Rw2G023420

Protein trichome birefringence-like 14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008475
Physical Location & Seq
Reverse (-)
34148655 .. 34152326
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023420.1

Sequence Viewer

Length: 1509 bp
ATGAAAGGTGGATTTAACTATAAAATGCTGGGGAGACCAGTCTCTGTCACTTTGACTGCTCTTGTTTGTACAACCATATTACTTTTGGTTTGGGAGAAAAATCCTATTGCGGATACTCTACTATTGGCCCGAGAACATTTTCCAATTCCTTCGATAGATTTTCTGGAGGACTCCTCCTCAAAATCTTTGAAGACAGATGAGAATGTTCAAGGGAAGGATTCAACTTCTGTAATAATAGAAGCAAAAGAAATTGAAAATTCTGGTGCTGCACCAGTTCAAGGGAAGGGTTCACCTTCTATTATAATAGAAAAAACAAACAAAACTCAAAATTCTGGTGCTGCACCAATTCAAGAGAATTCACCTTCTACTACAATAGAAGAAACAAACAAAATAGAAAACTCTGGTGCTGCACCAACAGATTTTGTATCTTCTCCTGGAGTGCATGAACGTAATTCGAATGCGACATCTCCTTACCAACCTAAAGTCTGTAATTATGCCAAGGGTAGATGGATTCCAGACAGCCGGCGACCATTGTATTCTGGGTTTCATTGTAAGCAATGGTTATCAGCAATGTGGGCTTGCAGACTGACACAGCGACCAGATTTCTCTTTTGAGGGATACCGGTGGAAGCCAGAAAGTTGTGAAATGCCAGAGTTCGAGCGATCTGCATTCTTGAGAAGAATGCAGGACAAGACAATTGCTTTTATAGGAGATTCTTTGGGCCGACAGCAGTTCCAGTCTTTAATGTGTATGGCAACCGGCGGAGAAGAAAGCCCAGAAGTGCAAAATGTGGGAAAAGAATATGGCCTTGTCAAACGTCGTGGAGCTATTCGTCCTGATGGCTGGGCCTATCGATTTCCAAAGACCAATACCACCATTTTGTATTACTGGTCAGCAAGCCTCTGTGATCTTGTGCCGCTTAACAGCTCAAACCGAACCACTGATATTGCGATGCATTTGGACCGTCCTCCAGCTTTCATGAGGCAGTACCTTGATCGGTTTGATGTGTTGGTTCTTAATACAGGGCATCACTGGAATAGGGGAAAAATTAATGGAAATCGGTGGGTAATGTATGTAGATGGAAAACCCAATGAAGATAAAAGGCGTGCACAAATTGACAGAGCAAAGAATTTTACCATACATAGTGTTGTCAGGTGGCTTGATTCACAACTTCCATCGCATCCCCACCTCAAAACATTCTTTAGGACCATCTCACCAAGGCATTTCTTTAATGGTGACTGGAACACTGGGGGATCCTGTGATAATACTACTCCGATGTCTGGAGGAAGTGAAGTGGTCCAAGAGGGATCAAGTGATTTAATCATTGAGTCTGCTTTGAGAGGTACAAAGACAAAGATTTTGGACATCACTGCTCTTTCTCAATTGAGGGATGAAGGTCATGTATCCCGCTACACCATTAGAGGAACTGCTGCTGTAAATGATTGCTTGCACTGGTGCCTACCTGGAATTCCAGACACATGGAATGAAATTCTTATTGCACAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

502

Amino Acids

56.44

Weight (kDa)

8.42

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 162 - 215 4e-15 PMR5 N terminal Domain
PC-Esterase PF13839 216 - 500 8.7e-75 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 1455
AciI CCGC 4 cut(s) 110, 762, 917, 1408
AclWI GGATC 3 cut(s) 1248, 1261, 1315
AcsI RAATTY 6 cut(s) 256, 328, 355, 1129, 1467, 1488
AfaI GTAC 3 cut(s) 70, 989, 1345
AfiI CCNNNNNNNGG 2 cut(s) 278, 1280
AgeI ACCGGT 1 cut(s) 621
AgsI TTSAA 6 cut(s) 190, 209, 222, 254, 278, 350
AjnI CCWGG 2 cut(s) 433, 1462
AluBI AGCT 3 cut(s) 827, 927, 974
AluI AGCT 3 cut(s) 827, 927, 974
Alw21I GWGCWC 1 cut(s) 1111
Alw26I GTCTC 2 cut(s) 28, 46
Alw44I GTGCAC 1 cut(s) 1107
AlwI GGATC 3 cut(s) 1248, 1261, 1315
AlwNI CAGNNNCTG 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 4 cut(s) 126, 721, 805, 846
ApaLI GTGCAC 1 cut(s) 1107
ApeKI GCWGC 4 cut(s) 266, 338, 407, 1430
ApoI RAATTY 6 cut(s) 256, 328, 355, 1129, 1467, 1488
ArsI GACNNNNNNTTYG 2 cut(s) 1342, 1374
AseI ATTAAT 1 cut(s) 1050
AsiGI ACCGGT 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 138
AspS9I GGNCC 6 cut(s) 127, 721, 846, 961, 1206, 1297
AsuHPI GGTGA 4 cut(s) 282, 351, 1206, 1247
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 3 cut(s) 961, 1206, 1297
BaeGI GKGCMC 1 cut(s) 1111
BamHI GGATCC 1 cut(s) 1253
BanI GGYRCC 1 cut(s) 1455
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 1111
BbvI GCAGC 4 cut(s) 253, 325, 394, 1417
BccI CCATC 5 cut(s) 501, 833, 1073, 1183, 1217
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 2 cut(s) 435, 1464
BciVI GTATCC 3 cut(s) 106, 611, 1414
BcoDI GTCTC 2 cut(s) 28, 46
BfuI GTATCC 3 cut(s) 106, 611, 1414
BisI GCNGC 5 cut(s) 267, 339, 408, 917, 1431
BlsI GCNGC 5 cut(s) 268, 340, 409, 918, 1432
Bme1390I CCNGG 2 cut(s) 435, 1464
Bme18I GGWCC 3 cut(s) 961, 1206, 1297
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 6 cut(s) 127, 721, 846, 961, 1206, 1297
BmiI GGNNCC 2 cut(s) 1255, 1457
BmrFI CCNGG 2 cut(s) 435, 1464
BmrI ACTGGG 1 cut(s) 1257
BmsI GCATC 3 cut(s) 942, 1036, 1189
BmuI ACTGGG 1 cut(s) 1257
BpiI GAAGAC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 4 cut(s) 185, 456, 954, 1302
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 694
Bsa29I ATCGAT 1 cut(s) 853
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 498, 1217
BsaWI WCCGGW 1 cut(s) 621
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 1280
Bse118I RCCGGY 3 cut(s) 522, 621, 758
Bse1I ACTGG 8 cut(s) 38, 272, 736, 893, 1037, 1244, 1252, 1457
Bse3DI GCAATG 2 cut(s) 563, 576
BseBI CCWGG 2 cut(s) 435, 1464
BseCI ATCGAT 1 cut(s) 853
BseDI CCNNGG 2 cut(s) 498, 1217
BseGI GGATG 2 cut(s) 1180, 1396
BseLI CCNNNNNNNGG 2 cut(s) 278, 1280
BseMI GCAATG 2 cut(s) 563, 576
BseNI ACTGG 8 cut(s) 38, 272, 736, 893, 1037, 1244, 1252, 1457
BseRI GAGGAG 2 cut(s) 163, 166
BseSI GKGCMC 1 cut(s) 1111
BseXI GCAGC 4 cut(s) 253, 325, 394, 1417
BseYI CCCAGC 2 cut(s) 28, 843
BsgI GTGCAG 3 cut(s) 252, 324, 393
BshFI GGCC 4 cut(s) 128, 723, 807, 848
BshNI GGYRCC 1 cut(s) 1455
BshTI ACCGGT 1 cut(s) 621
BshVI ATCGAT 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 1111
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 3 cut(s) 523, 622, 759
BslI CCNNNNNNNGG 2 cut(s) 278, 1280
BsmAI GTCTC 2 cut(s) 28, 46
BsmI GAATGC 3 cut(s) 463, 668, 687
BsnI GGCC 4 cut(s) 128, 723, 807, 848
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 1111
Bsp1407I TGTACA 1 cut(s) 68
Bsp143I GATC 5 cut(s) 662, 907, 994, 1253, 1307
BspACI CCGC 4 cut(s) 110, 762, 917, 1408
BspANI GGCC 4 cut(s) 128, 723, 807, 848
BspDI ATCGAT 1 cut(s) 853
BspHI TCATGA 1 cut(s) 978
BspLI GGNNCC 2 cut(s) 1255, 1457
BspPI GGATC 3 cut(s) 1248, 1261, 1315
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 1455
BspTNI GGTCTC 1 cut(s) 28
BsrDI GCAATG 2 cut(s) 563, 576
BsrFI RCCGGY 3 cut(s) 522, 621, 758
BsrGI TGTACA 1 cut(s) 68
BsrI ACTGG 8 cut(s) 38, 272, 736, 893, 1037, 1244, 1252, 1457
BssAI RCCGGY 3 cut(s) 522, 621, 758
BssECI CCNNGG 2 cut(s) 498, 1217
BssMI GATC 5 cut(s) 662, 907, 994, 1253, 1307
BssT1I CCWWGG 2 cut(s) 498, 1217
Bst2UI CCWGG 2 cut(s) 435, 1464
Bst4CI ACNGT 1 cut(s) 965
BstAUI TGTACA 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 5 cut(s) 524, 580, 898, 1107, 1448
BstF5I GGATG 2 cut(s) 1180, 1396
BstKTI GATC 5 cut(s) 665, 910, 997, 1256, 1310
BstMAI GTCTC 2 cut(s) 28, 46
BstMBI GATC 5 cut(s) 662, 907, 994, 1253, 1307
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 2 cut(s) 435, 1464
BstSCI CCNGG 2 cut(s) 433, 1462
BstSLI GKGCMC 1 cut(s) 1111
BstV1I GCAGC 4 cut(s) 253, 325, 394, 1417
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 1253
BstXI CCANNNNNNTGG 1 cut(s) 1479
BstYI RGATCY 1 cut(s) 1253
Bsu15I ATCGAT 1 cut(s) 853
BsuI GTATCC 3 cut(s) 106, 611, 1414
BsuRI GGCC 4 cut(s) 128, 723, 807, 848
BsuTUI ATCGAT 1 cut(s) 853
BtgZI GCGATG 2 cut(s) 965, 1161
BtsCI GGATG 2 cut(s) 1180, 1396
BtsI GCAGTG 1 cut(s) 1368
BtsIMutI CAGTG 5 cut(s) 939, 1030, 1245, 1368, 1450
Cac8I GCNNGC 5 cut(s) 524, 580, 898, 1107, 1448
CaiI CAGNNNCTG 1 cut(s) 44
CciI TCATGA 1 cut(s) 978
Cfr10I RCCGGY 3 cut(s) 522, 621, 758
Cfr13I GGNCC 6 cut(s) 127, 721, 846, 961, 1206, 1297
ClaI ATCGAT 1 cut(s) 853
Csp6I GTAC 3 cut(s) 69, 988, 1344
CspAI ACCGGT 1 cut(s) 621
CspCI CAANNNNNGTGG 4 cut(s) 802, 837, 928, 963
CviAII CATG 4 cut(s) 443, 979, 1400, 1479
CviQI GTAC 3 cut(s) 69, 988, 1344
DpnI GATC 5 cut(s) 664, 909, 996, 1255, 1309
DpnII GATC 5 cut(s) 662, 907, 994, 1253, 1307
EciI GGCGGA 1 cut(s) 777
Eco130I CCWWGG 2 cut(s) 498, 1217
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 3 cut(s) 961, 1206, 1297
Eco88I CYCGRG 1 cut(s) 129
EcoRI GAATTC 2 cut(s) 355, 1467
EcoRII CCWGG 2 cut(s) 433, 1462
EcoT14I CCWWGG 2 cut(s) 498, 1217
EcoT22I ATGCAT 1 cut(s) 957
ErhI CCWWGG 2 cut(s) 498, 1217
FaeI CATG 4 cut(s) 446, 982, 1403, 1482
FatI CATG 4 cut(s) 442, 978, 1399, 1478
FauI CCCGC 1 cut(s) 1415
Fnu4HI GCNGC 5 cut(s) 267, 339, 408, 917, 1431
FokI GGATG 2 cut(s) 1167, 1403
Fsp4HI GCNGC 5 cut(s) 267, 339, 408, 917, 1431
GluI GCNGC 5 cut(s) 267, 339, 408, 917, 1431
GsaI CCCAGC 2 cut(s) 32, 847
GsuI CTGGAG 4 cut(s) 185, 456, 954, 1302
HaeIII GGCC 4 cut(s) 128, 723, 807, 848
HapII CCGG 3 cut(s) 523, 622, 759
Hin1II CATG 4 cut(s) 446, 982, 1403, 1482
HinfI GANTC 6 cut(s) 170, 218, 511, 713, 1163, 1328
HpaII CCGG 3 cut(s) 523, 622, 759
HphI GGTGA 4 cut(s) 282, 351, 1206, 1247
Hpy166II GTNNAC 2 cut(s) 290, 1109
Hpy188I TCNGA 1 cut(s) 1275
Hpy188III TCNNGA 8 cut(s) 164, 350, 515, 673, 836, 979, 1281, 1472
Hpy8I GTNNAC 2 cut(s) 290, 1109
Hpy99I CGWCG 1 cut(s) 822
HpyAV CCTTC 6 cut(s) 159, 208, 277, 303, 372, 1388
HpyCH4III ACNGT 1 cut(s) 965
HpyCH4IV ACGT 2 cut(s) 448, 817
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpySE526I ACGT 2 cut(s) 448, 817
Hsp92II CATG 4 cut(s) 446, 982, 1403, 1482
KroI GCCGGC 1 cut(s) 522
KroNI GCCGGC 1 cut(s) 524
Kzo9I GATC 5 cut(s) 662, 907, 994, 1253, 1307
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 4 cut(s) 253, 325, 394, 1417
LweI GCATC 3 cut(s) 942, 1036, 1189
MaeII ACGT 2 cut(s) 448, 817
MaeIII GTNAC 2 cut(s) 46, 1235
MalI GATC 5 cut(s) 664, 909, 996, 1255, 1309
MboI GATC 5 cut(s) 662, 907, 994, 1253, 1307
MboII GAAGA 6 cut(s) 202, 389, 420, 690, 779, 1106
MfeI CAATTG 2 cut(s) 696, 1382
MflI RGATCY 1 cut(s) 1253
MhlI GDGCHC 1 cut(s) 1111
MlyI GAGTC 2 cut(s) 164, 1337
Mph1103I ATGCAT 1 cut(s) 957
MroNI GCCGGC 1 cut(s) 522
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 7 cut(s) 15, 743, 921, 1017, 1050, 1230, 1319
MspI CCGG 3 cut(s) 523, 622, 759
MspR9I CCNGG 2 cut(s) 435, 1464
MunI CAATTG 2 cut(s) 696, 1382
Mva1269I GAATGC 3 cut(s) 463, 668, 687
MvaI CCWGG 2 cut(s) 435, 1464
MwoI GCNNNNNNNGC 1 cut(s) 575
NaeI GCCGGC 1 cut(s) 524
NdeII GATC 5 cut(s) 662, 907, 994, 1253, 1307
NgoMIV GCCGGC 1 cut(s) 522
NlaIII CATG 4 cut(s) 446, 982, 1403, 1482
NlaIV GGNNCC 2 cut(s) 1255, 1457
NmuCI GTSAC 2 cut(s) 46, 1235
NsiI ATGCAT 1 cut(s) 957
NspV TTCGAA 1 cut(s) 455
PagI TCATGA 1 cut(s) 978
PctI GAATGC 3 cut(s) 463, 668, 687
PdiI GCCGGC 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 218, 511, 713, 1163
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 621
PkrI GCNGC 5 cut(s) 268, 340, 409, 918, 1432
PleI GAGTC 2 cut(s) 164, 1336
PpsI GAGTC 2 cut(s) 164, 1336
PshBI ATTAAT 1 cut(s) 1050
PsiI TTATAA 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 433, 1462
PspFI CCCAGC 2 cut(s) 28, 843
PspGI CCWGG 2 cut(s) 433, 1462
PspN4I GGNNCC 2 cut(s) 1255, 1457
PspPI GGNCC 6 cut(s) 127, 721, 846, 961, 1206, 1297
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 1253
RsaI GTAC 3 cut(s) 70, 989, 1345
RsaNI GTAC 3 cut(s) 69, 988, 1344
SaqAI TTAA 7 cut(s) 15, 743, 921, 1017, 1050, 1230, 1319
SatI GCNGC 5 cut(s) 267, 339, 408, 917, 1431
Sau3AI GATC 5 cut(s) 662, 907, 994, 1253, 1307
Sau96I GGNCC 6 cut(s) 127, 721, 846, 961, 1206, 1297
SchI GAGTC 2 cut(s) 164, 1337
ScrFI CCNGG 2 cut(s) 435, 1464
SduI GDGCHC 1 cut(s) 1111
SfaNI GCATC 3 cut(s) 942, 1036, 1189
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 3 cut(s) 961, 1206, 1297
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
SsiI CCGC 4 cut(s) 110, 762, 917, 1408
StyD4I CCNGG 2 cut(s) 433, 1462
StyI CCWWGG 2 cut(s) 498, 1217
TaaI ACNGT 1 cut(s) 965
TaiI ACGT 2 cut(s) 451, 820
TaqI TCGA 4 cut(s) 152, 455, 657, 853
TatI WGTACW 1 cut(s) 68
TauI GCSGC 1 cut(s) 919
TfiI GAWTC 4 cut(s) 218, 511, 713, 1163
Tru1I TTAA 7 cut(s) 15, 743, 921, 1017, 1050, 1230, 1319
Tru9I TTAA 7 cut(s) 15, 743, 921, 1017, 1050, 1230, 1319
TscAI CASTG 5 cut(s) 946, 1037, 1252, 1375, 1457
TseFI GTSAC 2 cut(s) 46, 1235
TseI GCWGC 4 cut(s) 266, 338, 407, 1430
Tsp45I GTSAC 2 cut(s) 46, 1235
TspDTI ATGAA 7 cut(s) 17, 459, 536, 967, 1107, 1407, 1500
TspRI CASTG 5 cut(s) 946, 1037, 1252, 1375, 1457
VneI GTGCAC 1 cut(s) 1107
VpaK11BI GGWCC 3 cut(s) 961, 1206, 1297
VspI ATTAAT 1 cut(s) 1050
XapI RAATTY 6 cut(s) 256, 328, 355, 1129, 1467, 1488
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.