Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016030

Physical Location & Seq

Genomic Coordinates Forward (+)

36342416 .. 36342814

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1285300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGTTCTCAACAGCCGGTCCTTGTTTCCCTTGGTTTAAAGGGTACGGTCCTAGAAAACGAGGGAAAGTCCTACACAAACGGGGCATTGTGGAATATCACAAGGGAAAGTGGTGGAGTGGTTGTGAGGAACAAGAGATCGCCAAGAAGAAGGATCTTGAAGAAGAAGAAGAAGAAGAAGACGGAGACACGCCTACAAAGTGCAGGAAGGCGCAGCAATAATATTGGGATCAAAAGAAGGGTGAAAACTTTGAAGAGACTGATTCCAAACAGTGATGATTCGATGGGGTTGGATGGACTTTTCAGAGACACAGCTGATTACATTTTATCCTTGCAAACTAGAGTCAGGCTTATGCAGATGATGGTTCAAGCATTCGCAGCAGGTTCTGATCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.83

Weight (kDa)

11.33

Isoelectric Point (pI)

69.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47270
fragaria_vesca	FvH4_1g26990
malus_domestica	MD09G1285300.v1.1 MD17G1278000.v1.1
prunus_persica	Prupe.3G008700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0487231
rosa_laevigata	RLG00000023021
rosa_multiflora	Rmu_ssc0000366.1_g000015
rosa_roxburghii	Rroxscaffold_6G00394990
rosa_rugosa	Rorug03G0232400
rosa_samantha	Rh3AG280400 Rh3BG316300 Rh3CG314400 Rh3DG311800
rosa_wichuraiana	Rw3G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AclWI	GGATC	2 cut(s)	161, 236
AfaI	GTAC	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	160, 253, 368
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	3 cut(s)	179, 250, 300
AlwI	GGATC	2 cut(s)	161, 236
AlwNI	CAGNNNCTG	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	213, 377
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	19, 49
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	19, 49
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	225, 389
BccI	CCATC	3 cut(s)	277, 287, 355
BcoDI	GTCTC	3 cut(s)	179, 250, 300
BfaI	CTAG	2 cut(s)	53, 339
BfmI	CTRYAG	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	2 cut(s)	214, 378
BlsI	GCNGC	2 cut(s)	215, 379
Bme18I	GGWCC	2 cut(s)	19, 49
BmgT120I	GGNCC	2 cut(s)	19, 49
BpiI	GAAGAC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bse118I	RCCGGY	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	225, 389
BsgI	GTGCAG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	17
BsmAI	GTCTC	3 cut(s)	179, 250, 300
BsmI	GAATGC	1 cut(s)	371
Bsp143I	GATC	4 cut(s)	137, 153, 228, 388
BspMAI	CTGCAG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	161, 236
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	4 cut(s)	137, 153, 228, 388
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	49, 272
Bst6I	CTCTTC	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	4 cut(s)	140, 156, 231, 391
BstMAI	GTCTC	3 cut(s)	179, 250, 300
BstMBI	GATC	4 cut(s)	137, 153, 228, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	225, 389
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	371
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	19, 49
Csp6I	GTAC	1 cut(s)	45
CviJI	RGCY	3 cut(s)	16, 314, 349
CviKI_1	RGCY	3 cut(s)	16, 314, 349
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	4 cut(s)	139, 155, 230, 390
DpnII	GATC	4 cut(s)	137, 153, 228, 388
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	19, 49
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	1 cut(s)	353
Fnu4HI	GCNGC	2 cut(s)	214, 378
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	214, 378
FspBI	CTAG	2 cut(s)	53, 339
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	214, 378
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	262, 278, 342
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	305, 388
Hpy188III	TCNNGA	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	144, 201, 231
HpyCH4III	ACNGT	2 cut(s)	49, 272
HpyCH4V	TGCA	4 cut(s)	203, 334, 355, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	137, 153, 228, 388
LpnPI	CCDG	4 cut(s)	30, 189, 331, 366
Lsp1109I	GCAGC	2 cut(s)	225, 389
MaeI	CTAG	2 cut(s)	53, 339
MalI	GATC	4 cut(s)	139, 155, 230, 390
MboI	GATC	4 cut(s)	137, 153, 228, 388
MboII	GAAGA	9 cut(s)	159, 172, 175, 178, 181, 184, 187, 190, 265
MflI	RGATCY	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	2 cut(s)	55, 120
MseI	TTAA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	4 cut(s)	137, 153, 228, 388
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	262, 278
PkrI	GCNGC	2 cut(s)	215, 379
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	19, 49
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	2 cut(s)	214, 378
Sau3AI	GATC	4 cut(s)	137, 153, 228, 388
Sau96I	GGNCC	2 cut(s)	19, 49
SchI	GAGTC	1 cut(s)	351
SetI	ASST	2 cut(s)	316, 385
SfcI	CTRYAG	1 cut(s)	392
SinI	GGWCC	2 cut(s)	19, 49
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	2 cut(s)	53, 339
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	49, 272
TaqI	TCGA	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	262, 278
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	2 cut(s)	213, 377
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	19, 49
XspI	CTAG	2 cut(s)	53, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.