Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008475

Physical Location & Seq

Genomic Coordinates Forward (+)

22807635 .. 22815689

Gene Structure 8055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G274000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAAAGGAGGATATAACTTTAGATTGATGGGAAAACCAATCTCTCTCACTCTGGCTGCCTTGGTTTGTACAACCATATTATTTTGGGCTTGGGAGAAAAATCCTTTTGCTGATACTCTACTACTGGCCCGGGAGCATTTTACAGTGCCTTCAATAGATTTTCTTGGAGACTCTGCAAATAATTCCTCAAAACCTATGAAGAAAAATGAAAGTGTTCAAGGGAAGGATTCACATTTGATCACAAATGAAGATACAAAAGTGGTAGAAAATTTTGGCACTGCACCAATAGATTCTATAGCCGCATTCTCTCCTGGAATGCAAGAAAGTGATGGGAACATGCAATCTTCTTTCCAGACTGAAGCGTGTAATTATGCCAAGGGTAGATGGGTTGCAGACAGCAGGCGGCCATTGTATTCTGGGTTGAAGTGTAAGCAGTGGTTATCAGAAATGTGGGCATGTAGACTAACACAACGAACAGATTTTTCTTTTGAGGGATACCGATGGAAGCCAATGAATTGTGAAATGCCAGACTTTGAGCGCTCTACCTTCTTGAGAAGAATGCAGGACAAAACAATTGCTTTTATAGGAGATTCATTGGGTCGACAGCAATTCCAATCTTTGATGTGTATGGCAAGTGGTGGTGAGGACAGCCCAGAAGTGCAGAATGTCGGAAAGGAATATGGCCTTGTCAAACGTCGTGGAGCCATCCGTCCTGATGGCTGGGCTTATCGATTCCCAGACACTAATACCACTATCTTATATTACTGGTCAGCAAGCCTCTGCGATCTGGTGCCCCTTAACATCTCGGACAAAGCCAGTGATATTGCAATGCATCTGGATCGTCCCCCGGCTTTCATGAGACAATTTCTTCATCGCTTTGATGTGCTTGTTCTTAATACTGGGCATCATTGGAACAGGGGAAAGATTAATGGAAACCGGTGGGTAATGTATGTAGATGGAAAGCCCAATGAAGATAAGAAGCGTGCAGAAATTGGGAATGCCAAGAATTTTACTGTGTACAGTGTTGTCAGGTGGGTTGATTCACAACTTCCATCGCATCCTCGCCTCAAAGCTTTCTTTCGGACTATCTCACCGAGGCATTTCTTTAACGGTGACTGGAATACTGGGGGTACCTGTGATAATACTACTCCATTGGCTGGAGGAAGTGAAGTGGTCCAAGAAGGATCAAGTGATTCAGTAATCGATGGTGCTTTGAAAGGTACAAAGATAAAGATTTTGGACATAACTGCTCTTTCTCAATTAAGGGATGAGGGTCACATATCGCACTACAGCATTAGAGGAAAAGGAAATGCCGGTATAAATGATTGCTTGCACTGGTGCCTACCTGGAATTCCAGACGCATGGAATGAACTCCTTGCTGCACAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

464

Amino Acids

52.15

Weight (kDa)

8.24

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64020
fragaria_vesca	FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540
malus_domestica	MD01G1006300.v1.1 MD15G1134400.v1.1
prunus_persica	Prupe.4G274000_v2.0.a1 Prupe.4G274000_v2.0.a1
pyrus_communis	pycom15g12100
rosa_chinensis	RchiOBHm_Chr2g0121951
rosa_laevigata	RLG00000018636
rosa_multiflora	Rmu_sc0003880.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122190
rosa_rugosa	Rorug02G0235000
rosa_samantha	Rh2AG292100 Rh2BG302300 Rh2CG281100 Rh2DG316300
rosa_wichuraiana	Rw2G023420 Rw2G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1130
AccB1I	GGYRCC	3 cut(s)	790, 1130, 1338
AccB7I	CCANNNNNTGG	1 cut(s)	1157
AccI	GTMKAC	2 cut(s)	460, 601
AciI	CCGC	2 cut(s)	300, 403
AclWI	GGATC	2 cut(s)	846, 1192
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	3 cut(s)	268, 1006, 1350
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	4 cut(s)	70, 1019, 1132, 1222
AfeI	AGCGCT	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	1157
AgeI	ACCGGT	1 cut(s)	936
AgsI	TTSAA	4 cut(s)	153, 218, 424, 1216
AjnI	CCWGG	2 cut(s)	310, 1345
AluBI	AGCT	1 cut(s)	1073
AluI	AGCT	1 cut(s)	1073
Alw26I	GTCTC	2 cut(s)	162, 853
AlwI	GGATC	2 cut(s)	846, 1192
Ama87I	CYCGRG	1 cut(s)	129
Aor51HI	AGCGCT	1 cut(s)	539
AoxI	GGCC	3 cut(s)	126, 404, 682
ApeKI	GCWGC	2 cut(s)	56, 1379
ApoI	RAATTY	3 cut(s)	268, 1006, 1350
AseI	ATTAAT	1 cut(s)	927
AsiGI	ACCGGT	1 cut(s)	936
Asp700I	GAANNNNTTC	1 cut(s)	213
Asp718I	GGTACC	1 cut(s)	1130
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	127, 1174
AsuC2I	CCSGG	3 cut(s)	130, 131, 848
AsuHPI	GGTGA	3 cut(s)	653, 1083, 1124
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	1174
BaeGI	GKGCMC	1 cut(s)	795
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BanI	GGYRCC	3 cut(s)	790, 1130, 1338
BbvI	GCAGC	2 cut(s)	43, 1366
BccI	CCATC	9 cut(s)	22, 323, 378, 495, 710, 713, 950, 1060, 1199
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciT130I	CCWGG	2 cut(s)	312, 1347
BciVI	GTATCC	1 cut(s)	488
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	3 cut(s)	130, 131, 848
BcoDI	GTCTC	2 cut(s)	162, 853
BfmI	CTRYAG	2 cut(s)	294, 1288
BfoI	RGCGCY	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	488
BisI	GCNGC	4 cut(s)	57, 300, 404, 1380
BlsI	GCNGC	4 cut(s)	58, 301, 405, 1381
Bme1390I	CCNGG	5 cut(s)	130, 131, 312, 848, 1347
Bme18I	GGWCC	1 cut(s)	1174
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	127, 1174
BmiI	GGNNCC	4 cut(s)	703, 792, 1132, 1340
BmrFI	CCNGG	5 cut(s)	130, 131, 312, 848, 1347
BmrI	ACTGGG	2 cut(s)	909, 1134
BmsI	GCATC	3 cut(s)	841, 913, 1066
BmuI	ACTGGG	2 cut(s)	909, 1134
BpmI	CTGGAG	1 cut(s)	1179
BpuEI	CTTGAG	1 cut(s)	571
BpuMI	CCSGG	3 cut(s)	130, 131, 848
Bsa29I	ATCGAT	2 cut(s)	730, 1203
BsaJI	CCNNGG	5 cut(s)	60, 129, 375, 846, 1094
BsaWI	WCCGGW	1 cut(s)	936
Bsc4I	CCNNNNNNNGG	1 cut(s)	1157
Bse118I	RCCGGY	2 cut(s)	936, 1313
Bse1I	ACTGG	7 cut(s)	129, 770, 816, 904, 1121, 1129, 1340
Bse3DI	GCAATG	1 cut(s)	834
BseBI	CCWGG	2 cut(s)	312, 1347
BseCI	ATCGAT	2 cut(s)	730, 1203
BseDI	CCNNGG	5 cut(s)	60, 129, 375, 846, 1094
BseGI	GGATG	3 cut(s)	705, 1057, 1273
BseLI	CCNNNNNNNGG	1 cut(s)	1157
BseMI	GCAATG	1 cut(s)	834
BseNI	ACTGG	7 cut(s)	129, 770, 816, 904, 1121, 1129, 1340
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	2 cut(s)	43, 1366
BseYI	CCCAGC	1 cut(s)	720
BsgI	GTGCAG	4 cut(s)	264, 680, 1005, 1365
BshFI	GGCC	3 cut(s)	128, 406, 684
BshNI	GGYRCC	3 cut(s)	790, 1130, 1338
BshTI	ACCGGT	1 cut(s)	936
BshVI	ATCGAT	2 cut(s)	730, 1203
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	4 cut(s)	130, 848, 937, 1314
BslFI	GGGAC	1 cut(s)	828
BslI	CCNNNNNNNGG	1 cut(s)	1157
BsmAI	GTCTC	2 cut(s)	162, 853
BsmFI	GGGAC	1 cut(s)	828
BsmI	GAATGC	4 cut(s)	302, 321, 564, 1003
BsnI	GGCC	3 cut(s)	128, 406, 684
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp1407I	TGTACA	2 cut(s)	68, 1017
Bsp143I	GATC	4 cut(s)	237, 784, 838, 1184
BspACI	CCGC	2 cut(s)	300, 403
BspANI	GGCC	3 cut(s)	128, 406, 684
BspDI	ATCGAT	2 cut(s)	730, 1203
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	4 cut(s)	703, 792, 1132, 1340
BspPI	GGATC	2 cut(s)	846, 1192
BspT107I	GGYRCC	3 cut(s)	790, 1130, 1338
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	2 cut(s)	936, 1313
BsrGI	TGTACA	2 cut(s)	68, 1017
BsrI	ACTGG	7 cut(s)	129, 770, 816, 904, 1121, 1129, 1340
BssAI	RCCGGY	2 cut(s)	936, 1313
BssECI	CCNNGG	5 cut(s)	60, 129, 375, 846, 1094
BssMI	GATC	4 cut(s)	237, 784, 838, 1184
BssT1I	CCWWGG	2 cut(s)	60, 375
Bst2UI	CCWGG	2 cut(s)	312, 1347
Bst4CI	ACNGT	4 cut(s)	145, 1015, 1022, 1112
BstAUI	TGTACA	2 cut(s)	68, 1017
BstC8I	GCNNGC	4 cut(s)	401, 775, 984, 1331
BstF5I	GGATG	3 cut(s)	705, 1057, 1273
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	4 cut(s)	240, 787, 841, 1187
BstMAI	GTCTC	2 cut(s)	162, 853
BstMBI	GATC	4 cut(s)	237, 784, 838, 1184
BstNI	CCWGG	2 cut(s)	312, 1347
BstNSI	RCATGY	2 cut(s)	340, 459
BstSCI	CCNGG	5 cut(s)	128, 129, 310, 846, 1345
BstSFI	CTRYAG	2 cut(s)	294, 1288
BstSLI	GKGCMC	1 cut(s)	795
BstV1I	GCAGC	2 cut(s)	43, 1366
BstXI	CCANNNNNNTGG	1 cut(s)	1362
Bsu15I	ATCGAT	2 cut(s)	730, 1203
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	128, 406, 684
BsuTUI	ATCGAT	2 cut(s)	730, 1203
BtgZI	GCGATG	2 cut(s)	857, 1038
BtsCI	GGATG	3 cut(s)	705, 1057, 1273
BtsI	GCAGTG	2 cut(s)	276, 440
BtsIMutI	CAGTG	6 cut(s)	150, 276, 440, 823, 1027, 1333
Cac8I	GCNNGC	4 cut(s)	401, 775, 984, 1331
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	1 cut(s)	540
Cfr10I	RCCGGY	2 cut(s)	936, 1313
Cfr13I	GGNCC	2 cut(s)	127, 1174
Cfr9I	CCCGGG	1 cut(s)	129
ClaI	ATCGAT	2 cut(s)	730, 1203
CseI	GACGC	1 cut(s)	1367
Csp6I	GTAC	4 cut(s)	69, 1018, 1131, 1221
CspAI	ACCGGT	1 cut(s)	936
CspCI	CAANNNNNGTGG	2 cut(s)	679, 714
CviAII	CATG	4 cut(s)	337, 456, 856, 1362
CviQI	GTAC	4 cut(s)	69, 1018, 1131, 1221
DpnI	GATC	4 cut(s)	239, 786, 840, 1186
DpnII	GATC	4 cut(s)	237, 784, 838, 1184
EaeI	YGGCCR	1 cut(s)	404
Eco130I	CCWWGG	2 cut(s)	60, 375
Eco47I	GGWCC	1 cut(s)	1174
Eco47III	AGCGCT	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	1350
EcoRII	CCWGG	2 cut(s)	310, 1345
EcoT14I	CCWWGG	2 cut(s)	60, 375
EcoT22I	ATGCAT	1 cut(s)	834
ErhI	CCWWGG	2 cut(s)	60, 375
FaeI	CATG	4 cut(s)	340, 459, 859, 1365
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	4 cut(s)	336, 455, 855, 1361
FbaI	TGATCA	1 cut(s)	237
FblI	GTMKAC	2 cut(s)	460, 601
Fnu4HI	GCNGC	4 cut(s)	57, 300, 404, 1380
FokI	GGATG	3 cut(s)	692, 1044, 1280
Fsp4HI	GCNGC	4 cut(s)	57, 300, 404, 1380
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	4 cut(s)	57, 300, 404, 1380
GsaI	CCCAGC	1 cut(s)	724
GsuI	CTGGAG	1 cut(s)	1179
HaeII	RGCGCY	1 cut(s)	541
HaeIII	GGCC	3 cut(s)	128, 406, 684
HapII	CCGG	4 cut(s)	130, 848, 937, 1314
HgaI	GACGC	1 cut(s)	1367
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	4 cut(s)	340, 459, 859, 1365
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	602
HindII	GTYRAC	1 cut(s)	602
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	7 cut(s)	170, 227, 290, 590, 732, 1040, 1193
HpaII	CCGG	4 cut(s)	130, 848, 937, 1314
HphI	GGTGA	3 cut(s)	653, 1083, 1124
Hpy166II	GTNNAC	3 cut(s)	461, 602, 1018
Hpy188I	TCNGA	4 cut(s)	445, 671, 808, 1083
Hpy188III	TCNNGA	6 cut(s)	352, 550, 713, 836, 856, 1355
Hpy8I	GTNNAC	3 cut(s)	461, 602, 1018
Hpy99I	CGWCG	1 cut(s)	699
HpyAV	CCTTC	4 cut(s)	159, 217, 556, 1175
HpyCH4III	ACNGT	4 cut(s)	145, 1015, 1022, 1112
HpyCH4IV	ACGT	1 cut(s)	694
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	4 cut(s)	340, 459, 859, 1365
HspAI	GCGC	1 cut(s)	538
KpnI	GGTACC	1 cut(s)	1134
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	4 cut(s)	237, 784, 838, 1184
LmnI	GCTCC	2 cut(s)	133, 701
Lsp1109I	GCAGC	2 cut(s)	43, 1366
LweI	GCATC	3 cut(s)	841, 913, 1066
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	2 cut(s)	1112, 1274
MalI	GATC	4 cut(s)	239, 786, 840, 1186
MboI	GATC	4 cut(s)	237, 784, 838, 1184
MboII	GAAGA	6 cut(s)	211, 260, 336, 567, 860, 983
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	795
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	649
Mph1103I	ATGCAT	1 cut(s)	834
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	5 cut(s)	798, 894, 927, 1107, 1262
MspI	CCGG	4 cut(s)	130, 848, 937, 1314
MspR9I	CCNGG	5 cut(s)	130, 131, 312, 848, 1347
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	4 cut(s)	302, 321, 564, 1003
MvaI	CCWGG	2 cut(s)	312, 1347
NciI	CCSGG	3 cut(s)	130, 131, 848
NdeII	GATC	4 cut(s)	237, 784, 838, 1184
NlaIII	CATG	4 cut(s)	340, 459, 859, 1365
NlaIV	GGNNCC	4 cut(s)	703, 792, 1132, 1340
NmuCI	GTSAC	2 cut(s)	1112, 1274
NsiI	ATGCAT	1 cut(s)	834
NspI	RCATGY	2 cut(s)	340, 459
PagI	TCATGA	1 cut(s)	855
PctI	GAATGC	4 cut(s)	302, 321, 564, 1003
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	6 cut(s)	227, 290, 590, 732, 1040, 1193
PflMI	CCANNNNNTGG	1 cut(s)	1157
PfoI	TCCNGGA	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	936
PkrI	GCNGC	4 cut(s)	58, 301, 405, 1381
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PshBI	ATTAAT	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	310, 1345
PspFI	CCCAGC	1 cut(s)	720
PspGI	CCWGG	2 cut(s)	310, 1345
PspN4I	GGNNCC	4 cut(s)	703, 792, 1132, 1340
PspPI	GGNCC	2 cut(s)	127, 1174
RsaI	GTAC	4 cut(s)	70, 1019, 1132, 1222
RsaNI	GTAC	4 cut(s)	69, 1018, 1131, 1221
SalI	GTCGAC	1 cut(s)	600
SaqAI	TTAA	5 cut(s)	798, 894, 927, 1107, 1262
SatI	GCNGC	4 cut(s)	57, 300, 404, 1380
Sau3AI	GATC	4 cut(s)	237, 784, 838, 1184
Sau96I	GGNCC	2 cut(s)	127, 1174
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	5 cut(s)	130, 131, 312, 848, 1347
SduI	GDGCHC	1 cut(s)	795
SetI	ASST	8 cut(s)	196, 548, 697, 1034, 1075, 1136, 1222, 1348
SfaNI	GCATC	3 cut(s)	841, 913, 1066
SfcI	CTRYAG	2 cut(s)	294, 1288
SinI	GGWCC	1 cut(s)	1174
SmaI	CCCGGG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SsiI	CCGC	2 cut(s)	300, 403
StyD4I	CCNGG	5 cut(s)	128, 129, 310, 846, 1345
StyI	CCWWGG	2 cut(s)	60, 375
TaaI	ACNGT	4 cut(s)	145, 1015, 1022, 1112
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	3 cut(s)	601, 730, 1203
TatI	WGTACW	2 cut(s)	68, 1017
TauI	GCSGC	2 cut(s)	302, 406
TfiI	GAWTC	6 cut(s)	227, 290, 590, 732, 1040, 1193
Tru1I	TTAA	5 cut(s)	798, 894, 927, 1107, 1262
Tru9I	TTAA	5 cut(s)	798, 894, 927, 1107, 1262
TscAI	CASTG	6 cut(s)	150, 283, 440, 823, 1027, 1340
TseFI	GTSAC	2 cut(s)	1112, 1274
TseI	GCWGC	2 cut(s)	56, 1379
Tsp45I	GTSAC	2 cut(s)	1112, 1274
TspGWI	ACGGA	1 cut(s)	698
TspMI	CCCGGG	1 cut(s)	129
TspRI	CASTG	6 cut(s)	150, 283, 440, 823, 1027, 1340
Van91I	CCANNNNNTGG	1 cut(s)	1157
VpaK11BI	GGWCC	1 cut(s)	1174
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	3 cut(s)	268, 1006, 1350
XceI	RCATGY	2 cut(s)	340, 459
XmaI	CCCGGG	1 cut(s)	129
XmiI	GTMKAC	2 cut(s)	460, 601
XmnI	GAANNNNTTC	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.