Rorug03G0232400

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016030
Physical Location & Seq
Forward (+)
21436127 .. 21439882
3756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0232400.1

Sequence Viewer

Length: 1098 bp
ATGGGTCGTCTTGCACCATTATCAGAAGAACCCAATATTAATGAAGAAGAAGATGCCACAAATCGCTCGAGCAAAGGCATAATGAGGAGTCAGACATGGAGGAAATGGATCAAGACCCACCTCACCTCCCTTGCCATCTTCAACAAGAGGTCTGACTTCAAGGTCCTCCTCAGCGTTCTGGGTTGCCCTCTCTTCCCTGTCTCTGCCCTCCCCAAACTGCCCCTCAACGAGGTCTCCTCTACTGCACAATACATAATACAACACTTCACAGCAGCCACAGGCTGCCGCAAGCTAGAAGGTAAAGTCAAGAACATTTTTGCAACCGGAAAAGTGAACATGGCGATGGTGGATGATCCCGCTCCTGGCAGCTCCACCAGTGGAGCCACCACTATATCAGAAAAAGGGTGCTTTGTAATGTGGCAGATGATTCCTAATAAGTGGCTGATTGAACTAGTTCTGGGTGGTCACAAAGTAGCAGCTGGTAGTGATGGCAATGTGGCATGGCGCCACACACCGTGGCTTGGGGCGCATGCTGCCAAGGGCGGTGTTCGTCCTCTACGGCGAGCACTCCAGGGACTAGACCCCATGGCGATATCAGCTGTATTTGCCCCAGCACAGTACATGGGCGAAAAGCAAATCTCAGACGTCGATTGCTTTGTCTTAAAATTGTCAGCCGATCAGACAGATCTGTCTGAAAGAAGCGATAGCACTGCAGAGATGATCAAACATGTGGTATTTGGTTACTTCAGCCAAAGAAATGGACTACTCGTGCACTTAGAAGACTCTTACTTAACTAGGATTCAATCACCTGGTGCCTATCCTACATACTGGGAGACCACAATGTCGACTAAGATCGAGGATTATCGGACGGTGGAAGAGGTGATGATCGCCCATGCCGGTCAGACGAGTGTGGTCATCACACGGTTCGGGGACAATTTAAAGACTGGCTCCGCAATCACACGGTTAGAAGAAACATGGACCATCGATGATCTTGCTTTCAATGTTCAGGGCCTCTCAATGGATTGCTTCATTCCTCCTAAAGAAGTGCAGAAAGATCACCCGAAGAAAACTCTGGATTGGAGATCACCATTGCATTGA

Protein Analysis

365

Amino Acids

40.47

Weight (kDa)

7.69

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 105 - 346 1.3e-105 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016030)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47270
fragaria_vesca FvH4_1g26990
malus_domestica MD09G1285300.v1.1 MD17G1278000.v1.1
prunus_persica Prupe.3G008700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487231
rosa_laevigata RLG00000023021
rosa_multiflora Rmu_ssc0000366.1_g000015
rosa_roxburghii Rroxscaffold_6G00394990
rosa_rugosa Rorug03G0232400
rosa_samantha Rh3AG280400 Rh3BG316300 Rh3CG314400 Rh3DG311800
rosa_wichuraiana Rw3G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 161, 688, 841
AatII GACGTC 1 cut(s) 648
AccB1I GGYRCC 2 cut(s) 504, 812
AccBSI CCGCTC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 845
AciI CCGC 4 cut(s) 286, 357, 543, 951
AclWI GGATC 2 cut(s) 116, 347
AcuI CTGAAG 1 cut(s) 730
AcyI GRCGYC 2 cut(s) 505, 645
AdeI CACNNNGTG 2 cut(s) 516, 812
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 4 cut(s) 229, 362, 521, 1018
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 5 cut(s) 142, 160, 449, 803, 1000
AhlI ACTAGT 1 cut(s) 451
AjnI CCWGG 3 cut(s) 361, 570, 808
AluBI AGCT 4 cut(s) 292, 369, 479, 599
AluI AGCT 4 cut(s) 292, 369, 479, 599
Alw21I GWGCWC 2 cut(s) 568, 774
Alw26I GTCTC 3 cut(s) 205, 238, 827
Alw44I GTGCAC 1 cut(s) 770
AlwI GGATC 2 cut(s) 116, 347
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 1 cut(s) 1009
ApaLI GTGCAC 1 cut(s) 770
ApeKI GCWGC 5 cut(s) 272, 282, 366, 476, 533
AseI ATTAAT 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 2 cut(s) 507, 529
AspS9I GGNCC 3 cut(s) 163, 978, 1009
AsuHPI GGTGA 5 cut(s) 115, 798, 892, 1049, 1077
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 2 cut(s) 163, 978
BaeGI GKGCMC 1 cut(s) 774
BanI GGYRCC 2 cut(s) 504, 812
BauI CACGAG 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 2 cut(s) 568, 774
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 5 cut(s) 269, 284, 378, 488, 520
BccI CCATC 4 cut(s) 143, 337, 482, 989
BceAI ACGGC 1 cut(s) 575
BcgI CGANNNNNNTGC 4 cut(s) 692, 726, 974, 1008
BciT130I CCWGG 3 cut(s) 363, 572, 810
BclI TGATCA 1 cut(s) 720
BcoDI GTCTC 3 cut(s) 205, 238, 827
BcuI ACTAGT 1 cut(s) 451
BfaI CTAG 4 cut(s) 293, 452, 578, 795
BfmI CTRYAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 508
BglII AGATCT 1 cut(s) 685
BisI GCNGC 6 cut(s) 273, 283, 286, 367, 477, 534
BlsI GCNGC 6 cut(s) 274, 284, 287, 368, 478, 535
Bme1390I CCNGG 3 cut(s) 363, 572, 810
Bme18I GGWCC 2 cut(s) 163, 978
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 3 cut(s) 163, 978, 1009
BmiI GGNNCC 4 cut(s) 382, 506, 814, 949
BmrFI CCNGG 3 cut(s) 363, 572, 810
BmrI ACTGGG 1 cut(s) 838
BmsI GCATC 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 838
BpiI GAAGAC 1 cut(s) 786
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 984
BsaHI GRCGYC 2 cut(s) 505, 645
BsaI GGTCTC 2 cut(s) 238, 827
BsaJI CCNNGG 4 cut(s) 515, 537, 571, 585
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 218, 248
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 362, 521, 1018
Bse118I RCCGGY 1 cut(s) 896
Bse1I ACTGG 3 cut(s) 375, 833, 949
Bse3DI GCAATG 2 cut(s) 499, 1088
BseBI CCWGG 3 cut(s) 363, 572, 810
BseCI ATCGAT 1 cut(s) 984
BseDI CCNNGG 4 cut(s) 515, 537, 571, 585
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 4 cut(s) 229, 362, 521, 1018
BseMI GCAATG 2 cut(s) 499, 1088
BseMII CTCAG 2 cut(s) 184, 654
BseNI ACTGG 3 cut(s) 375, 833, 949
BseRI GAGGAG 3 cut(s) 100, 158, 226
BseSI GKGCMC 1 cut(s) 774
BseXI GCAGC 5 cut(s) 269, 284, 378, 488, 520
BseYI CCCAGC 1 cut(s) 610
BsgI GTGCAG 2 cut(s) 228, 1067
BshFI GGCC 1 cut(s) 1011
BshNI GGYRCC 2 cut(s) 504, 812
BshVI ATCGAT 1 cut(s) 984
BsiHKAI GWGCWC 2 cut(s) 568, 774
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 2 cut(s) 324, 897
BslFI GGGAC 2 cut(s) 588, 944
BslI CCNNNNNNNGG 4 cut(s) 229, 362, 521, 1018
BsmAI GTCTC 3 cut(s) 205, 238, 827
BsmFI GGGAC 2 cut(s) 588, 944
BsnI GGCC 1 cut(s) 1011
Bso31I GGTCTC 2 cut(s) 238, 827
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 568, 774
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 4 cut(s) 286, 357, 543, 951
BspANI GGCC 1 cut(s) 1011
BspCNI CTCAG 2 cut(s) 183, 653
BspDI ATCGAT 1 cut(s) 984
BspLI GGNNCC 4 cut(s) 382, 506, 814, 949
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 2 cut(s) 116, 347
BspT107I GGYRCC 2 cut(s) 504, 812
BspTNI GGTCTC 2 cut(s) 238, 827
BsrBI CCGCTC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 499, 1088
BsrFI RCCGGY 1 cut(s) 896
BsrI ACTGG 3 cut(s) 375, 833, 949
BssAI RCCGGY 1 cut(s) 896
BssECI CCNNGG 4 cut(s) 515, 537, 571, 585
BssNI GRCGYC 2 cut(s) 505, 645
BssSI CACGAG 1 cut(s) 767
BssT1I CCWWGG 2 cut(s) 537, 585
Bst2BI CACGAG 1 cut(s) 767
Bst2UI CCWGG 3 cut(s) 363, 572, 810
Bst4CI ACNGT 5 cut(s) 516, 618, 871, 924, 963
Bst6I CTCTTC 2 cut(s) 197, 870
BstACI GRCGYC 2 cut(s) 505, 645
BstC8I GCNNGC 3 cut(s) 290, 531, 564
BstDEI CTNAG 4 cut(s) 170, 640, 775, 849
BstDSI CCRYGG 2 cut(s) 515, 585
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 2 cut(s) 507, 529
BstMAI GTCTC 3 cut(s) 205, 238, 827
BstMWI GCNNNNNNNGC 4 cut(s) 526, 533, 596, 605
BstNI CCWGG 3 cut(s) 363, 572, 810
BstNSI RCATGY 2 cut(s) 533, 731
BstSCI CCNGG 3 cut(s) 361, 570, 808
BstSFI CTRYAG 1 cut(s) 711
BstSLI GKGCMC 1 cut(s) 774
BstV1I GCAGC 5 cut(s) 269, 284, 378, 488, 520
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 758
BstYI RGATCY 1 cut(s) 685
Bsu15I ATCGAT 1 cut(s) 984
BsuRI GGCC 1 cut(s) 1011
BsuTUI ATCGAT 1 cut(s) 984
BtgI CCRYGG 2 cut(s) 515, 585
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 382, 708
Cac8I GCNNGC 3 cut(s) 290, 531, 564
CfoI GCGC 2 cut(s) 507, 529
Cfr10I RCCGGY 1 cut(s) 896
Cfr13I GGNCC 3 cut(s) 163, 978, 1009
ClaI ATCGAT 1 cut(s) 984
CsiI ACCWGGT 1 cut(s) 808
Csp6I GTAC 1 cut(s) 619
CviAII CATG 9 cut(s) 96, 337, 501, 530, 586, 622, 728, 893, 975
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 4 cut(s) 170, 640, 775, 849
DinI GGCGCC 1 cut(s) 506
DraI TTTAAA 1 cut(s) 939
DraIII CACNNNGTG 2 cut(s) 516, 812
DrdI GACNNNNNNGTC 3 cut(s) 161, 688, 841
DseDI GACNNNNNNGTC 3 cut(s) 161, 688, 841
Eam1104I CTCTTC 2 cut(s) 197, 870
EarI CTCTTC 2 cut(s) 197, 870
Eco130I CCWWGG 2 cut(s) 537, 585
Eco31I GGTCTC 2 cut(s) 238, 827
Eco32I GATATC 1 cut(s) 594
Eco47I GGWCC 2 cut(s) 163, 978
Eco57I CTGAAG 1 cut(s) 730
Eco88I CYCGRG 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 163, 1009
EcoRII CCWGG 3 cut(s) 361, 570, 808
EcoRV GATATC 1 cut(s) 594
EcoT14I CCWWGG 2 cut(s) 537, 585
EgeI GGCGCC 1 cut(s) 506
EheI GGCGCC 1 cut(s) 506
ErhI CCWWGG 2 cut(s) 537, 585
FaeI CATG 9 cut(s) 99, 340, 504, 533, 589, 625, 731, 896, 978
FaqI GGGAC 2 cut(s) 588, 944
FatI CATG 9 cut(s) 95, 336, 500, 529, 585, 621, 727, 892, 974
FauI CCCGC 1 cut(s) 364
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 6 cut(s) 273, 283, 286, 367, 477, 534
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 6 cut(s) 273, 283, 286, 367, 477, 534
FspBI CTAG 4 cut(s) 293, 452, 578, 795
GlaI GCGC 2 cut(s) 506, 528
GluI GCNGC 6 cut(s) 273, 283, 286, 367, 477, 534
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 1 cut(s) 1011
HapII CCGG 2 cut(s) 324, 897
HhaI GCGC 2 cut(s) 507, 529
Hin1I GRCGYC 2 cut(s) 505, 645
Hin1II CATG 9 cut(s) 99, 340, 504, 533, 589, 625, 731, 896, 978
Hin6I GCGC 2 cut(s) 505, 527
HinP1I GCGC 2 cut(s) 505, 527
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HinfI GANTC 4 cut(s) 88, 427, 782, 799
HpaII CCGG 2 cut(s) 324, 897
HphI GGTGA 5 cut(s) 115, 798, 892, 1049, 1077
Hpy166II GTNNAC 3 cut(s) 334, 772, 846
Hpy188I TCNGA 9 cut(s) 25, 93, 154, 397, 643, 681, 694, 867, 903
Hpy188III TCNNGA 3 cut(s) 112, 307, 1073
Hpy8I GTNNAC 3 cut(s) 334, 772, 846
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 5 cut(s) 516, 618, 871, 924, 963
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 7 cut(s) 14, 245, 320, 713, 772, 1048, 1093
HpyF10VI GCNNNNNNNGC 4 cut(s) 526, 533, 596, 605
HpyF3I CTNAG 4 cut(s) 170, 640, 775, 849
HpySE526I ACGT 1 cut(s) 645
Hsp92I GRCGYC 2 cut(s) 505, 645
Hsp92II CATG 9 cut(s) 99, 340, 504, 533, 589, 625, 731, 896, 978
HspAI GCGC 2 cut(s) 505, 527
KasI GGCGCC 1 cut(s) 504
Ksp22I TGATCA 1 cut(s) 720
LmnI GCTCC 4 cut(s) 364, 374, 380, 953
Lsp1109I GCAGC 5 cut(s) 269, 284, 378, 488, 520
LweI GCATC 1 cut(s) 43
MabI ACCWGGT 1 cut(s) 808
MaeI CTAG 4 cut(s) 293, 452, 578, 795
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 2 cut(s) 464, 740
MbiI CCGCTC 1 cut(s) 359
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 2 cut(s) 568, 774
MluCI AATT 2 cut(s) 665, 934
Mly113I GGCGCC 1 cut(s) 505
MlyI GAGTC 2 cut(s) 97, 776
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 4 cut(s) 39, 662, 791, 938
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 2 cut(s) 479, 599
MspI CCGG 2 cut(s) 324, 897
MspR9I CCNGG 3 cut(s) 363, 572, 810
MvaI CCWGG 3 cut(s) 363, 572, 810
MwoI GCNNNNNNNGC 4 cut(s) 526, 533, 596, 605
NarI GGCGCC 1 cut(s) 505
NcoI CCATGG 1 cut(s) 585
NlaIII CATG 9 cut(s) 99, 340, 504, 533, 589, 625, 731, 896, 978
NlaIV GGNNCC 4 cut(s) 382, 506, 814, 949
NmuCI GTSAC 1 cut(s) 464
NspI RCATGY 2 cut(s) 533, 731
PaeI GCATGC 1 cut(s) 533
PaeR7I CTCGAG 1 cut(s) 67
PciI ACATGT 1 cut(s) 727
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 427, 799
PkrI GCNGC 6 cut(s) 274, 284, 287, 368, 478, 535
PleI GAGTC 2 cut(s) 96, 776
PluTI GGCGCC 1 cut(s) 508
PpsI GAGTC 2 cut(s) 96, 776
PpuMI RGGWCCY 1 cut(s) 163
PscI ACATGT 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 3 cut(s) 361, 570, 808
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 3 cut(s) 361, 570, 808
PspN4I GGNNCC 4 cut(s) 382, 506, 814, 949
PspPI GGNCC 3 cut(s) 163, 978, 1009
PspPPI RGGWCCY 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 67
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 1 cut(s) 685
PvuII CAGCTG 2 cut(s) 479, 599
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 341
SalI GTCGAC 1 cut(s) 844
SaqAI TTAA 4 cut(s) 39, 662, 791, 938
SatI GCNGC 6 cut(s) 273, 283, 286, 367, 477, 534
Sau96I GGNCC 3 cut(s) 163, 978, 1009
SchI GAGTC 2 cut(s) 97, 776
ScrFI CCNGG 3 cut(s) 363, 572, 810
SduI GDGCHC 2 cut(s) 568, 774
SexAI ACCWGGT 1 cut(s) 808
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 711
SfoI GGCGCC 1 cut(s) 506
Sfr274I CTCGAG 1 cut(s) 67
SinI GGWCC 2 cut(s) 163, 978
SlaI CTCGAG 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SpeI ACTAGT 1 cut(s) 451
SphI GCATGC 1 cut(s) 533
Sse9I AATT 2 cut(s) 665, 934
SsiI CCGC 4 cut(s) 286, 357, 543, 951
SspDI GGCGCC 1 cut(s) 504
SspI AATATT 1 cut(s) 37
SspMI CTAG 4 cut(s) 293, 452, 578, 795
StyD4I CCNGG 3 cut(s) 361, 570, 808
StyI CCWWGG 2 cut(s) 537, 585
TaaI ACNGT 5 cut(s) 516, 618, 871, 924, 963
TaiI ACGT 1 cut(s) 648
TaqI TCGA 5 cut(s) 68, 648, 845, 855, 984
TasI AATT 2 cut(s) 665, 934
TatI WGTACW 1 cut(s) 618
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 2 cut(s) 427, 799
Tru1I TTAA 4 cut(s) 39, 662, 791, 938
Tru9I TTAA 4 cut(s) 39, 662, 791, 938
TscAI CASTG 2 cut(s) 382, 715
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 5 cut(s) 272, 282, 366, 476, 533
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 57, 1018
TspRI CASTG 2 cut(s) 382, 715
VneI GTGCAC 1 cut(s) 770
VpaK11BI GGWCC 2 cut(s) 163, 978
VspI ATTAAT 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 227
XceI RCATGY 2 cut(s) 533, 731
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 4 cut(s) 293, 452, 578, 795
ZraI GACGTC 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.