Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016030

Physical Location & Seq

Genomic Coordinates Reverse (-)

18776754 .. 18777197

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGTCCTCATCAGCGTCCTCTCTTTGTTTCCCTTGATTTGAAGGGTCTGCTGGTCCAGGAAACTGAGGAAAAGTCCTACACAGATGGAGCGTTGTGGAACAATAATGTTCTTCAAGGAACAAGACAGAGGAGGGCGATGACGTCGACGACAACCAAGAGAAGTGGAGTGGTCTTGAAGAACAAGAAGAGAGCCGCAGATGGTAAGAGGATTCTGAAAAAGAGAAATCGGAGAAGCCTCCAGTTTGGAGCAAAAAGGGAAAACAATGGGATCCGAAGAAGGGTGAGAACTTTAAAGAGACTGATTCCAAATAGTGATTCCAAATCCGTCGAGGGTTTGGACGGACTTTTCAGAGAGACAGCAGATTACATTTTATGTTTGCAAAGTAGAGTCAGGCTCATGCAGATGATGGTTAAGGCGTTGGCAGGTTCTGATGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.79

Weight (kDa)

11.1

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47270
fragaria_vesca	FvH4_1g26990
malus_domestica	MD09G1285300.v1.1 MD17G1278000.v1.1
prunus_persica	Prupe.3G008700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0487231
rosa_laevigata	RLG00000023021
rosa_multiflora	Rmu_ssc0000366.1_g000015
rosa_roxburghii	Rroxscaffold_6G00394990
rosa_rugosa	Rorug03G0232400
rosa_samantha	Rh3AG280400 Rh3BG316300 Rh3CG314400 Rh3DG311800
rosa_wichuraiana	Rw3G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	146
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	265, 278
AcyI	GRCGYC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	43, 116, 178
AjnI	CCWGG	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
Alw26I	GTCTC	2 cut(s)	292, 350
AlwI	GGATC	2 cut(s)	265, 278
AlwNI	CAGNNNCTG	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	5, 55
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	2 cut(s)	5, 55
BamHI	GGATCC	1 cut(s)	270
BccI	CCATC	3 cut(s)	80, 194, 403
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	292, 350
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	2 cut(s)	5, 55
BmgT120I	GGNCC	2 cut(s)	5, 55
BmiI	GGNNCC	2 cut(s)	6, 272
BmrFI	CCNGG	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	381, 413
BpmI	CTGGAG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	2 cut(s)	292, 350
Bsp143I	GATC	2 cut(s)	270, 436
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	6, 272
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	2 cut(s)	265, 278
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	270, 436
BssNI	GRCGYC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	66
BstKTI	GATC	2 cut(s)	273, 439
BstMAI	GTCTC	2 cut(s)	292, 350
BstMBI	GATC	2 cut(s)	270, 436
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	152
BveI	ACCTGC	1 cut(s)	416
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	5, 55
CseI	GACGC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	3 cut(s)	194, 237, 397
CviKI_1	RGCY	3 cut(s)	194, 237, 397
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	272, 438
DpnII	GATC	2 cut(s)	270, 436
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	5, 55
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	403
FaiI	YATR	2 cut(s)	376, 401
FatI	CATG	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	4 cut(s)	211, 304, 317, 390
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	5 cut(s)	216, 231, 275, 353, 433
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	3 cut(s)	148, 151, 332
HpyAV	CCTTC	2 cut(s)	37, 273
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	382, 403
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	270, 436
LmnI	GCTCC	2 cut(s)	89, 248
LpnPI	CCDG	6 cut(s)	38, 44, 71, 254, 379, 411
MaeII	ACGT	1 cut(s)	143
MalI	GATC	2 cut(s)	272, 438
MboI	GATC	2 cut(s)	270, 436
MboII	GAAGA	4 cut(s)	104, 190, 199, 288
MflI	RGATCY	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	399
MnlI	CCTC	8 cut(s)	18, 30, 61, 123, 126, 201, 248, 325
MseI	TTAA	2 cut(s)	293, 414
MslI	CAYNNNNRTG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	270, 436
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	2 cut(s)	6, 272
PfeI	GAWTC	3 cut(s)	211, 304, 317
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	6, 272
PspPI	GGNCC	2 cut(s)	5, 55
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	293, 414
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	270, 436
Sau96I	GGNCC	2 cut(s)	5, 55
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	2 cut(s)	146, 430
SgrDI	CGTCGACG	1 cut(s)	145
SinI	GGWCC	2 cut(s)	5, 55
SmiMI	CAYNNNNRTG	1 cut(s)	404
SsiI	CCGC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	146, 330
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	3 cut(s)	211, 304, 317
Tru1I	TTAA	2 cut(s)	293, 414
Tru9I	TTAA	2 cut(s)	293, 414
TspGWI	ACGGA	2 cut(s)	316, 357
VpaK11BI	GGWCC	2 cut(s)	5, 55
XmiI	GTMKAC	1 cut(s)	146
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.