FvH4_1g27333

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
19034903 .. 19037508
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27333.t1

Sequence Viewer

Length: 2082 bp
ATGCGGCGTCCCGGTTATTACCCATTACCGTTTTGTGCGGCGTCTCGGTTATTACCCCTTACCGTTTCGTGCGGCCTCCCCGGTTATTACCACTTACCGCTTCGTGCGGCCTCCCCGGTTATTACCCATTACTGCTTCGTGCGGCTTTCTGGTTATTACCCCAATCGCTTCGTGCGGCCTCCTGGTTATTACCCATTACAGCTTCGTGCGACCTCCCGGTTTCTACACATTATCGTTTTGTGCGGTGTCCCGGTTATTACCCCTTACCGCTTCGTGCGGCCTCCCGGTTATTGCCCCAATCGCTTCGTGCGGCCTCCTGGTTATTACCCATTACCGCTTCGTGCGGCGTCCCGGTTATTACCCATTGTCGCTTCGTGCGGCCTCCCGGTTTTTACCCATTTCCGCTTCGTGCGGCGTCCCGGTTATTACCCCAACCGTTTCGCGCGGTCTTCCGGTTATTACCCATTACCGCTTCGTGTGGCCTCCCGGTTATTACCCATTACCGCTTTGTGCGGCGTTCCTGTTATTACCCCTTACTGCTTTGTGCTGCCTCCCCGTCTCCCGGTTATTACCCGTTACCGCTTTGTGCGGCGTCTTGGTTATTACTCATTACCGCTTCGTGCTGCGTTCCGTTTATTACCCATTACCGCTTTGTGTGGCGTTCCGTTAATTACCCCAACCTTTTCGTGCAACCTCCCTGTTATTACCCATTACCGCTTCGTGCGGTCTCCCGGTTATTACCCATTACCATTTCGTACGGTGTCTTGGTTATTACCCCTTACCGCTTCGTGCGGCCTCCCAGTTATTACCCTAACCGTTTTGTGCGGCCTTCAGGTTATTACCCCAACCGCTTTGTGCGACCTCCCGGTTATTACCCCAACCGCTTCGTGCGGCGTCTCGGTTATTACCTATTACCGCTTCGTGCGGCTTTCCGGTTATTACCCCTTACGGTTTGTGCGTTCTCCTGGTTATTGCCCCAACCGCTTCATGCGGCCATCTAGTTACCCATTACCGCTTCGTGCGGCGTCCCGGTTATTACCCATTATCGCTTTGTGCGGCCTCTTGATTATTAGCCATTTAGCCATTTCCGCTTCGTGCGGCGTCCCGGTTATTACCCCAACCGCTTCGTGCAGTATCCCGGTTATTACCCATTTCCGCTTGGTGCGGCGTCCCGGTTATTACCCCTTACTGCTTCGTGCGGCCTCGCCGGTTATTACCCATTACCGCTTCGTGCGGCCTCCCCGGTTATTACCCATTACCGCTTCGTGCGGCCTCCCAGTTATTACCCCAACCGCTTCGTGCGGCCTCCCGGTTATTACCCATTACCGCTTCGTGCGGCGTCCCGGTTATTATCCATTACCGCTTCGTGCGGCCTCTCGGTTATTACCCATTACCGTTTCGTGCGGTGTCTCGGTTATTACCCCTTTCCGCTTCGTGCGGCCTCCCGGTTATTACCCTAACCGTTTTGTGCGGCCTCCTGGTTATTACCCCAACCGCTTCCTGGGGCGTCTCGGTTATTACCTATTACAGCTTTGTGCGGCTTCCCGGTTATTACCCCTTACCGTTTCGTGCGACGTTACGGTTATTACCCAACCGCTTTGTGCGGCATCCCGGTTATTACCTAACCGCTTCGTGCGGCGTCCCAGTTATTACTCTATCCACTTCGTGTGTTGTATCAGAAATTACCCTAACCGCTTGGTGCGGCGTATCAGTAATTACCCCAACCGCTTCGTGCGGCGTATCGGTATTTACCCCTACCGCTTTGTGCGGCGTCCCGGTTATTACGAATTACTGCTTCGTGTGGCATCTCGGTTACTTACCCAATCGCTTCGTGCGGCCTCCCGATTTTTACCCATTACCGCTTCGTGCGGCCTCCCGGTTATTACCCATTACCGCTTCGTGCGGCCTCCCGGTTATGATTCCAACCGCTTCGTGCGGCCTCCCGGTTATCACCCCAACAGCTTCATGCGGCCTCCCGGTTATCACGCCAACCGCTTCGTGCGGCCTCCCGGTTATCACCCCAACCGCTTCGTGCGGCCTCCCGGTTATCACCCCAACCGCTTCGTGCGGTCTCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

694

Amino Acids

78.72

Weight (kDa)

10.9

Isoelectric Point (pI)

65.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 443, 445
AcoI YGGCCR 1 cut(s) 992
AcuI CTGAAG 1 cut(s) 815
AdeI CACNNNGTG 1 cut(s) 1666
AfaI GTAC 1 cut(s) 757
AfiI CCNNNNNNNGG 2 cut(s) 562, 1501
AjnI CCWGG 5 cut(s) 181, 316, 964, 1477, 1500
AluBI AGCT 3 cut(s) 202, 1531, 1962
AluI AGCT 3 cut(s) 202, 1531, 1962
Alw26I GTCTC 7 cut(s) 48, 563, 732, 901, 1414, 1514, 2076
ApeKI GCWGC 2 cut(s) 547, 623
AspLEI GCGC 1 cut(s) 445
AsuHPI GGTGA 3 cut(s) 1943, 2009, 2042
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 534, 610
BccI CCATC 1 cut(s) 1003
BciT130I CCWGG 5 cut(s) 183, 318, 966, 1479, 1502
BciVI GTATCC 1 cut(s) 1145
BcoDI GTCTC 7 cut(s) 48, 563, 732, 901, 1414, 1514, 2076
BfaI CTAG 1 cut(s) 999
BfuI GTATCC 1 cut(s) 1145
BmrI ACTGGG 3 cut(s) 794, 1271, 1638
BmsI GCATC 2 cut(s) 1616, 1814
BmuI ACTGGG 3 cut(s) 794, 1271, 1638
BpiI GAAGAC 1 cut(s) 441
BsaI GGTCTC 2 cut(s) 732, 2076
BsaJI CCNNGG 4 cut(s) 79, 114, 1241, 1501
BsaWI WCCGGW 2 cut(s) 452, 932
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 1501
Bse118I RCCGGY 1 cut(s) 1207
Bse1I ACTGG 3 cut(s) 800, 1277, 1644
BseBI CCWGG 5 cut(s) 183, 318, 966, 1479, 1502
BseDI CCNNGG 4 cut(s) 79, 114, 1241, 1501
BseGI GGATG 1 cut(s) 1607
BseLI CCNNNNNNNGG 2 cut(s) 562, 1501
BseNI ACTGG 3 cut(s) 800, 1277, 1644
BseXI GCAGC 2 cut(s) 534, 610
BsgI GTGCAG 1 cut(s) 1150
Bsh1236I CGCG 2 cut(s) 443, 445
BsiWI CGTACG 1 cut(s) 755
BslFI GGGAC 9 cut(s) 233, 334, 402, 1012, 1088, 1155, 1326, 1626, 1758
BslI CCNNNNNNNGG 2 cut(s) 562, 1501
BsmAI GTCTC 7 cut(s) 48, 563, 732, 901, 1414, 1514, 2076
BsmBI CGTCTC 4 cut(s) 48, 563, 901, 1514
BsmFI GGGAC 9 cut(s) 233, 334, 402, 1012, 1088, 1155, 1326, 1626, 1758
Bso31I GGTCTC 2 cut(s) 732, 2076
BspFNI CGCG 2 cut(s) 443, 445
BspTNI GGTCTC 2 cut(s) 732, 2076
BsrFI RCCGGY 1 cut(s) 1207
BsrI ACTGG 3 cut(s) 800, 1277, 1644
BssAI RCCGGY 1 cut(s) 1207
BssECI CCNNGG 4 cut(s) 79, 114, 1241, 1501
Bst2UI CCWGG 5 cut(s) 183, 318, 966, 1479, 1502
BstF5I GGATG 1 cut(s) 1607
BstFNI CGCG 2 cut(s) 443, 445
BstHHI GCGC 1 cut(s) 445
BstMAI GTCTC 7 cut(s) 48, 563, 732, 901, 1414, 1514, 2076
BstMWI GCNNNNNNNGC 3 cut(s) 300, 981, 1088
BstNI CCWGG 5 cut(s) 183, 318, 966, 1479, 1502
BstUI CGCG 2 cut(s) 443, 445
BstV1I GCAGC 2 cut(s) 534, 610
BstV2I GAAGAC 1 cut(s) 441
BsuI GTATCC 1 cut(s) 1145
BtsCI GGATG 1 cut(s) 1607
CfoI GCGC 1 cut(s) 445
Cfr10I RCCGGY 1 cut(s) 1207
Csp6I GTAC 1 cut(s) 756
CviAII CATG 2 cut(s) 988, 1966
CviQI GTAC 1 cut(s) 756
DraIII CACNNNGTG 1 cut(s) 1666
EaeI YGGCCR 1 cut(s) 992
Eco31I GGTCTC 2 cut(s) 732, 2076
Eco57I CTGAAG 1 cut(s) 815
EcoRII CCWGG 5 cut(s) 181, 316, 964, 1477, 1500
Esp3I CGTCTC 4 cut(s) 48, 563, 901, 1514
FaeI CATG 2 cut(s) 991, 1969
FaiI YATR 3 cut(s) 989, 1917, 1967
FaqI GGGAC 9 cut(s) 233, 334, 402, 1012, 1088, 1155, 1326, 1626, 1758
FatI CATG 2 cut(s) 987, 1965
FokI GGATG 1 cut(s) 1594
FspBI CTAG 1 cut(s) 999
GlaI GCGC 1 cut(s) 444
HhaI GCGC 1 cut(s) 445
Hin1II CATG 2 cut(s) 991, 1969
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HinfI GANTC 1 cut(s) 1919
HphI GGTGA 3 cut(s) 1943, 2009, 2042
Hpy188I TCNGA 1 cut(s) 1679
Hpy188III TCNNGA 2 cut(s) 1063, 1842
Hpy99I CGWCG 1 cut(s) 1577
HpyAV CCTTC 1 cut(s) 839
HpyCH4IV ACGT 1 cut(s) 1575
HpyCH4V TGCA 2 cut(s) 690, 1131
HpyF10VI GCNNNNNNNGC 3 cut(s) 300, 981, 1088
HpySE526I ACGT 1 cut(s) 1575
Hsp92II CATG 2 cut(s) 991, 1969
HspAI GCGC 1 cut(s) 443
Lsp1109I GCAGC 2 cut(s) 534, 610
LweI GCATC 2 cut(s) 1616, 1814
MaeI CTAG 1 cut(s) 999
MaeII ACGT 1 cut(s) 1575
MaeIII GTNAC 4 cut(s) 575, 1001, 1576, 1812
MboII GAAGA 1 cut(s) 441
MluCI AATT 4 cut(s) 669, 1681, 1714, 1787
MmeI TCCRAC 1 cut(s) 1947
MseI TTAA 2 cut(s) 668, 2080
MvaI CCWGG 5 cut(s) 183, 318, 966, 1479, 1502
MvnI CGCG 2 cut(s) 443, 445
MwoI GCNNNNNNNGC 3 cut(s) 300, 981, 1088
NlaIII CATG 2 cut(s) 991, 1969
PcsI WCGNNNNNNNCGW 1 cut(s) 955
PfeI GAWTC 1 cut(s) 1919
Pfl23II CGTACG 1 cut(s) 755
Psp6I CCWGG 5 cut(s) 181, 316, 964, 1477, 1500
PspGI CCWGG 5 cut(s) 181, 316, 964, 1477, 1500
PspLI CGTACG 1 cut(s) 755
RsaI GTAC 1 cut(s) 757
RsaNI GTAC 1 cut(s) 756
SaqAI TTAA 2 cut(s) 668, 2080
SfaNI GCATC 2 cut(s) 1616, 1814
Sse9I AATT 4 cut(s) 669, 1681, 1714, 1787
SspMI CTAG 1 cut(s) 999
TaiI ACGT 1 cut(s) 1578
TasI AATT 4 cut(s) 669, 1681, 1714, 1787
TfiI GAWTC 1 cut(s) 1919
Tru1I TTAA 2 cut(s) 668, 2080
Tru9I TTAA 2 cut(s) 668, 2080
TseI GCWGC 2 cut(s) 547, 623
TspDTI ATGAA 2 cut(s) 976, 1954
TspGWI ACGGA 2 cut(s) 620, 654
XcmI CCANNNNNNNNNTGG 1 cut(s) 1498
XspI CTAG 1 cut(s) 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.