Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015526

Physical Location & Seq

Genomic Coordinates Forward (+)

2229980 .. 2231748

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGGCTTGTAGTCGGTGGTGGGTGGGCTATTGAAAGTTTTGAATCAAAAGGTTCTGTTGTTGTGCGTGTAAGAACTCTTAGCGAGGCAGGTCGTGTTGGCAACTTTTTAAGGAGTAGGTATGCAGTTTACTTGTATTTGATTCGTGAACGAATTTGTCCAATACTGTTCAATGTAGGAGGAGATTCTTTCCTCTTCAATAATGCATTATATTGTATCTTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

76

Amino Acids

8.49

Weight (kDa)

9.88

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27332 FvH4_1g27333 FvH4_1g28270 FvH4_7g00590 FvH4_7g00733 FvH4_7g00770 FvH4_7g01530 FvH4_7g01540 FvH4_7g01860 FvH4_7g01860 FvH4_7g01860 FvH4_7g02670 FvH4_7g05200 FvH4_7g05210
rosa_multiflora	Rmu_ssc0000386.1_g000045
rosa_rugosa	Rorug04G0069800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	153
AgsI	TTSAA	4 cut(s)	35, 44, 172, 199
ApoI	RAATTY	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	80
CviJI	RGCY	2 cut(s)	7, 29
CviKI_1	RGCY	2 cut(s)	7, 29
DdeI	CTNAG	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	208
FaiI	YATR	2 cut(s)	123, 211
HinfI	GANTC	3 cut(s)	44, 142, 185
Hpy166II	GTNNAC	2 cut(s)	130, 149
Hpy188III	TCNNGA	2 cut(s)	146, 220
Hpy8I	GTNNAC	2 cut(s)	130, 149
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	125, 206
HpyF3I	CTNAG	1 cut(s)	80
LpnPI	CCDG	1 cut(s)	75
MboII	GAAGA	1 cut(s)	187
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	3 cut(s)	79, 173, 203
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	208
PfeI	GAWTC	3 cut(s)	44, 142, 185
SaqAI	TTAA	1 cut(s)	110
SetI	ASST	3 cut(s)	55, 94, 122
SgeI	CNNG	7 cut(s)	20, 80, 97, 102, 107, 145, 158
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	168
TasI	AATT	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	44, 142, 185
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
XapI	RAATTY	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.