Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015526

Physical Location & Seq

Genomic Coordinates Reverse (-)

5564763 .. 5567806

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGAGGCTTGAGACTTCGAGTTGGGTTTCGGCAGAAGAAGGAGAGAAGGATGGTGCTTTGGTGTTGGCGGTGGATGACAGAAGAAAAGAAAGAGAAAGGAGAAGGGAAAAGAGGGATGATGGTACTAGAGCTCGTCTTTCAAATGGAATTTCTGTAAACTACAAGATTTCAAAAAGTGAGGCTCGGGGAGGTTTGATGAGGCTTATAGTCGGTGGTGGATGGGCTACCGAAAGTTCTGAATCAAAAGGTTCTGTTGTTGTGGGTGTAAGAACTCTTAGTGAGGCAGGTAGAATTTTCTGTGTGAACCACTTGAGTAATTGCTCATCGGAGTACACGGAGGAATTTATTTCTAAGGAACTCCGCTTCACTTTAAGAGATAATGGGATGCGTGCCGCTTTCCAATTGCTTCACATGGTACTTGAGATCGTAGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

147

Amino Acids

16.38

Weight (kDa)

6.76

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27332 FvH4_1g27333 FvH4_1g28270 FvH4_7g00590 FvH4_7g00733 FvH4_7g00770 FvH4_7g01530 FvH4_7g01540 FvH4_7g01860 FvH4_7g01860 FvH4_7g01860 FvH4_7g02670 FvH4_7g05200 FvH4_7g05210
rosa_multiflora	Rmu_ssc0000386.1_g000045
rosa_rugosa	Rorug04G0069800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AciI	CCGC	3 cut(s)	71, 364, 396
AcsI	RAATTY	3 cut(s)	150, 294, 344
AfaI	GTAC	3 cut(s)	127, 335, 420
AgsI	TTSAA	2 cut(s)	144, 174
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	186
ApoI	RAATTY	3 cut(s)	150, 294, 344
AvaI	CYCGRG	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	3 cut(s)	47, 116, 216
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	32, 334
BseGI	GGATG	5 cut(s)	58, 82, 124, 227, 393
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	426
BspACI	CCGC	3 cut(s)	71, 364, 396
BspMI	ACCTGC	1 cut(s)	278
BssMI	GATC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	278, 354
BstF5I	GGATG	5 cut(s)	58, 82, 124, 227, 393
BstKTI	GATC	1 cut(s)	429
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	426
BtsCI	GGATG	5 cut(s)	58, 82, 124, 227, 393
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	126, 334, 419
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	5 cut(s)	10, 134, 185, 205, 227
CviKI_1	RGCY	5 cut(s)	10, 134, 185, 205, 227
CviQI	GTAC	3 cut(s)	126, 334, 419
DdeI	CTNAG	2 cut(s)	278, 354
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	1 cut(s)	418
FaiI	YATR	2 cut(s)	209, 416
FatI	CATG	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	5 cut(s)	65, 89, 131, 234, 400
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	242
Hpy166II	GTNNAC	4 cut(s)	160, 307, 336, 436
Hpy188I	TCNGA	2 cut(s)	241, 331
Hpy8I	GTNNAC	4 cut(s)	160, 307, 336, 436
HpyAV	CCTTC	3 cut(s)	35, 43, 99
HpyF3I	CTNAG	2 cut(s)	278, 354
Hsp92II	CATG	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	426
LpnPI	CCDG	1 cut(s)	273
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	129
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	2 cut(s)	50, 96
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	5 cut(s)	150, 294, 319, 344, 404
MnlI	CCTC	6 cut(s)	108, 175, 185, 195, 277, 334
MseI	TTAA	1 cut(s)	374
MunI	CAATTG	1 cut(s)	404
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	136
RsaI	GTAC	3 cut(s)	127, 335, 420
RsaNI	GTAC	3 cut(s)	126, 334, 419
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	136, 196, 253, 292
SfaNI	GCATC	1 cut(s)	378
SmlI	CTYRAG	3 cut(s)	11, 313, 422
SmoI	CTYRAG	3 cut(s)	11, 313, 422
Sse9I	AATT	5 cut(s)	150, 294, 319, 344, 404
SsiI	CCGC	3 cut(s)	71, 364, 396
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	136
TaqI	TCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	150, 294, 319, 344, 404
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TspGWI	ACGGA	1 cut(s)	353
XapI	RAATTY	3 cut(s)	150, 294, 344
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.