Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015526

Physical Location & Seq

Genomic Coordinates Reverse (-)

1149169 .. 1160311

Gene Structure 11143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGCCAAGCTAAATCTGTGAATTCCAGCCAAATCATCAAGAATTTGGAGAAATATCGAGTTTTGGAGATTTTAAAAGTTAAGGATTTGGCCATCTTGAGCCACCGCGGCTGCGCCGTTAACTCAATCGGCGCCAAGGTGTTAGAGTCTGATTTTGAAAAGCCTACTGCACCCCTTCCTGCAGCGATTGTTGCTTGTGTTCCAAAGAAACTTGAGGTTCCAAAAGAATTGATATCTTCATCGCAATTACAAGATTTGAGGCAGGAGCGCATGCCATCGTTTATCACCTGTAGCCCTGAAACAAGTAGAACTTTTTGTGTGAACCACATGAGTAATTGCTCATCGGAGTCCACTAAGGAATTTATTTCCAAGGGACTCCGCTTTACATTAAGAGATAATGGGATGCGTGCAGCTTTCCAATTACTTCACATGATACTTGAGTGTCCCATAAGTTTTTACCCCTTTCCGCTTCGTGCGGTGTCCTGTCGGTTACTACCCCTTACCGCTTCGTGCGGCGTCCCCTCGGTTATTACCCCTACCGCTTCGTGCGGCGTCCCGTCGGTTTTTACCCCTTTCCGCTTTGTGCGGCGTCCTGTCGGTTATTACCCCTTACTGCTTCGTGCGGCGTCCCGTCGATTATTACCCCTACCGTTTCGGGCGGCGTCCCTTCGTTTGTTATCCTACTGTTTCGTGCGGCGTCCCATCGGTTATTACCCATTACCGCTTCGTGCGCCGTCCCTTCGGTTATTACCCCTACTGCTTCGTGCGGCGTCTCTTCGGTTATTACACCTATCACTTCGTGCGGCGTTCCGTCGATTATCACCCCTACTGCTTCATACGGCGTCCCCTCGGTTATTACCCATTACCGCTTCGTGCGGCGTTCCGTCGGTTATCACCCTTACTGCTTCATGCAGCGTCCCTTCGGTTATCACCCCTACCGCTTCGTGCTGCGTCCCCTTGGTTATTACCCATTACCGCTTCATGCGGCGTCCCCTCGGTTATTACCCATTACCGCTTCATGCGGCGTCCCATCGGTTATTACCCCATACCGTTTCGTCCGGCGTCCCGTCGGTTGTTACCCCTTTCCGCGGTTATTTCCCCTACCGCTTCGTGCGGCATCCCTTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

377

Amino Acids

41.75

Weight (kDa)

10.3

Isoelectric Point (pI)

65.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27332 FvH4_1g27333 FvH4_1g28270 FvH4_7g00590 FvH4_7g00733 FvH4_7g00770 FvH4_7g01530 FvH4_7g01540 FvH4_7g01860 FvH4_7g01860 FvH4_7g01860 FvH4_7g02670 FvH4_7g05200 FvH4_7g05210
rosa_multiflora	Rmu_ssc0000386.1_g000045
rosa_rugosa	Rorug04G0069800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccII	CGCG	2 cut(s)	108, 1089
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	22, 43, 359
AdeI	CACNNNGTG	1 cut(s)	800
AfiI	CCNNNNNNNGG	1 cut(s)	1088
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	2 cut(s)	11, 413
AluI	AGCT	2 cut(s)	11, 413
Alw26I	GTCTC	1 cut(s)	777
AoxI	GGCC	2 cut(s)	4, 90
ApeKI	GCWGC	5 cut(s)	111, 182, 410, 912, 948
ApoI	RAATTY	3 cut(s)	22, 43, 359
AspLEI	GCGC	4 cut(s)	116, 134, 270, 733
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	277, 813, 886, 922
BaeI	ACNNNNGTAYC	2 cut(s)	425, 458
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	131
BbvI	GCAGC	5 cut(s)	98, 194, 422, 924, 935
BccI	CCATC	4 cut(s)	101, 283, 710, 1038
BceAI	ACGGC	3 cut(s)	101, 718, 855
BcoDI	GTCTC	1 cut(s)	777
BfmI	CTRYAG	2 cut(s)	180, 289
BfoI	RGCGCY	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	133, 219
BmsI	GCATC	2 cut(s)	393, 1126
BpuEI	CTTGAG	3 cut(s)	118, 233, 458
BsaJI	CCNNGG	8 cut(s)	106, 135, 369, 522, 848, 957, 994, 1087
Bsc4I	CCNNNNNNNGG	1 cut(s)	1088
BseDI	CCNNGG	8 cut(s)	106, 135, 369, 522, 848, 957, 994, 1087
BseGI	GGATG	2 cut(s)	408, 1117
BseLI	CCNNNNNNNGG	1 cut(s)	1088
BseXI	GCAGC	5 cut(s)	98, 194, 422, 924, 935
BsgI	GTGCAG	2 cut(s)	153, 429
Bsh1236I	CGCG	2 cut(s)	108, 1089
BshFI	GGCC	2 cut(s)	6, 92
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	1059
BslI	CCNNNNNNNGG	1 cut(s)	1088
BsmAI	GTCTC	1 cut(s)	777
BsmBI	CGTCTC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	6, 92
BspANI	GGCC	2 cut(s)	6, 92
BspFNI	CGCG	2 cut(s)	108, 1089
BspLI	GGNNCC	2 cut(s)	133, 219
BspMAI	CTGCAG	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	131
BssECI	CCNNGG	8 cut(s)	106, 135, 369, 522, 848, 957, 994, 1087
BssT1I	CCWWGG	3 cut(s)	135, 369, 957
Bst4CI	ACNGT	3 cut(s)	651, 686, 1051
Bst6I	CTCTTC	1 cut(s)	780
BstC8I	GCNNGC	2 cut(s)	272, 408
BstDEI	CTNAG	1 cut(s)	354
BstDSI	CCRYGG	2 cut(s)	106, 1087
BstF5I	GGATG	2 cut(s)	408, 1117
BstFNI	CGCG	2 cut(s)	108, 1089
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	4 cut(s)	116, 134, 270, 733
BstMAI	GTCTC	1 cut(s)	777
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 191, 730
BstNSI	RCATGY	1 cut(s)	274
BstSFI	CTRYAG	2 cut(s)	180, 289
BstUI	CGCG	2 cut(s)	108, 1089
BstV1I	GCAGC	5 cut(s)	98, 194, 422, 924, 935
BsuRI	GGCC	2 cut(s)	6, 92
BtgI	CCRYGG	2 cut(s)	106, 1087
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	408, 1117
Cac8I	GCNNGC	2 cut(s)	272, 408
CfoI	GCGC	4 cut(s)	116, 134, 270, 733
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	2 cut(s)	109, 1090
CviAII	CATG	6 cut(s)	271, 328, 430, 909, 982, 1019
CviJI	RGCY	9 cut(s)	6, 11, 30, 92, 102, 111, 163, 294, 413
CviKI_1	RGCY	9 cut(s)	6, 11, 30, 92, 102, 111, 163, 294, 413
DdeI	CTNAG	1 cut(s)	354
DinI	GGCGCC	1 cut(s)	133
DraI	TTTAAA	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Eco130I	CCWWGG	3 cut(s)	135, 369, 957
Eco32I	GATATC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	3 cut(s)	135, 369, 957
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	3 cut(s)	135, 369, 957
Esp3I	CGTCTC	1 cut(s)	777
FaeI	CATG	6 cut(s)	274, 331, 433, 912, 985, 1022
FaiI	YATR	9 cut(s)	272, 329, 431, 449, 837, 910, 983, 1020, 1047
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FatI	CATG	6 cut(s)	270, 327, 429, 908, 981, 1018
FokI	GGATG	2 cut(s)	415, 1104
GlaI	GCGC	4 cut(s)	115, 133, 269, 732
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	6, 92
HapII	CCGG	1 cut(s)	1059
HhaI	GCGC	4 cut(s)	116, 134, 270, 733
Hin1II	CATG	6 cut(s)	274, 331, 433, 912, 985, 1022
Hin6I	GCGC	4 cut(s)	114, 132, 268, 731
HinP1I	GCGC	4 cut(s)	114, 132, 268, 731
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	146, 347, 375
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	4 cut(s)	277, 813, 886, 922
Hpy166II	GTNNAC	3 cut(s)	121, 322, 351
Hpy188I	TCNGA	2 cut(s)	151, 346
Hpy188III	TCNNGA	2 cut(s)	40, 97
Hpy8I	GTNNAC	3 cut(s)	121, 322, 351
Hpy99I	CGWCG	5 cut(s)	562, 636, 816, 889, 1072
HpyAV	CCTTC	4 cut(s)	185, 677, 749, 930
HpyCH4III	ACNGT	3 cut(s)	651, 686, 1051
HpyCH4V	TGCA	4 cut(s)	170, 182, 410, 912
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 191, 730
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	6 cut(s)	274, 331, 433, 912, 985, 1022
HspAI	GCGC	4 cut(s)	114, 132, 268, 731
KasI	GGCGCC	1 cut(s)	131
KspAI	GTTAAC	1 cut(s)	121
KspI	CCGCGG	2 cut(s)	109, 1090
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	8 cut(s)	40, 192, 248, 301, 309, 496, 606, 1072
Lsp1109I	GCAGC	5 cut(s)	98, 194, 422, 924, 935
LweI	GCATC	2 cut(s)	393, 1126
MaeIII	GTNAC	2 cut(s)	489, 1075
MboII	GAAGA	2 cut(s)	228, 767
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	7 cut(s)	22, 43, 227, 245, 334, 359, 419
MluNI	TGGCCA	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	3 cut(s)	155, 356, 369
MnlI	CCTC	5 cut(s)	208, 252, 532, 858, 1004
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	5 cut(s)	74, 81, 120, 389, 1129
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	2 cut(s)	108, 1089
MspI	CCGG	1 cut(s)	1059
MvnI	CGCG	2 cut(s)	108, 1089
MwoI	GCNNNNNNNGC	3 cut(s)	108, 191, 730
NarI	GGCGCC	1 cut(s)	132
NlaIII	CATG	6 cut(s)	274, 331, 433, 912, 985, 1022
NlaIV	GGNNCC	2 cut(s)	133, 219
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PleI	GAGTC	3 cut(s)	154, 355, 369
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	3 cut(s)	154, 355, 369
PspN4I	GGNNCC	2 cut(s)	133, 219
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	184
SacII	CCGCGG	2 cut(s)	109, 1090
SaqAI	TTAA	5 cut(s)	74, 81, 120, 389, 1129
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	155, 356, 369
SetI	ASST	6 cut(s)	13, 141, 219, 290, 415, 792
SfaNI	GCATC	2 cut(s)	393, 1126
SfcI	CTRYAG	2 cut(s)	180, 289
SfoI	GGCGCC	1 cut(s)	133
Sfr303I	CCGCGG	2 cut(s)	109, 1090
SgrBI	CCGCGG	2 cut(s)	109, 1090
SmlI	CTYRAG	3 cut(s)	97, 212, 437
SmoI	CTYRAG	3 cut(s)	97, 212, 437
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	7 cut(s)	22, 43, 227, 245, 334, 359, 419
SspDI	GGCGCC	1 cut(s)	131
StyI	CCWWGG	3 cut(s)	135, 369, 957
TaaI	ACNGT	3 cut(s)	651, 686, 1051
TaqI	TCGA	3 cut(s)	58, 634, 814
TasI	AATT	7 cut(s)	22, 43, 227, 245, 334, 359, 419
Tru1I	TTAA	5 cut(s)	74, 81, 120, 389, 1129
Tru9I	TTAA	5 cut(s)	74, 81, 120, 389, 1129
TseI	GCWGC	5 cut(s)	111, 182, 410, 912, 948
TspDTI	ATGAA	5 cut(s)	228, 824, 897, 970, 1007
TspGWI	ACGGA	2 cut(s)	800, 873
XapI	RAATTY	3 cut(s)	22, 43, 359
XceI	RCATGY	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.