Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015526

Physical Location & Seq

Genomic Coordinates Forward (+)

1949494 .. 1956959

Gene Structure 7466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCACCCCTATCTTAGATCGAAAATCCAAACGCTAACCCCAATTCCTAATCCCGACCGATTCCCTTCTTGTCCGGCGAGCTCAAGCTTCTCTAAGTCCCCTTATTTTTCCGGCCGCAACGGCGCTTGCATGCATGAGGAGGAGCCACAGACACTGCTCGGACCAGCAGCAACATGGAGAGGCTTGAGACTTCGAGTTGGGTTTCAGCAGAAGAAGAAGAGAAGAGATAAGGATGGTGCTTTGGTGTTGGCGGTGGATGACAGAAGAAAAGAAAGAGAAAGGAGAAGGGAAAAGAGAGATGATCGTACTAGAGCTCGTCTTTCAAATGGAATTTCTATAAACTACAAGATTTCAAAAAGTGAGGCTCGGGGAGGTTTGATGAGGCTTATAAGAGCAGGTAGAACTTTCTGTGTGAACCACCTGAGTAATTGCTCATCGGAGTCCATTGAGGAATTTATTTCTAAGGAACTCCGCTTCACTTTAAGAGATAATGGGATGTGTGCCGCTTTCCAATTGCTTCACATGGTATTTGAGGTTATCCCGAATAGCGCATCAGCCGACGTGCCCATCAGCATAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

194

Amino Acids

21.92

Weight (kDa)

10.13

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27332 FvH4_1g27333 FvH4_1g28270 FvH4_7g00590 FvH4_7g00733 FvH4_7g00770 FvH4_7g01530 FvH4_7g01540 FvH4_7g01860 FvH4_7g01860 FvH4_7g01860 FvH4_7g02670 FvH4_7g05200 FvH4_7g05210
rosa_multiflora	Rmu_ssc0000386.1_g000045
rosa_rugosa	Rorug04G0069800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	386
AciI	CCGC	4 cut(s)	115, 251, 472, 504
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	330, 452
AfaI	GTAC	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	324, 354
AjiI	CACGTC	1 cut(s)	562
AluBI	AGCT	3 cut(s)	81, 87, 314
AluI	AGCT	3 cut(s)	81, 87, 314
Alw21I	GWGCWC	2 cut(s)	83, 316
Alw26I	GTCTC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	330, 452
AspLEI	GCGC	2 cut(s)	125, 551
AspS9I	GGNCC	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	567
BanII	GRGCYC	2 cut(s)	83, 316
Bbv12I	GWGCWC	2 cut(s)	83, 316
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	227, 575
BceAI	ACGGC	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	115, 168, 504
BlsI	GCNGC	3 cut(s)	116, 169, 505
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	67, 205
BseGI	GGATG	3 cut(s)	238, 262, 501
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	152, 155
BseSI	GKGCMC	1 cut(s)	567
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	179
Bsh1285I	CGRYCG	2 cut(s)	58, 115
BshFI	GGCC	1 cut(s)	114
BsiEI	CGRYCG	2 cut(s)	58, 115
BsiHKAI	GWGCWC	2 cut(s)	83, 316
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	2 cut(s)	74, 111
BslFI	GGGAC	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	3 cut(s)	83, 316, 567
Bsp143I	GATC	2 cut(s)	17, 301
BspACI	CCGC	4 cut(s)	115, 251, 472, 504
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	386
BssMI	GATC	2 cut(s)	17, 301
Bst6I	CTCTTC	2 cut(s)	212, 217
BstC8I	GCNNGC	3 cut(s)	79, 127, 131
BstDEI	CTNAG	4 cut(s)	14, 93, 422, 462
BstF5I	GGATG	3 cut(s)	238, 262, 501
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 551
BstKTI	GATC	2 cut(s)	20, 304
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	17, 301
BstMCI	CGRYCG	2 cut(s)	58, 115
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	179
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	238, 262, 501
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	152
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	3 cut(s)	79, 127, 131
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	2 cut(s)	125, 551
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	4 cut(s)	130, 134, 174, 523
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	4 cut(s)	14, 93, 422, 462
DpnI	GATC	2 cut(s)	19, 303
DpnII	GATC	2 cut(s)	17, 301
EaeI	YGGCCR	1 cut(s)	112
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	212, 217
EarI	CTCTTC	2 cut(s)	212, 217
Ecl136II	GAGCTC	2 cut(s)	81, 314
EclXI	CGGCCG	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	83, 316
Eco47I	GGWCC	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	2 cut(s)	81, 314
Eco88I	CYCGRG	1 cut(s)	366
EcoICRI	GAGCTC	2 cut(s)	81, 314
EcoT22I	ATGCAT	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	83, 316
FaeI	CATG	4 cut(s)	133, 137, 177, 526
FaiI	YATR	7 cut(s)	131, 135, 175, 338, 389, 524, 575
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	4 cut(s)	129, 133, 173, 522
Fnu4HI	GCNGC	3 cut(s)	115, 168, 504
FokI	GGATG	3 cut(s)	245, 269, 508
FriOI	GRGCYC	2 cut(s)	83, 316
Fsp4HI	GCNGC	3 cut(s)	115, 168, 504
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	124, 550
GluI	GCNGC	3 cut(s)	115, 168, 504
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	74, 111
HhaI	GCGC	2 cut(s)	125, 551
Hin1II	CATG	4 cut(s)	133, 137, 177, 526
Hin6I	GCGC	2 cut(s)	123, 549
HinP1I	GCGC	2 cut(s)	123, 549
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	2 cut(s)	60, 440
HpaII	CCGG	2 cut(s)	74, 111
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	161, 439
Hpy188III	TCNNGA	2 cut(s)	53, 541
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	2 cut(s)	75, 279
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	4, 129, 133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	4 cut(s)	14, 93, 422, 462
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	4 cut(s)	133, 137, 177, 526
HspAI	GCGC	2 cut(s)	123, 549
Kzo9I	GATC	2 cut(s)	17, 301
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	87, 124, 177, 381, 434
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	561
MalI	GATC	2 cut(s)	19, 303
MboI	GATC	2 cut(s)	17, 301
MboII	GAAGA	5 cut(s)	223, 226, 229, 234, 276
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	3 cut(s)	83, 316, 567
MluCI	AATT	5 cut(s)	42, 330, 427, 452, 512
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	8 cut(s)	130, 133, 173, 355, 365, 375, 442, 526
Mph1103I	ATGCAT	1 cut(s)	135
MseI	TTAA	1 cut(s)	482
MspI	CCGG	2 cut(s)	74, 111
MunI	CAATTG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeII	GATC	2 cut(s)	17, 301
NlaIII	CATG	4 cut(s)	133, 137, 177, 526
NlaIV	GGNNCC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	1 cut(s)	133
PaeI	GCATGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	116, 169, 505
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PsiI	TTATAA	1 cut(s)	389
Psp124BI	GAGCTC	2 cut(s)	83, 316
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SacI	GAGCTC	2 cut(s)	83, 316
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	3 cut(s)	115, 168, 504
Sau3AI	GATC	2 cut(s)	17, 301
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	3 cut(s)	83, 316, 567
SetI	ASST	8 cut(s)	83, 89, 316, 376, 400, 423, 537, 564
SfaNI	GCATC	1 cut(s)	560
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	82, 184
SmoI	CTYRAG	2 cut(s)	82, 184
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	5 cut(s)	42, 330, 427, 452, 512
SsiI	CCGC	4 cut(s)	115, 251, 472, 504
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	2 cut(s)	83, 316
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	20, 193
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	5 cut(s)	42, 330, 427, 452, 512
TauI	GCSGC	2 cut(s)	117, 506
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	1 cut(s)	167
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	330, 452
XceI	RCATGY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.