transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47270 |
| fragaria_vesca | FvH4_1g26990 |
| malus_domestica | MD09G1285300.v1.1 MD17G1278000.v1.1 |
| prunus_persica | Prupe.3G008700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0487231 |
| rosa_laevigata | RLG00000023021 |
| rosa_multiflora | Rmu_ssc0000366.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00394990 |
| rosa_rugosa | Rorug03G0232400 |
| rosa_samantha | Rh3AG280400 Rh3BG316300 Rh3CG314400 Rh3DG311800 |
| rosa_wichuraiana | Rw3G024830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 250, 263 |
| AcuI | CTGAAG | 1 cut(s) | 224 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 265 |
| AgsI | TTSAA | 4 cut(s) | 43, 110, 169, 280 |
| AluBI | AGCT | 1 cut(s) | 347 |
| AluI | AGCT | 1 cut(s) | 347 |
| Alw26I | GTCTC | 2 cut(s) | 277, 335 |
| AlwI | GGATC | 2 cut(s) | 250, 263 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 416 |
| AspS9I | GGNCC | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 2 cut(s) | 139, 280 |
| AvaII | GGWCC | 1 cut(s) | 52 |
| BamHI | GGATCC | 1 cut(s) | 255 |
| BccI | CCATC | 3 cut(s) | 182, 320, 388 |
| BcoDI | GTCTC | 2 cut(s) | 277, 335 |
| BfaI | CTAG | 1 cut(s) | 117 |
| Bme18I | GGWCC | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 1 cut(s) | 52 |
| BmiI | GGNNCC | 1 cut(s) | 257 |
| BmsI | GCATC | 1 cut(s) | 25 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 366, 398 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 265 |
| Bse1I | ACTGG | 1 cut(s) | 411 |
| BseGI | GGATG | 2 cut(s) | 16, 331 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BseMII | CTCAG | 2 cut(s) | 93, 411 |
| BseNI | ACTGG | 1 cut(s) | 411 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BsmAI | GTCTC | 2 cut(s) | 277, 335 |
| Bsp143I | GATC | 1 cut(s) | 255 |
| BspCNI | CTCAG | 2 cut(s) | 92, 412 |
| BspLI | GGNNCC | 1 cut(s) | 257 |
| BspPI | GGATC | 2 cut(s) | 250, 263 |
| BsrI | ACTGG | 1 cut(s) | 411 |
| BssMI | GATC | 1 cut(s) | 255 |
| Bst6I | CTCTTC | 3 cut(s) | 173, 203, 275 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 416 |
| BstDEI | CTNAG | 2 cut(s) | 79, 420 |
| BstF5I | GGATG | 2 cut(s) | 16, 331 |
| BstKTI | GATC | 1 cut(s) | 258 |
| BstMAI | GTCTC | 2 cut(s) | 277, 335 |
| BstMBI | GATC | 1 cut(s) | 255 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 416 |
| BstX2I | RGATCY | 1 cut(s) | 255 |
| BstYI | RGATCY | 1 cut(s) | 255 |
| BtsCI | GGATG | 2 cut(s) | 16, 331 |
| BtsIMutI | CAGTG | 1 cut(s) | 404 |
| CaiI | CAGNNNCTG | 1 cut(s) | 416 |
| Cfr13I | GGNCC | 1 cut(s) | 52 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 136, 171 |
| CviAII | CATG | 2 cut(s) | 62, 385 |
| CviJI | RGCY | 4 cut(s) | 5, 73, 222, 347 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 73, 222, 347 |
| DdeI | CTNAG | 2 cut(s) | 79, 420 |
| DpnI | GATC | 1 cut(s) | 257 |
| DpnII | GATC | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 3 cut(s) | 173, 203, 275 |
| EarI | CTCTTC | 3 cut(s) | 173, 203, 275 |
| Eco47I | GGWCC | 1 cut(s) | 52 |
| Eco57I | CTGAAG | 1 cut(s) | 224 |
| FaeI | CATG | 2 cut(s) | 65, 388 |
| FaiI | YATR | 3 cut(s) | 50, 63, 386 |
| FatI | CATG | 2 cut(s) | 61, 384 |
| FokI | GGATG | 2 cut(s) | 3, 338 |
| FspBI | CTAG | 1 cut(s) | 117 |
| Hin1II | CATG | 2 cut(s) | 65, 388 |
| HinfI | GANTC | 5 cut(s) | 199, 289, 302, 375, 413 |
| HphI | GGTGA | 2 cut(s) | 139, 280 |
| Hpy188I | TCNGA | 4 cut(s) | 82, 204, 260, 294 |
| HpyAV | CCTTC | 4 cut(s) | 37, 207, 234, 258 |
| HpyCH4V | TGCA | 2 cut(s) | 367, 388 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 416 |
| HpyF3I | CTNAG | 2 cut(s) | 79, 420 |
| Hsp92II | CATG | 2 cut(s) | 65, 388 |
| Kzo9I | GATC | 1 cut(s) | 255 |
| LmnI | GCTCC | 1 cut(s) | 233 |
| LpnPI | CCDG | 2 cut(s) | 322, 392 |
| LweI | GCATC | 1 cut(s) | 25 |
| MaeI | CTAG | 1 cut(s) | 117 |
| MaeIII | GTNAC | 1 cut(s) | 376 |
| MalI | GATC | 1 cut(s) | 257 |
| MboI | GATC | 1 cut(s) | 255 |
| MboII | GAAGA | 7 cut(s) | 98, 181, 190, 217, 220, 273, 292 |
| MflI | RGATCY | 1 cut(s) | 255 |
| MluCI | AATT | 2 cut(s) | 37, 227 |
| MlyI | GAGTC | 1 cut(s) | 384 |
| MnlI | CCTC | 4 cut(s) | 32, 58, 117, 233 |
| MseI | TTAA | 2 cut(s) | 36, 399 |
| MslI | CAYNNNNRTG | 2 cut(s) | 383, 389 |
| MspA1I | CMGCKG | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 416 |
| NdeII | GATC | 1 cut(s) | 255 |
| NlaIII | CATG | 2 cut(s) | 65, 388 |
| NlaIV | GGNNCC | 1 cut(s) | 257 |
| NmuCI | GTSAC | 1 cut(s) | 376 |
| PfeI | GAWTC | 4 cut(s) | 199, 289, 302, 413 |
| PleI | GAGTC | 1 cut(s) | 383 |
| PpsI | GAGTC | 1 cut(s) | 383 |
| PspN4I | GGNNCC | 1 cut(s) | 257 |
| PspPI | GGNCC | 1 cut(s) | 52 |
| PstNI | CAGNNNCTG | 1 cut(s) | 416 |
| PsuI | RGATCY | 1 cut(s) | 255 |
| PvuII | CAGCTG | 1 cut(s) | 347 |
| RseI | CAYNNNNRTG | 2 cut(s) | 383, 389 |
| SaqAI | TTAA | 2 cut(s) | 36, 399 |
| Sau3AI | GATC | 1 cut(s) | 255 |
| Sau96I | GGNCC | 1 cut(s) | 52 |
| SchI | GAGTC | 1 cut(s) | 384 |
| SetI | ASST | 2 cut(s) | 278, 349 |
| SfaNI | GCATC | 1 cut(s) | 25 |
| SinI | GGWCC | 1 cut(s) | 52 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 383, 389 |
| Sse9I | AATT | 2 cut(s) | 37, 227 |
| SspMI | CTAG | 1 cut(s) | 117 |
| TasI | AATT | 2 cut(s) | 37, 227 |
| TfiI | GAWTC | 4 cut(s) | 199, 289, 302, 413 |
| Tru1I | TTAA | 2 cut(s) | 36, 399 |
| Tru9I | TTAA | 2 cut(s) | 36, 399 |
| TscAI | CASTG | 1 cut(s) | 411 |
| TseFI | GTSAC | 1 cut(s) | 376 |
| Tsp45I | GTSAC | 1 cut(s) | 376 |
| TspGWI | ACGGA | 1 cut(s) | 301 |
| TspRI | CASTG | 1 cut(s) | 411 |
| VpaK11BI | GGWCC | 1 cut(s) | 52 |
| XspI | CTAG | 1 cut(s) | 117 |