Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016030

Physical Location & Seq

Genomic Coordinates Forward (+)

33799549 .. 33799932

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1278000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTTCTCAACAGCCTCTCCTTGTTTCCCTTGGTTTAAAGGGCACGGTCCTAGAAAACGAGGGAAAGTCCTACACAAATGGGGCATTGTGGAACATCACACGGGAAAGTGGTGGAGTGGTTGTGAGGAACAAGAGATCGCCAAGAAGAAGGATCTTGAAGAAGAAGAAGACGGGGACACGCCTACAAAGTGCAAGCAGGCGCTATATTGGGATCAAACGAAGGGTGAAAACTTTGAAGGGACTGATTCCAAACAGTGATGATTCGACGGGGTTGGATGGACTTTTCAGAGACACAGCTGATTACATTTTGTCCTTGCAAACTAGAGTCAGGCTCATGCAGATTCTGGTTCAAGCATTCGCAGCAGGTTCTGATCATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.12

Weight (kDa)

11.17

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47270
fragaria_vesca	FvH4_1g26990
malus_domestica	MD09G1285300.v1.1 MD17G1278000.v1.1
prunus_persica	Prupe.3G008700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0487231
rosa_laevigata	RLG00000023021
rosa_multiflora	Rmu_ssc0000366.1_g000015
rosa_roxburghii	Rroxscaffold_6G00394990
rosa_rugosa	Rorug03G0232400
rosa_samantha	Rh3AG280400 Rh3BG316300 Rh3CG314400 Rh3DG311800
rosa_wichuraiana	Rw3G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AclWI	GGATC	2 cut(s)	161, 221
AgsI	TTSAA	3 cut(s)	160, 238, 353
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	161, 221
AlwNI	CAGNNNCTG	2 cut(s)	346, 371
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	272
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	2 cut(s)	53, 324
BfoI	RGCGCY	1 cut(s)	205
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 108, 138
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	190, 255
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	2 cut(s)	190, 255
BsmI	GAATGC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	137, 153, 213, 373
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	161, 221
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	4 cut(s)	137, 153, 213, 373
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	49, 257
BstC8I	GCNNGC	2 cut(s)	196, 200
BstF5I	GGATG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	4 cut(s)	140, 156, 216, 376
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	4 cut(s)	137, 153, 213, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	196, 200
CaiI	CAGNNNCTG	2 cut(s)	346, 371
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	3 cut(s)	16, 299, 334
CviKI_1	RGCY	3 cut(s)	16, 299, 334
DpnI	GATC	4 cut(s)	139, 155, 215, 375
DpnII	GATC	4 cut(s)	137, 153, 213, 373
DraI	TTTAAA	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	340
FaiI	YATR	2 cut(s)	207, 338
FaqI	GGGAC	2 cut(s)	190, 255
FatI	CATG	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	53, 324
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	205
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	247, 263, 327, 343
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	290, 373
Hpy188III	TCNNGA	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	3 cut(s)	144, 216, 232
HpyCH4III	ACNGT	2 cut(s)	49, 257
HpyCH4V	TGCA	3 cut(s)	194, 319, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	137, 153, 213, 373
LpnPI	CCDG	4 cut(s)	184, 316, 332, 351
Lsp1109I	GCAGC	1 cut(s)	374
MaeI	CTAG	2 cut(s)	53, 324
MalI	GATC	4 cut(s)	139, 155, 215, 375
MboI	GATC	4 cut(s)	137, 153, 213, 373
MboII	GAAGA	5 cut(s)	159, 172, 175, 178, 181
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	27, 55, 120
MseI	TTAA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	4 cut(s)	137, 153, 213, 373
NlaIII	CATG	1 cut(s)	340
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	3 cut(s)	247, 263, 343
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PspPI	GGNCC	1 cut(s)	49
PstNI	CAGNNNCTG	2 cut(s)	346, 371
PsuI	RGATCY	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	4 cut(s)	137, 153, 213, 373
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	2 cut(s)	301, 370
SinI	GGWCC	1 cut(s)	49
SspMI	CTAG	2 cut(s)	53, 324
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	49, 257
TaqI	TCGA	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	247, 263, 343
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	362
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	49
XspI	CTAG	2 cut(s)	53, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.