 Rh2DG311500
rosa_wichuraiana Rw2G022970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1334
AccB7I CCANNNNNTGG 1 cut(s) 270
AccBSI CCGCTC 1 cut(s) 736
AciI CCGC 2 cut(s) 736, 1004
AclI AACGTT 1 cut(s) 394
AclWI GGATC 1 cut(s) 1321
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 1443
AcvI CACGTG 1 cut(s) 749
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 3 cut(s) 455, 1072, 1274
AhdI GACNNNNNGTC 1 cut(s) 796
AjiI CACGTC 2 cut(s) 337, 537
AjnI CCWGG 3 cut(s) 521, 539, 1089
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
Alw21I GWGCWC 6 cut(s) 492, 748, 967, 1044, 1366, 1411
Alw26I GTCTC 1 cut(s) 904
AlwI GGATC 1 cut(s) 1321
Ama87I CYCGRG 1 cut(s) 1451
AoxI GGCC 2 cut(s) 1213, 1382
ApeKI GCWGC 3 cut(s) 260, 1001, 1133
ApoI RAATTY 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 530
AspS9I GGNCC 3 cut(s) 274, 1213, 1382
AsuHPI GGTGA 1 cut(s) 607
AsuNHI GCTAGC 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 1451
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 1468
BanII GRGCYC 4 cut(s) 492, 967, 1044, 1366
BauI CACGAG 1 cut(s) 516
BbrPI CACGTG 1 cut(s) 749
BbsI GAAGAC 2 cut(s) 85, 570
Bbv12I GWGCWC 6 cut(s) 492, 748, 967, 1044, 1366, 1411
BbvI GCAGC 3 cut(s) 247, 1013, 1120
BccI CCATC 4 cut(s) 175, 264, 988, 1186
BceAI ACGGC 1 cut(s) 654
BciT130I CCWGG 3 cut(s) 523, 541, 1091
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 3 cut(s) 249, 546, 914
BglII AGATCT 1 cut(s) 1011
BisI GCNGC 4 cut(s) 261, 737, 1002, 1134
BlsI GCNGC 4 cut(s) 262, 738, 1003, 1135
Bme1390I CCNGG 3 cut(s) 523, 541, 1091
Bme18I GGWCC 1 cut(s) 274
BmeRI GACNNNNNGTC 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 1451
BmgBI CACGTC 2 cut(s) 337, 537
BmgT120I GGNCC 3 cut(s) 274, 1213, 1382
BmiI GGNNCC 2 cut(s) 166, 275
BmrFI CCNGG 3 cut(s) 523, 541, 1091
BmsI GCATC 6 cut(s) 127, 178, 193, 306, 656, 1130
BmtI GCTAGC 1 cut(s) 549
BpiI GAAGAC 2 cut(s) 85, 570
BpmI CTGGAG 1 cut(s) 1236
BpuEI CTTGAG 2 cut(s) 91, 397
BsaAI YACGTR 1 cut(s) 749
BsaJI CCNNGG 3 cut(s) 369, 540, 1367
BsaXI ACNNNNNCTCC 2 cut(s) 1234, 1264
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse1I ACTGG 5 cut(s) 271, 501, 552, 811, 881
Bse3DI GCAATG 2 cut(s) 119, 327
BseBI CCWGG 3 cut(s) 523, 541, 1091
BseDI CCNNGG 3 cut(s) 369, 540, 1367
BseGI GGATG 3 cut(s) 208, 275, 1046
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 2 cut(s) 119, 327
BseMII CTCAG 4 cut(s) 819, 831, 894, 1167
BseNI ACTGG 5 cut(s) 271, 501, 552, 811, 881
BseRI GAGGAG 4 cut(s) 198, 845, 857, 1387
BseSI GKGCMC 1 cut(s) 1468
BseXI GCAGC 3 cut(s) 247, 1013, 1120
BshFI GGCC 2 cut(s) 1215, 1384
BsiHKAI GWGCWC 6 cut(s) 492, 748, 967, 1044, 1366, 1411
BsiHKCI CYCGRG 1 cut(s) 1451
BslFI GGGAC 3 cut(s) 22, 287, 1160
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 904
BsmFI GGGAC 3 cut(s) 22, 287, 1160
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 1215, 1384
BsoBI CYCGRG 1 cut(s) 1451
Bsp1286I GDGCHC 7 cut(s) 492, 748, 967, 1044, 1366, 1411, 1468
Bsp143I GATC 7 cut(s) 175, 637, 945, 1011, 1149, 1245, 1313
BspACI CCGC 2 cut(s) 736, 1004
BspANI GGCC 2 cut(s) 1215, 1384
BspCNI CTCAG 4 cut(s) 820, 832, 895, 1166
BspLI GGNNCC 2 cut(s) 166, 275
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 1 cut(s) 1321
BspQI GCTCTTC 1 cut(s) 774
BsrBI CCGCTC 1 cut(s) 736
BsrDI GCAATG 2 cut(s) 119, 327
BsrI ACTGG 5 cut(s) 271, 501, 552, 811, 881
BssECI CCNNGG 3 cut(s) 369, 540, 1367
BssMI GATC 7 cut(s) 175, 637, 945, 1011, 1149, 1245, 1313
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 369, 1367
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 3 cut(s) 523, 541, 1091
Bst4CI ACNGT 2 cut(s) 221, 289
Bst6I CTCTTC 2 cut(s) 774, 1372
BstBAI YACGTR 1 cut(s) 749
BstC8I GCNNGC 3 cut(s) 352, 547, 1087
BstDEI CTNAG 7 cut(s) 740, 828, 840, 903, 1153, 1228, 1480
BstF5I GGATG 3 cut(s) 208, 275, 1046
BstKTI GATC 7 cut(s) 178, 640, 948, 1014, 1152, 1248, 1316
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 7 cut(s) 175, 637, 945, 1011, 1149, 1245, 1313
BstMWI GCNNNNNNNGC 1 cut(s) 733
BstNI CCWGG 3 cut(s) 523, 541, 1091
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 3 cut(s) 521, 539, 1089
BstSLI GKGCMC 1 cut(s) 1468
BstV1I GCAGC 3 cut(s) 247, 1013, 1120
BstV2I GAAGAC 2 cut(s) 85, 570
BstX2I RGATCY 2 cut(s) 1011, 1313
BstYI RGATCY 2 cut(s) 1011, 1313
BsuRI GGCC 2 cut(s) 1215, 1384
BtgZI GCGATG 1 cut(s) 1220
BtrI CACGTC 2 cut(s) 337, 537
BtsCI GGATG 3 cut(s) 208, 275, 1046
BtsI GCAGTG 1 cut(s) 1385
BtsIMutI CAGTG 4 cut(s) 264, 494, 874, 1385
Cac8I GCNNGC 3 cut(s) 352, 547, 1087
Cfr13I GGNCC 3 cut(s) 274, 1213, 1382
Csp6I GTAC 1 cut(s) 417
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 9 cut(s) 283, 407, 568, 602, 683, 793, 1118, 1195, 1342
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 7 cut(s) 740, 828, 840, 903, 1153, 1228, 1480
DpnI GATC 7 cut(s) 177, 639, 947, 1013, 1151, 1247, 1315
DpnII GATC 7 cut(s) 175, 637, 945, 1011, 1149, 1245, 1313
DriI GACNNNNNGTC 1 cut(s) 796
Eam1104I CTCTTC 2 cut(s) 774, 1372
Eam1105I GACNNNNNGTC 1 cut(s) 796
EarI CTCTTC 2 cut(s) 774, 1372
Ecl136II GAGCTC 4 cut(s) 490, 965, 1042, 1364
Eco130I CCWWGG 2 cut(s) 369, 1367
Eco24I GRGCYC 4 cut(s) 492, 967, 1044, 1366
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 274
Eco53kI GAGCTC 4 cut(s) 490, 965, 1042, 1364
Eco57I CTGAAG 1 cut(s) 1443
Eco72I CACGTG 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 1451
EcoICRI GAGCTC 4 cut(s) 490, 965, 1042, 1364
EcoRII CCWGG 3 cut(s) 521, 539, 1089
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 369, 1367
EcoT22I ATGCAT 1 cut(s) 1123
EcoT38I GRGCYC 4 cut(s) 492, 967, 1044, 1366
ErhI CCWWGG 2 cut(s) 369, 1367
FaeI CATG 9 cut(s) 286, 410, 571, 605, 686, 796, 1121, 1198, 1345
FaqI GGGAC 3 cut(s) 22, 287, 1160
FatI CATG 9 cut(s) 282, 406, 567, 601, 682, 792, 1117, 1194, 1341
FauI CCCGC 1 cut(s) 997
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 261, 737, 1002, 1134
FokI GGATG 3 cut(s) 215, 282, 1033
FriOI GRGCYC 4 cut(s) 492, 967, 1044, 1366
Fsp4HI GCNGC 4 cut(s) 261, 737, 1002, 1134
FspBI CTAG 3 cut(s) 249, 546, 914
GluI GCNGC 4 cut(s) 261, 737, 1002, 1134
GsuI CTGGAG 1 cut(s) 1236
HaeIII GGCC 2 cut(s) 1215, 1384
Hin1II CATG 9 cut(s) 286, 410, 571, 605, 686, 796, 1121, 1198, 1345
HinfI GANTC 6 cut(s) 410, 598, 617, 836, 1224, 1427
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 2 cut(s) 224, 929
Hpy188I TCNGA 6 cut(s) 180, 315, 427, 616, 841, 939
Hpy188III TCNNGA 8 cut(s) 21, 249, 475, 621, 647, 655, 1139, 1253
Hpy8I GTNNAC 2 cut(s) 224, 929
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 934, 1304
HpyCH4III ACNGT 2 cut(s) 221, 289
HpyCH4IV ACGT 4 cut(s) 336, 394, 536, 748
HpyCH4V TGCA 9 cut(s) 191, 332, 365, 608, 629, 686, 1001, 1121, 1345
HpyF10VI GCNNNNNNNGC 1 cut(s) 733
HpyF3I CTNAG 7 cut(s) 740, 828, 840, 903, 1153, 1228, 1480
HpySE526I ACGT 4 cut(s) 336, 394, 536, 748
Hsp92II CATG 9 cut(s) 286, 410, 571, 605, 686, 796, 1121, 1198, 1345
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 7 cut(s) 175, 637, 945, 1011, 1149, 1245, 1313
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 8 cut(s) 211, 487, 495, 733, 844, 1039, 1361, 1369
Lsp1109I GCAGC 3 cut(s) 247, 1013, 1120
LweI GCATC 6 cut(s) 127, 178, 193, 306, 656, 1130
MaeI CTAG 3 cut(s) 249, 546, 914
MaeII ACGT 4 cut(s) 336, 394, 536, 748
MaeIII GTNAC 2 cut(s) 554, 1190
MalI GATC 7 cut(s) 177, 639, 947, 1013, 1151, 1247, 1315
MbiI CCGCTC 1 cut(s) 736
MboI GATC 7 cut(s) 175, 637, 945, 1011, 1149, 1245, 1313
MfeI CAATTG 2 cut(s) 383, 705
MflI RGATCY 2 cut(s) 1011, 1313
MhlI GDGCHC 7 cut(s) 492, 748, 967, 1044, 1366, 1411, 1468
MluCI AATT 4 cut(s) 383, 441, 500, 705
MlyI GAGTC 1 cut(s) 404
Mph1103I ATGCAT 1 cut(s) 1123
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 4 cut(s) 51, 894, 989, 1415
MslI CAYNNNNRTG 2 cut(s) 287, 577
MspA1I CMGCKG 1 cut(s) 1004
MspR9I CCNGG 3 cut(s) 523, 541, 1091
MunI CAATTG 2 cut(s) 383, 705
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 3 cut(s) 523, 541, 1091
MwoI GCNNNNNNNGC 1 cut(s) 733
NdeII GATC 7 cut(s) 175, 637, 945, 1011, 1149, 1245, 1313
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 9 cut(s) 286, 410, 571, 605, 686, 796, 1121, 1198, 1345
NlaIV GGNNCC 2 cut(s) 166, 275
NsiI ATGCAT 1 cut(s) 1123
NspI RCATGY 1 cut(s) 796
PciI ACATGT 1 cut(s) 792
PciSI GCTCTTC 1 cut(s) 774
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 5 cut(s) 598, 617, 836, 1224, 1427
PflMI CCANNNNNTGG 1 cut(s) 270
PkrI GCNGC 4 cut(s) 262, 738, 1003, 1135
PleI GAGTC 1 cut(s) 404
PmaCI CACGTG 1 cut(s) 749
PmlI CACGTG 1 cut(s) 749
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 749
PscI ACATGT 1 cut(s) 792
PsiI TTATAA 1 cut(s) 1334
Psp124BI GAGCTC 4 cut(s) 492, 967, 1044, 1366
Psp1406I AACGTT 1 cut(s) 394
Psp6I CCWGG 3 cut(s) 521, 539, 1089
PspCI CACGTG 1 cut(s) 749
PspGI CCWGG 3 cut(s) 521, 539, 1089
PspN4I GGNNCC 2 cut(s) 166, 275
PspPI GGNCC 3 cut(s) 274, 1213, 1382
PsuI RGATCY 2 cut(s) 1011, 1313
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 2 cut(s) 287, 577
SacI GAGCTC 4 cut(s) 492, 967, 1044, 1366
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 4 cut(s) 51, 894, 989, 1415
SatI GCNGC 4 cut(s) 261, 737, 1002, 1134
Sau3AI GATC 7 cut(s) 175, 637, 945, 1011, 1149, 1245, 1313
Sau96I GGNCC 3 cut(s) 274, 1213, 1382
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 3 cut(s) 523, 541, 1091
SduI GDGCHC 7 cut(s) 492, 748, 967, 1044, 1366, 1411, 1468
SfaNI GCATC 6 cut(s) 127, 178, 193, 306, 656, 1130
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 287, 577
SmlI CTYRAG 2 cut(s) 106, 412
SmoI CTYRAG 2 cut(s) 106, 412
Sse9I AATT 4 cut(s) 383, 441, 500, 705
SsiI CCGC 2 cut(s) 736, 1004
SspMI CTAG 3 cut(s) 249, 546, 914
SstI GAGCTC 4 cut(s) 492, 967, 1044, 1366
StyD4I CCNGG 3 cut(s) 521, 539, 1089
StyI CCWWGG 2 cut(s) 369, 1367
TaaI ACNGT 2 cut(s) 221, 289
TaiI ACGT 4 cut(s) 339, 397, 539, 751
TaqI TCGA 4 cut(s) 622, 961, 1281, 1405
TasI AATT 4 cut(s) 383, 441, 500, 705
TatI WGTACW 1 cut(s) 416
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 5 cut(s) 598, 617, 836, 1224, 1427
Tru1I TTAA 4 cut(s) 51, 894, 989, 1415
Tru9I TTAA 4 cut(s) 51, 894, 989, 1415
TscAI CASTG 4 cut(s) 271, 501, 881, 1392
TseI GCWGC 3 cut(s) 260, 1001, 1133
TspGWI ACGGA 3 cut(s) 22, 24, 680
TspRI CASTG 4 cut(s) 271, 501, 881, 1392
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 441
XbaI TCTAGA 1 cut(s) 248
XceI RCATGY 1 cut(s) 796
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 3 cut(s) 249, 546, 914
Zsp2I ATGCAT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.