Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008475

Physical Location & Seq

Genomic Coordinates Forward (+)

55081614 .. 55087993

Gene Structure 6380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGAAAGGTGGATTTAACTATAAAATGCTGGGGAGACCAGTCTCTGTCACTTTGACTGCTCTTGTTTGTACAACCATATTACTTTTGGCTTGGGAGAAAAATCCTTTTGCGGATACTCTACTATTGGCCCGAGAACATTTTCCAATTCCTTCGATAGATTTTCTGCAGGACTCCTCCTCAAAATCTTTGAAGACAGATGAGAATGTTCAAGGGAAGGATTCACCTTCTGTTATAATAGAAGAAGCAAAAGAAACTGAAAATTCTGGTGCTGCACCAGTTCAAGGGAAGGGTTCACCTTCTATTATAATAGAAAAAACAAACAAAACACAAAATTCTGGTGCTGCACCAACAGATTTTGCATCTTCTCCTAGAGTGCATGAACGTAATTCGAATGCGACATCTCCTTACCAACCTAAAGTCTGTAATTATGCCAAGGGTAGATGGATTCCAGACAGCAGGCGACCATTGTATTCTGGGTTACATTGTAAGCAATGGTTATCAGCAATGTGGGCTTGCAGACTGACAAAACGACCAGATTTCTCTTTTGAGGGATACCGGTGGAAGCCAGAAAGTTGTGAAATGCCAGAGTTCGAGCGATCTGCATTCTTGAGAAGAATGCAGGACAAGACAATTGCTTTTATAGGAGATTCTTTGGGCCGACAGCAGTTCCAGTCTTTAATGTGTATGGCAACCGGTGGAGAAGAAAGCCCAGAAGTGCAAAATGTGGGAAAAGAATATGGCCTTGTCAAACGTCGTGGAGCCATTCGTCCTGATGGCTGGGCCTATCGATTTCCAAAGACCAATACCACCATTTTGTATTACTGGTCAGCAAGCCTCTGTGATCTTGTGCCGCTTAACAGCTCAAACCGAACCACTGATATTGCGATGCATTTGGACCGTCCTCCAGCTTTCATGAGGCAGTACCTTGATCGGTTTGATGTGTTGGTTCTTAATACAGGGCATCACTGGAACAGGGGAAAAATTAATGGAAATCGGTGGGTAATGTATGTAGATGGAAAACCTAATGAAGATAAAAGGCGTGCACAAATTGACAGAGCAAAGAATTTTACCATACATAGTGTTGTCAGGTGGCTTGATTCACAACTTCCATCGCATCCCCACCTCAAAACATTCTTTAGGACCATCTCACCTAGGCATTTCTTTAATGGTGACTGGAACACTGGGGGGTCCTGTGATAATACTACTCCGATGTCTGGAGGAAGTGAAGTGGTCCAAGAAGGATCAAGTGATTTAATCATTGAGTCTGCTTTGAGAGGTACAAAGACAAAAATTTTGGACATCACTGCTCTTTCTCAATTGAGGGATGAAGGTCATGTATCCCGCTACACCATTAGAGGAACTGCTGCTGTAAATGATTGCTTGCACTGGTGCCTACCTGGAATTCCAGACACATGGAATGAACTTCTTATTGCACAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

480

Amino Acids

54.18

Weight (kDa)

8.96

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	140 - 193	4.6e-15	PMR5 N terminal Domain
PC-Esterase	PF13839	194 - 478	6.5e-75	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64020
fragaria_vesca	FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540 FvH4_1g24540
malus_domestica	MD01G1006300.v1.1 MD15G1134400.v1.1
prunus_persica	Prupe.4G274000_v2.0.a1 Prupe.4G274000_v2.0.a1
pyrus_communis	pycom15g12100
rosa_chinensis	RchiOBHm_Chr2g0121951
rosa_laevigata	RLG00000018636
rosa_multiflora	Rmu_sc0003880.1_g000021
rosa_roxburghii	Rroxscaffold_2G00122190
rosa_rugosa	Rorug02G0235000
rosa_samantha	Rh2AG292100 Rh2BG302300 Rh2CG281100 Rh2DG316300
rosa_wichuraiana	Rw2G023420 Rw2G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	233, 305
AccB1I	GGYRCC	1 cut(s)	1389
AciI	CCGC	3 cut(s)	110, 851, 1342
AclWI	GGATC	1 cut(s)	1249
AcsI	RAATTY	5 cut(s)	259, 331, 1063, 1290, 1401
AfaI	GTAC	3 cut(s)	70, 923, 1279
AfiI	CCNNNNNNNGG	2 cut(s)	281, 1214
AgeI	ACCGGT	2 cut(s)	555, 692
AgsI	TTSAA	3 cut(s)	190, 209, 281
AjnI	CCWGG	1 cut(s)	1396
AluBI	AGCT	2 cut(s)	861, 908
AluI	AGCT	2 cut(s)	861, 908
Alw21I	GWGCWC	1 cut(s)	1045
Alw26I	GTCTC	2 cut(s)	28, 46
Alw44I	GTGCAC	1 cut(s)	1041
AlwI	GGATC	1 cut(s)	1249
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	4 cut(s)	126, 655, 739, 780
ApaLI	GTGCAC	1 cut(s)	1041
ApeKI	GCWGC	3 cut(s)	269, 341, 1364
ApoI	RAATTY	5 cut(s)	259, 331, 1063, 1290, 1401
ArsI	GACNNNNNNTTYG	2 cut(s)	1276, 1308
AseI	ATTAAT	1 cut(s)	984
AsiGI	ACCGGT	2 cut(s)	555, 692
Asp700I	GAANNNNTTC	1 cut(s)	138
AspA2I	CCTAGG	1 cut(s)	1151
AspS9I	GGNCC	7 cut(s)	127, 655, 780, 895, 1140, 1188, 1231
AsuHPI	GGTGA	4 cut(s)	213, 285, 1140, 1181
AsuII	TTCGAA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	4 cut(s)	895, 1140, 1188, 1231
AvrII	CCTAGG	1 cut(s)	1151
BaeGI	GKGCMC	1 cut(s)	1045
BanI	GGYRCC	1 cut(s)	1389
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	1045
BbvI	GCAGC	3 cut(s)	256, 328, 1351
BccI	CCATC	5 cut(s)	435, 767, 1007, 1117, 1151
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	1 cut(s)	1398
BciVI	GTATCC	3 cut(s)	106, 545, 1348
BcoDI	GTCTC	2 cut(s)	28, 46
BfaI	CTAG	2 cut(s)	369, 1152
BfmI	CTRYAG	1 cut(s)	164
BfuI	GTATCC	3 cut(s)	106, 545, 1348
BisI	GCNGC	4 cut(s)	270, 342, 851, 1365
BlnI	CCTAGG	1 cut(s)	1151
BlsI	GCNGC	4 cut(s)	271, 343, 852, 1366
Bme1390I	CCNGG	1 cut(s)	1398
Bme18I	GGWCC	4 cut(s)	895, 1140, 1188, 1231
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	7 cut(s)	127, 655, 780, 895, 1140, 1188, 1231
BmiI	GGNNCC	3 cut(s)	760, 1189, 1391
BmrFI	CCNGG	1 cut(s)	1398
BmrI	ACTGGG	1 cut(s)	1191
BmsI	GCATC	4 cut(s)	368, 876, 970, 1123
BmuI	ACTGGG	1 cut(s)	1191
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	2 cut(s)	888, 1236
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	628
Bsa29I	ATCGAT	1 cut(s)	787
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	432, 1151
BsaWI	WCCGGW	2 cut(s)	555, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 1214
Bse118I	RCCGGY	2 cut(s)	555, 692
Bse1I	ACTGG	8 cut(s)	38, 275, 670, 827, 971, 1178, 1186, 1391
Bse3DI	GCAATG	2 cut(s)	497, 510
BseBI	CCWGG	1 cut(s)	1398
BseCI	ATCGAT	1 cut(s)	787
BseDI	CCNNGG	2 cut(s)	432, 1151
BseGI	GGATG	2 cut(s)	1114, 1330
BseLI	CCNNNNNNNGG	2 cut(s)	281, 1214
BseMI	GCAATG	2 cut(s)	497, 510
BseNI	ACTGG	8 cut(s)	38, 275, 670, 827, 971, 1178, 1186, 1391
BseRI	GAGGAG	2 cut(s)	163, 166
BseSI	GKGCMC	1 cut(s)	1045
BseXI	GCAGC	3 cut(s)	256, 328, 1351
BseYI	CCCAGC	2 cut(s)	28, 777
BsgI	GTGCAG	2 cut(s)	255, 327
BshFI	GGCC	4 cut(s)	128, 657, 741, 782
BshNI	GGYRCC	1 cut(s)	1389
BshTI	ACCGGT	2 cut(s)	555, 692
BshVI	ATCGAT	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	1045
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	556, 693
BslI	CCNNNNNNNGG	2 cut(s)	281, 1214
BsmAI	GTCTC	2 cut(s)	28, 46
BsmI	GAATGC	3 cut(s)	397, 602, 621
BsnI	GGCC	4 cut(s)	128, 657, 741, 782
Bso31I	GGTCTC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	1045
Bsp1407I	TGTACA	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	596, 841, 928, 1241
BspACI	CCGC	3 cut(s)	110, 851, 1342
BspANI	GGCC	4 cut(s)	128, 657, 741, 782
BspDI	ATCGAT	1 cut(s)	787
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	3 cut(s)	760, 1189, 1391
BspMAI	CTGCAG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	1249
BspT104I	TTCGAA	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	1389
BspTNI	GGTCTC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	497, 510
BsrFI	RCCGGY	2 cut(s)	555, 692
BsrGI	TGTACA	1 cut(s)	68
BsrI	ACTGG	8 cut(s)	38, 275, 670, 827, 971, 1178, 1186, 1391
BssAI	RCCGGY	2 cut(s)	555, 692
BssECI	CCNNGG	2 cut(s)	432, 1151
BssMI	GATC	4 cut(s)	596, 841, 928, 1241
BssT1I	CCWWGG	2 cut(s)	432, 1151
Bst2UI	CCWGG	1 cut(s)	1398
Bst4CI	ACNGT	1 cut(s)	899
BstAUI	TGTACA	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	5 cut(s)	458, 514, 832, 1041, 1382
BstF5I	GGATG	2 cut(s)	1114, 1330
BstKTI	GATC	4 cut(s)	599, 844, 931, 1244
BstMAI	GTCTC	2 cut(s)	28, 46
BstMBI	GATC	4 cut(s)	596, 841, 928, 1241
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	1 cut(s)	1398
BstSCI	CCNGG	1 cut(s)	1396
BstSFI	CTRYAG	1 cut(s)	164
BstSLI	GKGCMC	1 cut(s)	1045
BstV1I	GCAGC	3 cut(s)	256, 328, 1351
BstV2I	GAAGAC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	1413
Bsu15I	ATCGAT	1 cut(s)	787
BsuI	GTATCC	3 cut(s)	106, 545, 1348
BsuRI	GGCC	4 cut(s)	128, 657, 741, 782
BsuTUI	ATCGAT	1 cut(s)	787
BtgZI	GCGATG	2 cut(s)	899, 1095
BtsCI	GGATG	2 cut(s)	1114, 1330
BtsI	GCAGTG	1 cut(s)	1302
BtsIMutI	CAGTG	5 cut(s)	873, 964, 1179, 1302, 1384
Cac8I	GCNNGC	5 cut(s)	458, 514, 832, 1041, 1382
CaiI	CAGNNNCTG	1 cut(s)	44
CciI	TCATGA	1 cut(s)	912
Cfr10I	RCCGGY	2 cut(s)	555, 692
Cfr13I	GGNCC	7 cut(s)	127, 655, 780, 895, 1140, 1188, 1231
ClaI	ATCGAT	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	69, 922, 1278
CspAI	ACCGGT	2 cut(s)	555, 692
CspCI	CAANNNNNGTGG	4 cut(s)	736, 771, 862, 897
CviAII	CATG	4 cut(s)	377, 913, 1334, 1413
CviQI	GTAC	3 cut(s)	69, 922, 1278
DpnI	GATC	4 cut(s)	598, 843, 930, 1243
DpnII	GATC	4 cut(s)	596, 841, 928, 1241
Eco130I	CCWWGG	2 cut(s)	432, 1151
Eco31I	GGTCTC	1 cut(s)	28
Eco47I	GGWCC	4 cut(s)	895, 1140, 1188, 1231
Eco88I	CYCGRG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	1188
EcoRI	GAATTC	1 cut(s)	1401
EcoRII	CCWGG	1 cut(s)	1396
EcoT14I	CCWWGG	2 cut(s)	432, 1151
EcoT22I	ATGCAT	1 cut(s)	891
ErhI	CCWWGG	2 cut(s)	432, 1151
FaeI	CATG	4 cut(s)	380, 916, 1337, 1416
FatI	CATG	4 cut(s)	376, 912, 1333, 1412
FauI	CCCGC	1 cut(s)	1349
Fnu4HI	GCNGC	4 cut(s)	270, 342, 851, 1365
FokI	GGATG	2 cut(s)	1101, 1337
Fsp4HI	GCNGC	4 cut(s)	270, 342, 851, 1365
FspBI	CTAG	2 cut(s)	369, 1152
GluI	GCNGC	4 cut(s)	270, 342, 851, 1365
GsaI	CCCAGC	2 cut(s)	32, 781
GsuI	CTGGAG	2 cut(s)	888, 1236
HaeIII	GGCC	4 cut(s)	128, 657, 741, 782
HapII	CCGG	2 cut(s)	556, 693
Hin1II	CATG	4 cut(s)	380, 916, 1337, 1416
HinfI	GANTC	6 cut(s)	170, 218, 445, 647, 1097, 1262
HpaII	CCGG	2 cut(s)	556, 693
HphI	GGTGA	4 cut(s)	213, 285, 1140, 1181
Hpy166II	GTNNAC	2 cut(s)	293, 1043
Hpy188I	TCNGA	1 cut(s)	1209
Hpy188III	TCNNGA	6 cut(s)	449, 607, 770, 913, 1215, 1406
Hpy8I	GTNNAC	2 cut(s)	293, 1043
Hpy99I	CGWCG	1 cut(s)	756
HpyAV	CCTTC	7 cut(s)	159, 208, 234, 280, 306, 1232, 1322
HpyCH4III	ACNGT	1 cut(s)	899
HpyCH4IV	ACGT	2 cut(s)	382, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpySE526I	ACGT	2 cut(s)	382, 751
Hsp92II	CATG	4 cut(s)	380, 916, 1337, 1416
Kzo9I	GATC	4 cut(s)	596, 841, 928, 1241
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	3 cut(s)	256, 328, 1351
LweI	GCATC	4 cut(s)	368, 876, 970, 1123
MaeI	CTAG	2 cut(s)	369, 1152
MaeII	ACGT	2 cut(s)	382, 751
MaeIII	GTNAC	3 cut(s)	46, 477, 1169
MalI	GATC	4 cut(s)	598, 843, 930, 1243
MboI	GATC	4 cut(s)	596, 841, 928, 1241
MboII	GAAGA	6 cut(s)	202, 251, 354, 624, 713, 1040
MfeI	CAATTG	2 cut(s)	630, 1316
MhlI	GDGCHC	1 cut(s)	1045
MlyI	GAGTC	2 cut(s)	164, 1271
Mph1103I	ATGCAT	1 cut(s)	891
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	7 cut(s)	15, 677, 855, 951, 984, 1164, 1253
MspI	CCGG	2 cut(s)	556, 693
MspR9I	CCNGG	1 cut(s)	1398
MunI	CAATTG	2 cut(s)	630, 1316
Mva1269I	GAATGC	3 cut(s)	397, 602, 621
MvaI	CCWGG	1 cut(s)	1398
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	4 cut(s)	596, 841, 928, 1241
NlaIII	CATG	4 cut(s)	380, 916, 1337, 1416
NlaIV	GGNNCC	3 cut(s)	760, 1189, 1391
NmuCI	GTSAC	2 cut(s)	46, 1169
NsiI	ATGCAT	1 cut(s)	891
NspV	TTCGAA	1 cut(s)	389
PagI	TCATGA	1 cut(s)	912
PctI	GAATGC	3 cut(s)	397, 602, 621
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	218, 445, 647, 1097
PinAI	ACCGGT	2 cut(s)	555, 692
PkrI	GCNGC	4 cut(s)	271, 343, 852, 1366
PleI	GAGTC	2 cut(s)	164, 1270
PpsI	GAGTC	2 cut(s)	164, 1270
PpuMI	RGGWCCY	1 cut(s)	1188
PshBI	ATTAAT	1 cut(s)	984
PsiI	TTATAA	2 cut(s)	233, 305
Psp5II	RGGWCCY	1 cut(s)	1188
Psp6I	CCWGG	1 cut(s)	1396
PspFI	CCCAGC	2 cut(s)	28, 777
PspGI	CCWGG	1 cut(s)	1396
PspN4I	GGNNCC	3 cut(s)	760, 1189, 1391
PspPI	GGNCC	7 cut(s)	127, 655, 780, 895, 1140, 1188, 1231
PspPPI	RGGWCCY	1 cut(s)	1188
PstI	CTGCAG	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	44
RsaI	GTAC	3 cut(s)	70, 923, 1279
RsaNI	GTAC	3 cut(s)	69, 922, 1278
SaqAI	TTAA	7 cut(s)	15, 677, 855, 951, 984, 1164, 1253
SatI	GCNGC	4 cut(s)	270, 342, 851, 1365
Sau3AI	GATC	4 cut(s)	596, 841, 928, 1241
Sau96I	GGNCC	7 cut(s)	127, 655, 780, 895, 1140, 1188, 1231
SchI	GAGTC	2 cut(s)	164, 1271
ScrFI	CCNGG	1 cut(s)	1398
SduI	GDGCHC	1 cut(s)	1045
SfaNI	GCATC	4 cut(s)	368, 876, 970, 1123
SfcI	CTRYAG	1 cut(s)	164
SfuI	TTCGAA	1 cut(s)	389
SinI	GGWCC	4 cut(s)	895, 1140, 1188, 1231
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
SsiI	CCGC	3 cut(s)	110, 851, 1342
SspMI	CTAG	2 cut(s)	369, 1152
StyD4I	CCNGG	1 cut(s)	1396
StyI	CCWWGG	2 cut(s)	432, 1151
TaaI	ACNGT	1 cut(s)	899
TaiI	ACGT	2 cut(s)	385, 754
TaqI	TCGA	4 cut(s)	152, 389, 591, 787
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	4 cut(s)	218, 445, 647, 1097
Tru1I	TTAA	7 cut(s)	15, 677, 855, 951, 984, 1164, 1253
Tru9I	TTAA	7 cut(s)	15, 677, 855, 951, 984, 1164, 1253
TscAI	CASTG	5 cut(s)	880, 971, 1186, 1309, 1391
TseFI	GTSAC	2 cut(s)	46, 1169
TseI	GCWGC	3 cut(s)	269, 341, 1364
Tsp45I	GTSAC	2 cut(s)	46, 1169
TspDTI	ATGAA	6 cut(s)	17, 393, 901, 1041, 1341, 1434
TspRI	CASTG	5 cut(s)	880, 971, 1186, 1309, 1391
VneI	GTGCAC	1 cut(s)	1041
VpaK11BI	GGWCC	4 cut(s)	895, 1140, 1188, 1231
VspI	ATTAAT	1 cut(s)	984
XapI	RAATTY	5 cut(s)	259, 331, 1063, 1290, 1401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmaJI	CCTAGG	1 cut(s)	1151
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	2 cut(s)	369, 1152
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.