FvH4_1g27332

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
19033527 .. 19034739
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27332.t1

Sequence Viewer

Length: 597 bp
ATGCGGCCTTCCGGCTTTTACCCATTACCGCTTCGTGCGGCTTTCCGGTTCTTATCCATTACCGCTTCGTGCGGCGTCCCGGTTCTTATCCATTACCGCTTCGTGCGGCATTACGGTTATAACCTCTTACCGCTTGGTGCGGCATCTTGGCTATTACCCAACCGCTTCATGCGGCGTCCCGGTTATCACCCCGGCCGTTTCGTGCGGCCTCCCGGTTATTACCCATTGTCCCTTCGTGCGGCATCCTTGCTATTACCCAACCGCTTCGTGCGGTCTCATGGTTATTACCCCGACCGCTTCGTGCGGCGTCCCGGTTATTACCCATTGTCCCTTCGTGCGGCGTCCCAGTTATTACCCCAACTGCTTCGTGCGGCGTCCCGGTTATTACCCCAACTACTTCGTGCGGCATCCCGGTTATTACCTAGCCGTTTGGTGAGGCGTCCTGGTTATTTCCTATCCGCTTCGTGCGGCGTCTTGGTTTTTACCCCAACCGCTTTGTGCAGCGTCTCGGTTATTACCCTAACCGGTTCGTGCGGCGTCTCTGATATTACCCCAACCGCTTCGAGCGACGTCCCGGTTAGTATCGAACCGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.03

Weight (kDa)

11.25

Isoelectric Point (pI)

65.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AatII GACGTC 1 cut(s) 573
AcoI YGGCCR 1 cut(s) 193
AcyI GRCGYC 9 cut(s) 75, 175, 307, 341, 374, 439, 471, 537, 570
AfiI CCNNNNNNNGG 2 cut(s) 238, 337
AgeI ACCGGT 1 cut(s) 524
AjnI CCWGG 1 cut(s) 442
Alw26I GTCTC 3 cut(s) 279, 511, 544
AoxI GGCC 3 cut(s) 5, 193, 206
ApeKI GCWGC 1 cut(s) 501
AsiGI ACCGGT 1 cut(s) 524
AsuC2I CCSGG 8 cut(s) 80, 180, 192, 213, 312, 379, 412, 575
AsuHPI GGTGA 2 cut(s) 179, 445
BbvI GCAGC 1 cut(s) 513
BceAI ACGGC 2 cut(s) 180, 411
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 8 cut(s) 80, 180, 192, 213, 312, 379, 412, 575
BcoDI GTCTC 3 cut(s) 279, 511, 544
BfaI CTAG 1 cut(s) 423
Bme1390I CCNGG 9 cut(s) 80, 180, 192, 213, 312, 379, 412, 444, 575
BmrFI CCNGG 9 cut(s) 80, 180, 192, 213, 312, 379, 412, 444, 575
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 3 cut(s) 152, 251, 416
BmuI ACTGGG 1 cut(s) 340
BpuMI CCSGG 8 cut(s) 80, 180, 192, 213, 312, 379, 412, 575
BsaHI GRCGYC 9 cut(s) 75, 175, 307, 341, 374, 439, 471, 537, 570
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 2 cut(s) 45, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 337
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 2 cut(s) 242, 407
BseLI CCNNNNNNNGG 2 cut(s) 238, 337
BseNI ACTGG 1 cut(s) 346
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 513
BsgI GTGCAG 1 cut(s) 520
Bsh1285I CGRYCG 2 cut(s) 196, 295
BshFI GGCC 3 cut(s) 7, 195, 208
BshTI ACCGGT 1 cut(s) 524
BsiEI CGRYCG 2 cut(s) 196, 295
BslFI GGGAC 8 cut(s) 62, 162, 214, 294, 313, 328, 361, 557
BslI CCNNNNNNNGG 2 cut(s) 238, 337
BsmAI GTCTC 3 cut(s) 279, 511, 544
BsmBI CGTCTC 2 cut(s) 511, 544
BsmFI GGGAC 8 cut(s) 62, 162, 214, 294, 313, 328, 361, 557
BsnI GGCC 3 cut(s) 7, 195, 208
Bso31I GGTCTC 1 cut(s) 279
BspANI GGCC 3 cut(s) 7, 195, 208
BspTNI GGTCTC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 524
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 190
BssNI GRCGYC 9 cut(s) 75, 175, 307, 341, 374, 439, 471, 537, 570
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 9 cut(s) 75, 175, 307, 341, 374, 439, 471, 537, 570
BstF5I GGATG 2 cut(s) 242, 407
BstMAI GTCTC 3 cut(s) 279, 511, 544
BstMCI CGRYCG 2 cut(s) 196, 295
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 9 cut(s) 78, 178, 190, 211, 310, 377, 410, 442, 573
BstV1I GCAGC 1 cut(s) 513
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 3 cut(s) 7, 195, 208
BtsCI GGATG 2 cut(s) 242, 407
Cfr10I RCCGGY 1 cut(s) 524
CseI GACGC 9 cut(s) 64, 164, 296, 330, 363, 428, 460, 493, 526
CspAI ACCGGT 1 cut(s) 524
CviAII CATG 2 cut(s) 169, 278
CviJI RGCY 7 cut(s) 7, 15, 41, 151, 195, 208, 426
CviKI_1 RGCY 7 cut(s) 7, 15, 41, 151, 195, 208, 426
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 442
Esp3I CGTCTC 2 cut(s) 511, 544
FaeI CATG 2 cut(s) 172, 281
FaiI YATR 3 cut(s) 120, 170, 279
FaqI GGGAC 8 cut(s) 62, 162, 214, 294, 313, 328, 361, 557
FatI CATG 2 cut(s) 168, 277
FokI GGATG 2 cut(s) 229, 394
FspBI CTAG 1 cut(s) 423
HaeIII GGCC 3 cut(s) 7, 195, 208
HgaI GACGC 9 cut(s) 64, 164, 296, 330, 363, 428, 460, 493, 526
Hin1I GRCGYC 9 cut(s) 75, 175, 307, 341, 374, 439, 471, 537, 570
Hin1II CATG 2 cut(s) 172, 281
HphI GGTGA 2 cut(s) 179, 445
Hpy188I TCNGA 1 cut(s) 544
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 3 cut(s) 18, 242, 341
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 1 cut(s) 501
HpySE526I ACGT 1 cut(s) 570
Hsp92I GRCGYC 9 cut(s) 75, 175, 307, 341, 374, 439, 471, 537, 570
Hsp92II CATG 2 cut(s) 172, 281
Lsp1109I GCAGC 1 cut(s) 513
LweI GCATC 3 cut(s) 152, 251, 416
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 570
MnlI CCTC 3 cut(s) 134, 219, 429
MspR9I CCNGG 9 cut(s) 80, 180, 192, 213, 312, 379, 412, 444, 575
MvaI CCWGG 1 cut(s) 444
NciI CCSGG 8 cut(s) 80, 180, 192, 213, 312, 379, 412, 575
NlaIII CATG 2 cut(s) 172, 281
PinAI ACCGGT 1 cut(s) 524
PsiI TTATAA 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
ScrFI CCNGG 9 cut(s) 80, 180, 192, 213, 312, 379, 412, 444, 575
SetI ASST 3 cut(s) 126, 424, 573
SfaNI GCATC 3 cut(s) 152, 251, 416
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 9 cut(s) 78, 178, 190, 211, 310, 377, 410, 442, 573
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 573
TaqI TCGA 2 cut(s) 563, 585
TseI GCWGC 1 cut(s) 501
TspDTI ATGAA 1 cut(s) 157
XspI CTAG 1 cut(s) 423
ZraI GACGTC 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.