Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47270 |
| fragaria_vesca | FvH4_1g26990 |
| malus_domestica | MD09G1285300.v1.1 MD17G1278000.v1.1 |
| prunus_persica | Prupe.3G008700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0487231 |
| rosa_laevigata | RLG00000023021 |
| rosa_multiflora | Rmu_ssc0000366.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00394990 |
| rosa_rugosa | Rorug03G0232400 |
| rosa_samantha | Rh3AG280400 Rh3BG316300 Rh3CG314400 Rh3DG311800 |
| rosa_wichuraiana | Rw3G024830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 215 |
| AccB1I | GGYRCC | 1 cut(s) | 373 |
| AccI | GTMKAC | 1 cut(s) | 278 |
| AclWI | GGATC | 3 cut(s) | 220, 233, 253 |
| AcuI | CTGAAG | 2 cut(s) | 206, 283 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 235 |
| AgsI | TTSAA | 2 cut(s) | 43, 250 |
| AjnI | CCWGG | 1 cut(s) | 376 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 256, 288 |
| Alw26I | GTCTC | 2 cut(s) | 247, 299 |
| AlwI | GGATC | 3 cut(s) | 220, 233, 253 |
| ApeKI | GCWGC | 1 cut(s) | 216 |
| AspLEI | GCGC | 2 cut(s) | 192, 216 |
| AspS9I | GGNCC | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 1 cut(s) | 250 |
| AvaII | GGWCC | 1 cut(s) | 52 |
| BamHI | GGATCC | 1 cut(s) | 225 |
| BanI | GGYRCC | 1 cut(s) | 373 |
| BbvI | GCAGC | 1 cut(s) | 228 |
| BccI | CCATC | 1 cut(s) | 284 |
| BciT130I | CCWGG | 1 cut(s) | 378 |
| BclI | TGATCA | 1 cut(s) | 102 |
| BcoDI | GTCTC | 2 cut(s) | 247, 299 |
| BfoI | RGCGCY | 1 cut(s) | 193 |
| BisI | GCNGC | 1 cut(s) | 217 |
| BlsI | GCNGC | 1 cut(s) | 218 |
| Bme1390I | CCNGG | 1 cut(s) | 378 |
| Bme18I | GGWCC | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 1 cut(s) | 52 |
| BmiI | GGNNCC | 2 cut(s) | 227, 375 |
| BmrFI | CCNGG | 1 cut(s) | 378 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 330, 362 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 114, 144 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 235 |
| Bse3DI | GCAATG | 1 cut(s) | 226 |
| BseBI | CCWGG | 1 cut(s) | 378 |
| BseGI | GGATG | 1 cut(s) | 295 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BseMI | GCAATG | 1 cut(s) | 226 |
| BseRI | GAGGAG | 1 cut(s) | 138 |
| BseXI | GCAGC | 1 cut(s) | 228 |
| BshNI | GGYRCC | 1 cut(s) | 373 |
| BslFI | GGGAC | 1 cut(s) | 193 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BsmAI | GTCTC | 2 cut(s) | 247, 299 |
| BsmFI | GGGAC | 1 cut(s) | 193 |
| BsmI | GAATGC | 1 cut(s) | 216 |
| Bsp143I | GATC | 3 cut(s) | 102, 225, 258 |
| BspHI | TCATGA | 2 cut(s) | 9, 388 |
| BspLI | GGNNCC | 2 cut(s) | 227, 375 |
| BspPI | GGATC | 3 cut(s) | 220, 233, 253 |
| BspT107I | GGYRCC | 1 cut(s) | 373 |
| BsrDI | GCAATG | 1 cut(s) | 226 |
| BssMI | GATC | 3 cut(s) | 102, 225, 258 |
| Bst2UI | CCWGG | 1 cut(s) | 378 |
| Bst4CI | ACNGT | 1 cut(s) | 310 |
| Bst6I | CTCTTC | 3 cut(s) | 167, 245, 302 |
| BstF5I | GGATG | 1 cut(s) | 295 |
| BstH2I | RGCGCY | 1 cut(s) | 193 |
| BstHHI | GCGC | 2 cut(s) | 192, 216 |
| BstKTI | GATC | 3 cut(s) | 105, 228, 261 |
| BstMAI | GTCTC | 2 cut(s) | 247, 299 |
| BstMBI | GATC | 3 cut(s) | 102, 225, 258 |
| BstNI | CCWGG | 1 cut(s) | 378 |
| BstSCI | CCNGG | 1 cut(s) | 376 |
| BstV1I | GCAGC | 1 cut(s) | 228 |
| BstX2I | RGATCY | 1 cut(s) | 225 |
| BstYI | RGATCY | 1 cut(s) | 225 |
| BtsCI | GGATG | 1 cut(s) | 295 |
| BtsIMutI | CAGTG | 1 cut(s) | 182 |
| CciI | TCATGA | 2 cut(s) | 9, 388 |
| CfoI | GCGC | 2 cut(s) | 192, 216 |
| Cfr13I | GGNCC | 1 cut(s) | 52 |
| CsiI | ACCWGGT | 1 cut(s) | 376 |
| CviAII | CATG | 3 cut(s) | 10, 49, 389 |
| DpnI | GATC | 3 cut(s) | 104, 227, 260 |
| DpnII | GATC | 3 cut(s) | 102, 225, 258 |
| Eam1104I | CTCTTC | 3 cut(s) | 167, 245, 302 |
| EarI | CTCTTC | 3 cut(s) | 167, 245, 302 |
| Eco47I | GGWCC | 1 cut(s) | 52 |
| Eco57I | CTGAAG | 2 cut(s) | 206, 283 |
| EcoRII | CCWGG | 1 cut(s) | 376 |
| FaeI | CATG | 3 cut(s) | 13, 52, 392 |
| FaiI | YATR | 6 cut(s) | 11, 50, 78, 101, 359, 390 |
| FaqI | GGGAC | 1 cut(s) | 193 |
| FatI | CATG | 3 cut(s) | 9, 48, 388 |
| FbaI | TGATCA | 1 cut(s) | 102 |
| FblI | GTMKAC | 1 cut(s) | 278 |
| Fnu4HI | GCNGC | 1 cut(s) | 217 |
| FokI | GGATG | 1 cut(s) | 302 |
| Fsp4HI | GCNGC | 1 cut(s) | 217 |
| FspI | TGCGCA | 1 cut(s) | 215 |
| GlaI | GCGC | 2 cut(s) | 191, 215 |
| GluI | GCNGC | 1 cut(s) | 217 |
| HaeII | RGCGCY | 1 cut(s) | 193 |
| HhaI | GCGC | 2 cut(s) | 192, 216 |
| Hin1II | CATG | 3 cut(s) | 13, 52, 392 |
| Hin6I | GCGC | 2 cut(s) | 190, 214 |
| HinP1I | GCGC | 2 cut(s) | 190, 214 |
| HincII | GTYRAC | 1 cut(s) | 279 |
| HindII | GTYRAC | 1 cut(s) | 279 |
| HinfI | GANTC | 2 cut(s) | 272, 294 |
| HphI | GGTGA | 1 cut(s) | 250 |
| Hpy166II | GTNNAC | 1 cut(s) | 279 |
| Hpy188I | TCNGA | 1 cut(s) | 302 |
| Hpy188III | TCNNGA | 2 cut(s) | 10, 389 |
| Hpy8I | GTNNAC | 1 cut(s) | 279 |
| Hpy99I | CGWCG | 2 cut(s) | 280, 283 |
| HpyAV | CCTTC | 3 cut(s) | 37, 153, 228 |
| HpyCH4III | ACNGT | 1 cut(s) | 310 |
| HpyCH4V | TGCA | 3 cut(s) | 206, 331, 352 |
| Hsp92II | CATG | 3 cut(s) | 13, 52, 392 |
| HspAI | GCGC | 2 cut(s) | 190, 214 |
| Ksp22I | TGATCA | 1 cut(s) | 102 |
| Kzo9I | GATC | 3 cut(s) | 102, 225, 258 |
| LpnPI | CCDG | 3 cut(s) | 350, 363, 390 |
| Lsp1109I | GCAGC | 1 cut(s) | 228 |
| MabI | ACCWGGT | 1 cut(s) | 376 |
| MaeIII | GTNAC | 1 cut(s) | 340 |
| MalI | GATC | 3 cut(s) | 104, 227, 260 |
| MboI | GATC | 3 cut(s) | 102, 225, 258 |
| MboII | GAAGA | 5 cut(s) | 145, 168, 184, 262, 289 |
| MflI | RGATCY | 1 cut(s) | 225 |
| MluCI | AATT | 1 cut(s) | 354 |
| MlyI | GAGTC | 1 cut(s) | 288 |
| MmeI | TCCRAC | 2 cut(s) | 220, 267 |
| MnlI | CCTC | 5 cut(s) | 30, 58, 116, 168, 203 |
| MseI | TTAA | 2 cut(s) | 96, 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| MspR9I | CCNGG | 1 cut(s) | 378 |
| Mva1269I | GAATGC | 1 cut(s) | 216 |
| MvaI | CCWGG | 1 cut(s) | 378 |
| NdeII | GATC | 3 cut(s) | 102, 225, 258 |
| NlaIII | CATG | 3 cut(s) | 13, 52, 392 |
| NlaIV | GGNNCC | 2 cut(s) | 227, 375 |
| NsbI | TGCGCA | 1 cut(s) | 215 |
| PagI | TCATGA | 2 cut(s) | 9, 388 |
| PctI | GAATGC | 1 cut(s) | 216 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PkrI | GCNGC | 1 cut(s) | 218 |
| PleI | GAGTC | 1 cut(s) | 288 |
| PpsI | GAGTC | 1 cut(s) | 288 |
| Psp6I | CCWGG | 1 cut(s) | 376 |
| PspGI | CCWGG | 1 cut(s) | 376 |
| PspN4I | GGNNCC | 2 cut(s) | 227, 375 |
| PspPI | GGNCC | 1 cut(s) | 52 |
| PsuI | RGATCY | 1 cut(s) | 225 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SalI | GTCGAC | 1 cut(s) | 277 |
| SaqAI | TTAA | 2 cut(s) | 96, 167 |
| SatI | GCNGC | 1 cut(s) | 217 |
| Sau3AI | GATC | 3 cut(s) | 102, 225, 258 |
| Sau96I | GGNCC | 1 cut(s) | 52 |
| SchI | GAGTC | 1 cut(s) | 288 |
| ScrFI | CCNGG | 1 cut(s) | 378 |
| SetI | ASST | 2 cut(s) | 248, 379 |
| SexAI | ACCWGGT | 1 cut(s) | 376 |
| SgrDI | CGTCGACG | 1 cut(s) | 277 |
| SinI | GGWCC | 1 cut(s) | 52 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| Sse9I | AATT | 1 cut(s) | 354 |
| StyD4I | CCNGG | 1 cut(s) | 376 |
| TaaI | ACNGT | 1 cut(s) | 310 |
| TaqI | TCGA | 1 cut(s) | 278 |
| TasI | AATT | 1 cut(s) | 354 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| Tru1I | TTAA | 2 cut(s) | 96, 167 |
| Tru9I | TTAA | 2 cut(s) | 96, 167 |
| TscAI | CASTG | 1 cut(s) | 189 |
| TseI | GCWGC | 1 cut(s) | 216 |
| TspDTI | ATGAA | 1 cut(s) | 26 |
| TspRI | CASTG | 1 cut(s) | 189 |
| VpaK11BI | GGWCC | 1 cut(s) | 52 |
| XmiI | GTMKAC | 1 cut(s) | 278 |