Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008475

Physical Location & Seq

Genomic Coordinates Reverse (-)

16369408 .. 16376909

Gene Structure 7502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24540.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGAAAGGTGGATTCAACTATAACATGATGGGGAGATTAGTCTCTGTCACTCTGACTGCCCTTGTATGTACAACCATACTACTTTGGGCTTGGGAGAAAAATCCTTTTGCGGATACTCTACTACTGGCCCGAGAACGGTTTCCAATTCCTTCAATAGATTTTCTGGAGGACTCCCCAAAGAATTCCTCAAAGTCTACGAAGACAGACAGGAATATTCAAGGGAAGGATATAGAAGAAACAAACAAAATACAAAATTCTGGTGCTGCACCAATTCAAGGGAAGGATACACCTTCTGCTACAATAGATGAAACAAAGAAAATAGAAAACTCTGGTGTTGCACCAACAGATTATGCATTTTCTCCTATAATGGACGGGCATAATCTGAATGCAACATCTACTGACCAACGTAAAGTCTGTAATTTTGCCAAGGGTAGATGGATTCCAGACATCAGGCGACCATTGTATTCTGGGTTTCATTGTAAGCAATGGTTATCAGCAATGTGGGCTTGCAGACTGACACAACGACCAGATTTCTCTTTTGAGGGATACCGGTGGAAGCCAGACAGTTGTGAAATGCCAGACTTCGAGCGATCTTCATTCTTGAGAAGAATGCAGGACAAGACAATTGCTTTTATAGGAGATTCTTTGGGCCGACAGCAGTTCCAGTCTTTAATGTGTATGGCTACTGGTGGAGAAGAAAGCCTAGAAGTTCAAAATGTGGGAAAAGAATATGGCCTTGTCAAACGTCGTGGAGCCATTCGTCCTGATGGCTGGGCCTATAGATTTCCTAAGACCAATACCACCATTTTGTATTACTGGTCGGCCAGCCTCTGTGACCTTGTGCCACTTAACAGCTCAAACCGAACCACTGATGTTGCGATGCATTTGGACCGTCCCCCAGCTTTCATGAGGCAGTACCTTGATAGATTTGATGTGTTGGTTCTTAATACTGGGCATCATTGGAACAGGGGGAAAATAAATGGAAATCGGTGGGTAATGTATGTAGATGGAAAACCCAATCAAGATAAAAGGCGTGCACAAATTGACAGAGCGAAGAATTTTACCATACATAGTGTTGTCAGGTGGCTTGATTCACAACTTCCATCACATCCCCACCTCAAAACATTCTTCAGGACCATCTCACCAAGGCATTTCTTTAATGGTGACTGGAATACCGGGGGATCTTGTGATAATACTACTCCGTTGTCTGGAGGAAGTGAAGTGGTCCAAGAAGGGTCAAGTGATGTAGTCATTGAGGCTGCTTTGAGAGGTACAAAGACAAAGATTCTGGACATCACTGCTCTTTCTCAATTGAGGGATGAAGGTCACGTATCCCGCTACACCATTAGAGGTACTGCTGCTGGAAATGATTGCTTGCACTGGTGCCTACCTGGAATTCCAGACACATGGAATGAACTCCTTATTGCACAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

479

Amino Acids

54.2

Weight (kDa)

8.89

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	16 - 69	7.1e-15	PMR5 N terminal Domain
PC-Esterase	PF13839	70 - 354	3.5e-75	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64020
fragaria_vesca	FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540
malus_domestica	MD01G1006300.v1.1 MD15G1134400.v1.1
prunus_persica	Prupe.4G274000_v2.0.a1 Prupe.4G274000_v2.0.a1
pyrus_communis	pycom15g12100
rosa_chinensis	RchiOBHm_Chr2g0121951
rosa_laevigata	RLG00000018636
rosa_multiflora	Rmu_sc0003880.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122190
rosa_rugosa	Rorug02G0235000
rosa_samantha	Rh2AG292100 Rh2BG302300 Rh2CG281100 Rh2DG316300
rosa_wichuraiana	Rw2G023420 Rw2G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1383
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	2 cut(s)	110, 1336
AclWI	GGATC	1 cut(s)	1189
AcoI	YGGCCR	1 cut(s)	822
AcsI	RAATTY	4 cut(s)	181, 253, 1057, 1395
AcuI	CTGAAG	1 cut(s)	1114
AfaI	GTAC	4 cut(s)	70, 917, 1273, 1354
AfiI	CCNNNNNNNGG	3 cut(s)	135, 275, 1208
AgeI	ACCGGT	1 cut(s)	549
AgsI	TTSAA	5 cut(s)	16, 153, 218, 275, 713
AjnI	CCWGG	1 cut(s)	1390
AluBI	AGCT	2 cut(s)	855, 902
AluI	AGCT	2 cut(s)	855, 902
Alw21I	GWGCWC	1 cut(s)	1039
Alw26I	GTCTC	1 cut(s)	46
Alw44I	GTGCAC	1 cut(s)	1035
AlwI	GGATC	1 cut(s)	1189
AlwNI	CAGNNNCTG	1 cut(s)	831
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	5 cut(s)	126, 649, 733, 774, 822
ApaLI	GTGCAC	1 cut(s)	1035
ApeKI	GCWGC	3 cut(s)	263, 1259, 1358
ApoI	RAATTY	4 cut(s)	181, 253, 1057, 1395
AsiGI	ACCGGT	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	6 cut(s)	127, 649, 774, 889, 1134, 1225
AsuC2I	CCSGG	1 cut(s)	1177
AsuHPI	GGTGA	2 cut(s)	1134, 1175
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	3 cut(s)	889, 1134, 1225
BaeGI	GKGCMC	1 cut(s)	1039
BanI	GGYRCC	1 cut(s)	1383
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	1039
BbvI	GCAGC	3 cut(s)	250, 1246, 1345
BccI	CCATC	6 cut(s)	22, 429, 761, 1001, 1111, 1145
BciT130I	CCWGG	1 cut(s)	1392
BciVI	GTATCC	4 cut(s)	106, 277, 539, 1342
BcnI	CCSGG	1 cut(s)	1177
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	778
BfuI	GTATCC	4 cut(s)	106, 277, 539, 1342
BisI	GCNGC	3 cut(s)	264, 1260, 1359
BlsI	GCNGC	3 cut(s)	265, 1261, 1360
Bme1390I	CCNGG	2 cut(s)	1177, 1392
Bme18I	GGWCC	3 cut(s)	889, 1134, 1225
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	6 cut(s)	127, 649, 774, 889, 1134, 1225
BmiI	GGNNCC	2 cut(s)	754, 1385
BmrFI	CCNGG	2 cut(s)	1177, 1392
BmrI	ACTGGG	1 cut(s)	960
BmsI	GCATC	2 cut(s)	870, 964
BmuI	ACTGGG	1 cut(s)	960
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	2 cut(s)	185, 1230
BpuEI	CTTGAG	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	1177
BsaAI	YACGTR	1 cut(s)	1330
BsaJI	CCNNGG	3 cut(s)	426, 1145, 1176
BsaWI	WCCGGW	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 275, 1208
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	7 cut(s)	129, 664, 691, 821, 955, 1172, 1385
Bse3DI	GCAATG	2 cut(s)	491, 504
BseBI	CCWGG	1 cut(s)	1392
BseDI	CCNNGG	3 cut(s)	426, 1145, 1176
BseGI	GGATG	2 cut(s)	1108, 1324
BseLI	CCNNNNNNNGG	3 cut(s)	135, 275, 1208
BseMI	GCAATG	2 cut(s)	491, 504
BseNI	ACTGG	7 cut(s)	129, 664, 691, 821, 955, 1172, 1385
BseSI	GKGCMC	1 cut(s)	1039
BseXI	GCAGC	3 cut(s)	250, 1246, 1345
BseYI	CCCAGC	2 cut(s)	771, 898
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	5 cut(s)	128, 651, 735, 776, 824
BshNI	GGYRCC	1 cut(s)	1383
BshTI	ACCGGT	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	1039
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	550, 1176
BslFI	GGGAC	1 cut(s)	879
BslI	CCNNNNNNNGG	3 cut(s)	135, 275, 1208
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	879
BsmI	GAATGC	2 cut(s)	391, 615
BsnI	GGCC	5 cut(s)	128, 651, 735, 776, 824
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	1039
Bsp1407I	TGTACA	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	590, 1181
BspACI	CCGC	2 cut(s)	110, 1336
BspANI	GGCC	5 cut(s)	128, 651, 735, 776, 824
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	2 cut(s)	754, 1385
BspPI	GGATC	1 cut(s)	1189
BspT107I	GGYRCC	1 cut(s)	1383
BsrDI	GCAATG	2 cut(s)	491, 504
BsrFI	RCCGGY	1 cut(s)	549
BsrGI	TGTACA	1 cut(s)	68
BsrI	ACTGG	7 cut(s)	129, 664, 691, 821, 955, 1172, 1385
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	426, 1145, 1176
BssMI	GATC	2 cut(s)	590, 1181
BssT1I	CCWWGG	2 cut(s)	426, 1145
Bst2UI	CCWGG	1 cut(s)	1392
Bst4CI	ACNGT	3 cut(s)	138, 566, 893
BstAUI	TGTACA	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	1330
BstC8I	GCNNGC	4 cut(s)	508, 826, 1035, 1376
BstDEI	CTNAG	1 cut(s)	789
BstF5I	GGATG	2 cut(s)	1108, 1324
BstKTI	GATC	2 cut(s)	593, 1184
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	590, 1181
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	1392
BstSCI	CCNGG	2 cut(s)	1175, 1390
BstSFI	CTRYAG	1 cut(s)	778
BstSLI	GKGCMC	1 cut(s)	1039
BstV1I	GCAGC	3 cut(s)	250, 1246, 1345
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	1181
BstXI	CCANNNNNNTGG	1 cut(s)	1407
BstYI	RGATCY	1 cut(s)	1181
BsuI	GTATCC	4 cut(s)	106, 277, 539, 1342
BsuRI	GGCC	5 cut(s)	128, 651, 735, 776, 824
BtgZI	GCGATG	1 cut(s)	893
BtsCI	GGATG	2 cut(s)	1108, 1324
BtsI	GCAGTG	1 cut(s)	1296
BtsIMutI	CAGTG	3 cut(s)	867, 1296, 1378
Cac8I	GCNNGC	4 cut(s)	508, 826, 1035, 1376
CaiI	CAGNNNCTG	1 cut(s)	831
CciI	TCATGA	1 cut(s)	906
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	6 cut(s)	127, 649, 774, 889, 1134, 1225
Csp6I	GTAC	4 cut(s)	69, 916, 1272, 1353
CspAI	ACCGGT	1 cut(s)	549
CspCI	CAANNNNNGTGG	4 cut(s)	730, 765, 856, 891
CviAII	CATG	3 cut(s)	25, 907, 1407
CviQI	GTAC	4 cut(s)	69, 916, 1272, 1353
DdeI	CTNAG	1 cut(s)	789
DpnI	GATC	2 cut(s)	592, 1183
DpnII	GATC	2 cut(s)	590, 1181
EaeI	YGGCCR	1 cut(s)	822
Eco130I	CCWWGG	2 cut(s)	426, 1145
Eco47I	GGWCC	3 cut(s)	889, 1134, 1225
Eco57I	CTGAAG	1 cut(s)	1114
Eco88I	CYCGRG	1 cut(s)	129
EcoRI	GAATTC	2 cut(s)	181, 1395
EcoRII	CCWGG	1 cut(s)	1390
EcoT14I	CCWWGG	2 cut(s)	426, 1145
EcoT22I	ATGCAT	2 cut(s)	355, 885
ErhI	CCWWGG	2 cut(s)	426, 1145
FaeI	CATG	3 cut(s)	28, 910, 1410
FaqI	GGGAC	1 cut(s)	879
FatI	CATG	3 cut(s)	24, 906, 1406
FauI	CCCGC	1 cut(s)	1343
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	3 cut(s)	264, 1260, 1359
FokI	GGATG	2 cut(s)	1095, 1331
Fsp4HI	GCNGC	3 cut(s)	264, 1260, 1359
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	3 cut(s)	264, 1260, 1359
GsaI	CCCAGC	2 cut(s)	775, 902
GsuI	CTGGAG	2 cut(s)	185, 1230
HaeIII	GGCC	5 cut(s)	128, 651, 735, 776, 824
HapII	CCGG	2 cut(s)	550, 1176
Hin1II	CATG	3 cut(s)	28, 910, 1410
HinfI	GANTC	6 cut(s)	12, 170, 439, 641, 1091, 1285
HpaII	CCGG	2 cut(s)	550, 1176
HphI	GGTGA	2 cut(s)	1134, 1175
Hpy166II	GTNNAC	2 cut(s)	195, 1037
Hpy188I	TCNGA	2 cut(s)	54, 384
Hpy8I	GTNNAC	2 cut(s)	195, 1037
Hpy99I	CGWCG	1 cut(s)	750
HpyAV	CCTTC	6 cut(s)	159, 217, 274, 300, 1226, 1316
HpyCH4III	ACNGT	3 cut(s)	138, 566, 893
HpyCH4IV	ACGT	3 cut(s)	406, 745, 1329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	789
HpySE526I	ACGT	3 cut(s)	406, 745, 1329
Hsp92II	CATG	3 cut(s)	28, 910, 1410
Kzo9I	GATC	2 cut(s)	590, 1181
LmnI	GCTCC	1 cut(s)	752
Lsp1109I	GCAGC	3 cut(s)	250, 1246, 1345
LweI	GCATC	2 cut(s)	870, 964
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	3 cut(s)	406, 745, 1329
MaeIII	GTNAC	4 cut(s)	46, 833, 1163, 1325
MalI	GATC	2 cut(s)	592, 1183
MboI	GATC	2 cut(s)	590, 1181
MboII	GAAGA	7 cut(s)	211, 245, 585, 618, 707, 1066, 1120
MfeI	CAATTG	2 cut(s)	624, 1310
MflI	RGATCY	1 cut(s)	1181
MhlI	GDGCHC	1 cut(s)	1039
MlyI	GAGTC	1 cut(s)	164
Mph1103I	ATGCAT	2 cut(s)	355, 885
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	4 cut(s)	671, 849, 945, 1158
MspI	CCGG	2 cut(s)	550, 1176
MspR9I	CCNGG	2 cut(s)	1177, 1392
MunI	CAATTG	2 cut(s)	624, 1310
Mva1269I	GAATGC	2 cut(s)	391, 615
MvaI	CCWGG	1 cut(s)	1392
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	1 cut(s)	1177
NdeII	GATC	2 cut(s)	590, 1181
NlaIII	CATG	3 cut(s)	28, 910, 1410
NlaIV	GGNNCC	2 cut(s)	754, 1385
NmuCI	GTSAC	4 cut(s)	46, 833, 1163, 1325
NsiI	ATGCAT	2 cut(s)	355, 885
PagI	TCATGA	1 cut(s)	906
PctI	GAATGC	2 cut(s)	391, 615
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	5 cut(s)	12, 439, 641, 1091, 1285
PinAI	ACCGGT	1 cut(s)	549
PkrI	GCNGC	3 cut(s)	265, 1261, 1360
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	1330
Psp6I	CCWGG	1 cut(s)	1390
PspFI	CCCAGC	2 cut(s)	771, 898
PspGI	CCWGG	1 cut(s)	1390
PspN4I	GGNNCC	2 cut(s)	754, 1385
PspPI	GGNCC	6 cut(s)	127, 649, 774, 889, 1134, 1225
PstNI	CAGNNNCTG	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	1181
RsaI	GTAC	4 cut(s)	70, 917, 1273, 1354
RsaNI	GTAC	4 cut(s)	69, 916, 1272, 1353
SaqAI	TTAA	4 cut(s)	671, 849, 945, 1158
SatI	GCNGC	3 cut(s)	264, 1260, 1359
Sau3AI	GATC	2 cut(s)	590, 1181
Sau96I	GGNCC	6 cut(s)	127, 649, 774, 889, 1134, 1225
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	1177, 1392
SduI	GDGCHC	1 cut(s)	1039
SfaNI	GCATC	2 cut(s)	870, 964
SfcI	CTRYAG	1 cut(s)	778
SinI	GGWCC	3 cut(s)	889, 1134, 1225
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
SsiI	CCGC	2 cut(s)	110, 1336
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	2 cut(s)	1175, 1390
StyI	CCWWGG	2 cut(s)	426, 1145
TaaI	ACNGT	3 cut(s)	138, 566, 893
TaiI	ACGT	3 cut(s)	409, 748, 1332
TaqI	TCGA	1 cut(s)	585
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	5 cut(s)	12, 439, 641, 1091, 1285
Tru1I	TTAA	4 cut(s)	671, 849, 945, 1158
Tru9I	TTAA	4 cut(s)	671, 849, 945, 1158
TscAI	CASTG	3 cut(s)	874, 1303, 1385
TseFI	GTSAC	4 cut(s)	46, 833, 1163, 1325
TseI	GCWGC	3 cut(s)	263, 1259, 1358
Tsp45I	GTSAC	4 cut(s)	46, 833, 1163, 1325
TspDTI	ATGAA	7 cut(s)	17, 321, 464, 585, 895, 1335, 1428
TspGWI	ACGGA	1 cut(s)	1191
TspRI	CASTG	3 cut(s)	874, 1303, 1385
VneI	GTGCAC	1 cut(s)	1035
VpaK11BI	GGWCC	3 cut(s)	889, 1134, 1225
XapI	RAATTY	4 cut(s)	181, 253, 1057, 1395
XmiI	GTMKAC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	704
Zsp2I	ATGCAT	2 cut(s)	355, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.