Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015526

Physical Location & Seq

Genomic Coordinates Reverse (-)

1283354 .. 1286154

Gene Structure 2801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTGGATGTTTTTTTAAGCAGGTTTCGGAGTGTTAGTGCTTTAGATCTTAAGAAGATCCTTCGACATCTAATAGAGACTGTATATAATAATGTTCAAGTGAAGGAATGGGCAAAAGCACACAATATCAATAATTCAAAATTTGGGACTTTCAATTCATACTCTCTGAGTTTGCTTGTAGTCTTCCATTTTCAGACCTGTGCACCTGCCATTCTACCACCTCTTCCAAGACATATATCGAGAAACTCTTCACGGATGATCTTCAAGGTTAACTCAATCGGCATCAAGGTGTTGGAATTTTGTTCTCATTTTAGAAAGCCTACTGCACCCCTTCCTGCTGCAATTGTTGCTTGTGTTCCAAAGAAGCTTGAGGTTCCAAAAGAATTGATATCTTCATTGCAGTTACAGGATTTGAGGCAGGAGCGCATGCCATCGTTTATCACCTGTAGCCCTGAAACAAGTATGACAAAAATTTATGACAAAGAAACAGGGATCACTAGAGCTCGTCTTTCAAATGGAATTTCTGTAAACTACAAGGGTGAATTCGTCTTTCTAGATGGAGGAACCAAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

192

Amino Acids

21.64

Weight (kDa)

9.9

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27332 FvH4_1g27333 FvH4_1g28270 FvH4_7g00590 FvH4_7g00733 FvH4_7g00770 FvH4_7g01530 FvH4_7g01540 FvH4_7g01860 FvH4_7g01860 FvH4_7g01860 FvH4_7g02670 FvH4_7g05200 FvH4_7g05210
rosa_multiflora	Rmu_ssc0000386.1_g000045
rosa_rugosa	Rorug04G0069800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	2 cut(s)	12, 214
AclWI	GGATC	2 cut(s)	52, 500
AcsI	RAATTY	5 cut(s)	140, 296, 471, 519, 542
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	5 cut(s)	98, 138, 154, 265, 513
AluBI	AGCT	2 cut(s)	367, 503
AluI	AGCT	2 cut(s)	367, 503
Alw21I	GWGCWC	2 cut(s)	205, 505
Alw26I	GTCTC	1 cut(s)	71
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	52, 500
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	5 cut(s)	140, 296, 471, 519, 542
Asp700I	GAANNNNTTC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	433, 551
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	205, 505
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	439, 551
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	498, 554
BfmI	CTRYAG	1 cut(s)	445
BfrI	CTTAAG	1 cut(s)	50
BfuAI	ACCTGC	2 cut(s)	12, 214
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	375, 565
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bse3DI	GCAATG	1 cut(s)	395
BseGI	GGATG	2 cut(s)	13, 261
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	205, 505
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	205, 505
Bsp143I	GATC	4 cut(s)	46, 57, 258, 492
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	375, 565
BspMI	ACCTGC	2 cut(s)	12, 214
BspPI	GGATC	2 cut(s)	52, 500
BspTI	CTTAAG	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	395
BssMI	GATC	4 cut(s)	46, 57, 258, 492
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	228, 253
BstAFI	CTTAAG	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	13, 261
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	4 cut(s)	49, 60, 261, 495
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	4 cut(s)	46, 57, 258, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	46, 57
BstYI	RGATCY	2 cut(s)	46, 57
BtsCI	GGATG	2 cut(s)	13, 261
BveI	ACCTGC	2 cut(s)	12, 214
Cac8I	GCNNGC	1 cut(s)	428
CfoI	GCGC	1 cut(s)	426
CviAII	CATG	1 cut(s)	427
CviJI	RGCY	4 cut(s)	319, 367, 450, 503
CviKI_1	RGCY	4 cut(s)	319, 367, 450, 503
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	4 cut(s)	48, 59, 260, 494
DpnII	GATC	4 cut(s)	46, 57, 258, 492
Eam1104I	CTCTTC	2 cut(s)	228, 253
EarI	CTCTTC	2 cut(s)	228, 253
Ecl136II	GAGCTC	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	503
EcoICRI	GAGCTC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	542
EcoRV	GATATC	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	505
FaeI	CATG	1 cut(s)	430
FaiI	YATR	8 cut(s)	85, 87, 160, 234, 236, 428, 464, 477
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	2 cut(s)	20, 268
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	498, 554
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	365
HpaI	GTTAAC	1 cut(s)	271
HphI	GGTGA	2 cut(s)	433, 551
Hpy166II	GTNNAC	3 cut(s)	203, 271, 529
Hpy188I	TCNGA	3 cut(s)	30, 168, 195
Hpy188III	TCNNGA	2 cut(s)	240, 554
Hpy8I	GTNNAC	3 cut(s)	203, 271, 529
HpyAV	CCTTC	3 cut(s)	71, 97, 341
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	203, 326, 341, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	1 cut(s)	424
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	46, 57, 258, 492
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	9 cut(s)	7, 211, 219, 348, 392, 404, 457, 465, 474
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	498, 554
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	4 cut(s)	48, 59, 260, 494
MboI	GATC	4 cut(s)	46, 57, 258, 492
MboII	GAAGA	6 cut(s)	67, 175, 215, 240, 253, 384
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	2 cut(s)	46, 57
MhlI	GDGCHC	2 cut(s)	205, 505
MluCI	AATT	9 cut(s)	133, 140, 154, 296, 342, 383, 471, 519, 542
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	231, 364, 408, 554
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	3 cut(s)	17, 51, 270
MslI	CAYNNNNRTG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	4 cut(s)	46, 57, 258, 492
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	2 cut(s)	375, 565
NspI	RCATGY	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	375, 565
PsuI	RGATCY	2 cut(s)	46, 57
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	3 cut(s)	17, 51, 270
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	46, 57, 258, 492
SduI	GDGCHC	2 cut(s)	205, 505
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	50, 368
SmoI	CTYRAG	2 cut(s)	50, 368
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	9 cut(s)	133, 140, 154, 296, 342, 383, 471, 519, 542
SspMI	CTAG	2 cut(s)	498, 554
SstI	GAGCTC	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	64, 239
TasI	AATT	9 cut(s)	133, 140, 154, 296, 342, 383, 471, 519, 542
Tru1I	TTAA	3 cut(s)	17, 51, 270
Tru9I	TTAA	3 cut(s)	17, 51, 270
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	147, 384
TspGWI	ACGGA	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	201
XapI	RAATTY	5 cut(s)	140, 296, 471, 519, 542
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	2 cut(s)	498, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.