RLG00000018636

Protein trichome birefringence-like 14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008475
Physical Location & Seq
Reverse (-)
33110017 .. 33113653
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018636

Sequence Viewer

Length: 1509 bp
ATGAAAGGTGGATTTAACTATAAAATGCTGGGGAGACCAGTCTCTGTCACTTTGACTGCTCTTGTTTGTACAACCATATTACTTTTGGTTTGGGAGAAAAATCCTTTTGGGGATACTCTACTATTGGCCCGAGAACATTTTCCATTTCCTTCGATAGATTTTCTGGAGGACTCCTCAAAATCTTTGAAGACAGATGAGAATGTTCAAGGGAAGGATTCACCTTCTGTTATAATAGAAGAAGCAAAAGAAATTGAAAATTCTGGTACTGCACCAGTTCAAGGGAAGGGTTCACCTTCTATTATAATAGAAAAAACAAACAAAACACGAAATTCTGGTGCTGCACGAATTCAAGGGAATTCACCTTCTACTACAATAGAACAAACAAACAAAATAGAAAACTCTGGTGCTGCACCAACAGATTTTGCATCTTCTCCTAGAGTGCATGAACGTAATTCGAATGCGACATCTCCTTACCAACCTAAAGTCTGTAATTATGCCAAGGGTAGATGGATTCCAGACAGCAGGCGACCATTGTATTCTGGGTTTCATTGTAAGCAATGGTTATCAGCAATGTGGGCTTGCAGACTGACACAACGACCAGATTTCTCTTTTGAGGGATACCGTTGGAAGCCAGAAAGTTGTGAAATGCCAGAGTTCGAGCGATCTGCATTCTTGAGAAGAATGCAGGACAAGACAATTGCTTTTATAGGAGATTCTTTGGGCCGACAGCAGTTCCAGTCTTTAATGTGTATGGCAACTGGTGGAGAAGAAAGCCCAGAAGTGCAAAATGTGGGAAAAGAATATGGCCTTGTCAAACGTCGTGGAGCCATTCGTCCTGATGGCTGGGTCTATCGATTTCCAAAGACCAATACCACCATTTTGTATTACTGGTCAGCAAGCCTCTGTGATCTTGTGCCGCTTAACAGCTCAAACCGAACCACTGATATTGCGATGCATTTGGACCGTCCTCCAGCTTTCATGAGGCAGTACCTTGATCGGTTTGATGTGTTGGTTCTTAATACAGGGCATCACTGGAACAGGGGAAAAATTAATGGAAATCGGTGGGTAATGTATGTAGATGGAAAACCCAATGAAGATAAAAGGCGTGCACAAATTGACAGAGCAAAGAATTTTACCATACATAGTGTTGTCAGGTGGCTTGATTCACAACTTCCATTGCATCCCCACCTCAAAACATTCTTTAGGACCATCTCACCAAGGCATTTCTTTAATGGTGACTGGAACACTGGGGGGTCCTGTGATAATACTACTCCAATGTCTGGAGGAAGTGAAGTGGTCCAAGAAGGATCAAGTGATTTAATCATTGAGTCTGCTTTGAGAGGTACAAAGACAAAAATTTTGGACATCACTGCTCTTTCTCAATTGAGGGATGAAGGTCATGTATCCCGCTACACCATTAGAGGAACTGCTGCTGTAAATGATTGCTTGCACTGGTGCCTACCTGGAATTCCAGACACATGGAATGAACTTCTTATTGCACAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

503

Amino Acids

56.7

Weight (kDa)

8.88

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 162 - 215 4e-15 PMR5 N terminal Domain
PC-Esterase PF13839 216 - 500 2e-74 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 230, 302
AccB1I GGYRCC 1 cut(s) 1455
AccB7I CCANNNNNTGG 1 cut(s) 1280
AciI CCGC 2 cut(s) 917, 1408
AclWI GGATC 1 cut(s) 1315
AcsI RAATTY 7 cut(s) 256, 328, 345, 355, 1129, 1356, 1467
AfaI GTAC 4 cut(s) 70, 265, 989, 1345
AfiI CCNNNNNNNGG 2 cut(s) 278, 1280
AgsI TTSAA 5 cut(s) 187, 206, 254, 278, 350
AjnI CCWGG 1 cut(s) 1462
AluBI AGCT 2 cut(s) 927, 974
AluI AGCT 2 cut(s) 927, 974
Alw21I GWGCWC 1 cut(s) 1111
Alw26I GTCTC 2 cut(s) 28, 46
Alw44I GTGCAC 1 cut(s) 1107
AlwI GGATC 1 cut(s) 1315
AlwNI CAGNNNCTG 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 3 cut(s) 126, 721, 805
ApaLI GTGCAC 1 cut(s) 1107
ApeKI GCWGC 3 cut(s) 338, 407, 1430
ApoI RAATTY 7 cut(s) 256, 328, 345, 355, 1129, 1356, 1467
ArsI GACNNNNNNTTYG 2 cut(s) 1342, 1374
AseI ATTAAT 1 cut(s) 1050
Asp700I GAANNNNTTC 1 cut(s) 138
AspS9I GGNCC 6 cut(s) 127, 721, 961, 1206, 1254, 1297
AsuHPI GGTGA 5 cut(s) 210, 282, 351, 1206, 1247
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 4 cut(s) 961, 1206, 1254, 1297
BaeGI GKGCMC 1 cut(s) 1111
BanI GGYRCC 1 cut(s) 1455
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 1111
BbvI GCAGC 3 cut(s) 325, 394, 1417
BccI CCATC 4 cut(s) 501, 833, 1073, 1217
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 1 cut(s) 1464
BciVI GTATCC 3 cut(s) 106, 611, 1414
BcoDI GTCTC 2 cut(s) 28, 46
BfaI CTAG 1 cut(s) 435
BfuI GTATCC 3 cut(s) 106, 611, 1414
BisI GCNGC 4 cut(s) 339, 408, 917, 1431
BlsI GCNGC 4 cut(s) 340, 409, 918, 1432
Bme1390I CCNGG 1 cut(s) 1464
Bme18I GGWCC 4 cut(s) 961, 1206, 1254, 1297
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 6 cut(s) 127, 721, 961, 1206, 1254, 1297
BmiI GGNNCC 3 cut(s) 826, 1255, 1457
BmrFI CCNGG 1 cut(s) 1464
BmrI ACTGGG 1 cut(s) 1257
BmsI GCATC 4 cut(s) 434, 942, 1036, 1189
BmuI ACTGGG 1 cut(s) 1257
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 3 cut(s) 185, 954, 1302
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 694
Bsa29I ATCGAT 1 cut(s) 853
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 498, 1217
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 1280
Bse1I ACTGG 9 cut(s) 38, 272, 736, 763, 893, 1037, 1244, 1252, 1457
Bse3DI GCAATG 3 cut(s) 563, 576, 1175
BseBI CCWGG 1 cut(s) 1464
BseCI ATCGAT 1 cut(s) 853
BseDI CCNNGG 2 cut(s) 498, 1217
BseGI GGATG 2 cut(s) 1180, 1396
BseLI CCNNNNNNNGG 2 cut(s) 278, 1280
BseMI GCAATG 3 cut(s) 563, 576, 1175
BseNI ACTGG 9 cut(s) 38, 272, 736, 763, 893, 1037, 1244, 1252, 1457
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 1111
BseXI GCAGC 3 cut(s) 325, 394, 1417
BseYI CCCAGC 2 cut(s) 28, 843
BsgI GTGCAG 3 cut(s) 252, 324, 393
BshFI GGCC 3 cut(s) 128, 723, 807
BshNI GGYRCC 1 cut(s) 1455
BshVI ATCGAT 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 1111
BsiHKCI CYCGRG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 278, 1280
BsmAI GTCTC 2 cut(s) 28, 46
BsmI GAATGC 3 cut(s) 463, 668, 687
BsnI GGCC 3 cut(s) 128, 723, 807
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 1111
Bsp1407I TGTACA 1 cut(s) 68
Bsp143I GATC 4 cut(s) 662, 907, 994, 1307
BspACI CCGC 2 cut(s) 917, 1408
BspANI GGCC 3 cut(s) 128, 723, 807
BspDI ATCGAT 1 cut(s) 853
BspHI TCATGA 1 cut(s) 978
BspLI GGNNCC 3 cut(s) 826, 1255, 1457
BspPI GGATC 1 cut(s) 1315
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 1455
BspTNI GGTCTC 1 cut(s) 28
BsrDI GCAATG 3 cut(s) 563, 576, 1175
BsrGI TGTACA 1 cut(s) 68
BsrI ACTGG 9 cut(s) 38, 272, 736, 763, 893, 1037, 1244, 1252, 1457
BssECI CCNNGG 2 cut(s) 498, 1217
BssMI GATC 4 cut(s) 662, 907, 994, 1307
BssT1I CCWWGG 2 cut(s) 498, 1217
Bst2UI CCWGG 1 cut(s) 1464
Bst4CI ACNGT 2 cut(s) 623, 965
BstAUI TGTACA 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 5 cut(s) 524, 580, 898, 1107, 1448
BstF5I GGATG 2 cut(s) 1180, 1396
BstKTI GATC 4 cut(s) 665, 910, 997, 1310
BstMAI GTCTC 2 cut(s) 28, 46
BstMBI GATC 4 cut(s) 662, 907, 994, 1307
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 1 cut(s) 1464
BstSCI CCNGG 1 cut(s) 1462
BstSLI GKGCMC 1 cut(s) 1111
BstV1I GCAGC 3 cut(s) 325, 394, 1417
BstV2I GAAGAC 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 1479
Bsu15I ATCGAT 1 cut(s) 853
BsuI GTATCC 3 cut(s) 106, 611, 1414
BsuRI GGCC 3 cut(s) 128, 723, 807
BsuTUI ATCGAT 1 cut(s) 853
BtgZI GCGATG 1 cut(s) 965
BtsCI GGATG 2 cut(s) 1180, 1396
BtsI GCAGTG 1 cut(s) 1368
BtsIMutI CAGTG 5 cut(s) 939, 1030, 1245, 1368, 1450
Cac8I GCNNGC 5 cut(s) 524, 580, 898, 1107, 1448
CaiI CAGNNNCTG 1 cut(s) 44
CciI TCATGA 1 cut(s) 978
Cfr13I GGNCC 6 cut(s) 127, 721, 961, 1206, 1254, 1297
ClaI ATCGAT 1 cut(s) 853
Csp6I GTAC 4 cut(s) 69, 264, 988, 1344
CspCI CAANNNNNGTGG 4 cut(s) 802, 837, 928, 963
CviAII CATG 4 cut(s) 443, 979, 1400, 1479
CviQI GTAC 4 cut(s) 69, 264, 988, 1344
DpnI GATC 4 cut(s) 664, 909, 996, 1309
DpnII GATC 4 cut(s) 662, 907, 994, 1307
Eco130I CCWWGG 2 cut(s) 498, 1217
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 4 cut(s) 961, 1206, 1254, 1297
Eco88I CYCGRG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 1254
EcoRI GAATTC 3 cut(s) 345, 355, 1467
EcoRII CCWGG 1 cut(s) 1462
EcoT14I CCWWGG 2 cut(s) 498, 1217
EcoT22I ATGCAT 1 cut(s) 957
ErhI CCWWGG 2 cut(s) 498, 1217
FaeI CATG 4 cut(s) 446, 982, 1403, 1482
FatI CATG 4 cut(s) 442, 978, 1399, 1478
FauI CCCGC 1 cut(s) 1415
Fnu4HI GCNGC 4 cut(s) 339, 408, 917, 1431
FokI GGATG 2 cut(s) 1167, 1403
Fsp4HI GCNGC 4 cut(s) 339, 408, 917, 1431
FspBI CTAG 1 cut(s) 435
GluI GCNGC 4 cut(s) 339, 408, 917, 1431
GsaI CCCAGC 2 cut(s) 32, 847
GsuI CTGGAG 3 cut(s) 185, 954, 1302
HaeIII GGCC 3 cut(s) 128, 723, 807
Hin1II CATG 4 cut(s) 446, 982, 1403, 1482
HinfI GANTC 6 cut(s) 170, 215, 511, 713, 1163, 1328
HphI GGTGA 5 cut(s) 210, 282, 351, 1206, 1247
Hpy166II GTNNAC 2 cut(s) 290, 1109
Hpy188III TCNNGA 7 cut(s) 164, 515, 673, 836, 979, 1281, 1472
Hpy8I GTNNAC 2 cut(s) 290, 1109
Hpy99I CGWCG 1 cut(s) 822
HpyAV CCTTC 8 cut(s) 159, 205, 231, 277, 303, 372, 1298, 1388
HpyCH4III ACNGT 2 cut(s) 623, 965
HpyCH4IV ACGT 2 cut(s) 448, 817
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpySE526I ACGT 2 cut(s) 448, 817
Hsp92II CATG 4 cut(s) 446, 982, 1403, 1482
Kzo9I GATC 4 cut(s) 662, 907, 994, 1307
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 3 cut(s) 325, 394, 1417
LweI GCATC 4 cut(s) 434, 942, 1036, 1189
MaeI CTAG 1 cut(s) 435
MaeII ACGT 2 cut(s) 448, 817
MaeIII GTNAC 2 cut(s) 46, 1235
MalI GATC 4 cut(s) 664, 909, 996, 1309
MboI GATC 4 cut(s) 662, 907, 994, 1307
MboII GAAGA 6 cut(s) 199, 248, 420, 690, 779, 1106
MfeI CAATTG 2 cut(s) 696, 1382
MhlI GDGCHC 1 cut(s) 1111
MlyI GAGTC 2 cut(s) 164, 1337
MmeI TCCRAC 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 957
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 7 cut(s) 15, 743, 921, 1017, 1050, 1230, 1319
MspR9I CCNGG 1 cut(s) 1464
MunI CAATTG 2 cut(s) 696, 1382
Mva1269I GAATGC 3 cut(s) 463, 668, 687
MvaI CCWGG 1 cut(s) 1464
MwoI GCNNNNNNNGC 1 cut(s) 575
NdeII GATC 4 cut(s) 662, 907, 994, 1307
NlaIII CATG 4 cut(s) 446, 982, 1403, 1482
NlaIV GGNNCC 3 cut(s) 826, 1255, 1457
NmuCI GTSAC 2 cut(s) 46, 1235
NsiI ATGCAT 1 cut(s) 957
NspV TTCGAA 1 cut(s) 455
PagI TCATGA 1 cut(s) 978
PctI GAATGC 3 cut(s) 463, 668, 687
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 215, 511, 713, 1163
PflMI CCANNNNNTGG 1 cut(s) 1280
PkrI GCNGC 4 cut(s) 340, 409, 918, 1432
PleI GAGTC 2 cut(s) 164, 1336
PpsI GAGTC 2 cut(s) 164, 1336
PpuMI RGGWCCY 1 cut(s) 1254
PshBI ATTAAT 1 cut(s) 1050
PsiI TTATAA 2 cut(s) 230, 302
Psp5II RGGWCCY 1 cut(s) 1254
Psp6I CCWGG 1 cut(s) 1462
PspFI CCCAGC 2 cut(s) 28, 843
PspGI CCWGG 1 cut(s) 1462
PspN4I GGNNCC 3 cut(s) 826, 1255, 1457
PspPI GGNCC 6 cut(s) 127, 721, 961, 1206, 1254, 1297
PspPPI RGGWCCY 1 cut(s) 1254
PstNI CAGNNNCTG 1 cut(s) 44
RsaI GTAC 4 cut(s) 70, 265, 989, 1345
RsaNI GTAC 4 cut(s) 69, 264, 988, 1344
SaqAI TTAA 7 cut(s) 15, 743, 921, 1017, 1050, 1230, 1319
SatI GCNGC 4 cut(s) 339, 408, 917, 1431
Sau3AI GATC 4 cut(s) 662, 907, 994, 1307
Sau96I GGNCC 6 cut(s) 127, 721, 961, 1206, 1254, 1297
SchI GAGTC 2 cut(s) 164, 1337
ScrFI CCNGG 1 cut(s) 1464
SduI GDGCHC 1 cut(s) 1111
SfaNI GCATC 4 cut(s) 434, 942, 1036, 1189
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 4 cut(s) 961, 1206, 1254, 1297
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
SsiI CCGC 2 cut(s) 917, 1408
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 1462
StyI CCWWGG 2 cut(s) 498, 1217
TaaI ACNGT 2 cut(s) 623, 965
TaiI ACGT 2 cut(s) 451, 820
TaqI TCGA 4 cut(s) 152, 455, 657, 853
TatI WGTACW 1 cut(s) 68
TauI GCSGC 1 cut(s) 919
TfiI GAWTC 4 cut(s) 215, 511, 713, 1163
Tru1I TTAA 7 cut(s) 15, 743, 921, 1017, 1050, 1230, 1319
Tru9I TTAA 7 cut(s) 15, 743, 921, 1017, 1050, 1230, 1319
TscAI CASTG 5 cut(s) 946, 1037, 1252, 1375, 1457
TseFI GTSAC 2 cut(s) 46, 1235
TseI GCWGC 3 cut(s) 338, 407, 1430
Tsp45I GTSAC 2 cut(s) 46, 1235
TspDTI ATGAA 7 cut(s) 17, 459, 536, 967, 1107, 1407, 1500
TspRI CASTG 5 cut(s) 946, 1037, 1252, 1375, 1457
Van91I CCANNNNNTGG 1 cut(s) 1280
VneI GTGCAC 1 cut(s) 1107
VpaK11BI GGWCC 4 cut(s) 961, 1206, 1254, 1297
VspI ATTAAT 1 cut(s) 1050
XapI RAATTY 7 cut(s) 256, 328, 345, 355, 1129, 1356, 1467
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.