FvH4_1g29110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016742
Physical Location & Seq
Forward (+)
21684794 .. 21685830
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29110.t1

Sequence Viewer

Length: 573 bp
ATGCATCCTTCCACCATTTCAGCTCTTACAGGAAACCAACTCGTCAACCCATCAATGGCATTGCTTCCACGAAGTTGGAATAACTCTCCACCAGTTGCACTTATCATGATGCTGATCATTTTGTCTATTTCACTTCCAGGGAATTCAGCCGGGGTCACTGTCACTTCTGATCAAAAGAACCAACAACAAACAGTGACAGTTTCGTCCACTCAGAAAGAAGAAACCGACACTTCTACCACTACCGGAGAAATCAAGTGTGGAACATGCCCTTGCGTAAACCCATGTCAACAGCCGCAGCAGCAGCTTCCACCACCGCGGCCTCCGCCAGCAATGACCGCTGGTTGCACTCCAGCTTTACCTGCAGCTCCAGCATTATTGGCGCCGCCGCCTCCAAGGTTCATTTATGTGACGGGTATTCCAGGAGAACTGTACAAAACAGATACTTACGGATCATCCTATTCCTATGATTTTTACTCCGCTGCTGCTCCTCCGCCATATCCAAATATGATCATCACCATGCCACCAGCCTTGCTCGTTATCTTGCTCATGGCTTTTGGGGGGATGCTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.08

Weight (kDa)

5.63

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016742)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29110
malus_domestica MD17G1256500.v1.1
prunus_persica Prupe.3G159100_v2.0.a1
pyrus_communis pycom17g25870
rosa_chinensis RchiOBHm_Chr3g0493521
rosa_laevigata RLG00000022709
rosa_multiflora Rmu_sc0002343.1_g000062
rosa_roxburghii Rroxscaffold_6G00391520
rosa_rugosa Rorug03G0261700
rosa_samantha Rh3AG310600 Rh3BG346800 Rh3CG344600 Rh3DG345900
rosa_wichuraiana Rw3G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 1 cut(s) 316
AciI CCGC 9 cut(s) 293, 314, 316, 323, 336, 383, 386, 477, 491
AclWI GGATC 1 cut(s) 457
AcsI RAATTY 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 55
AjnI CCWGG 2 cut(s) 136, 418
AluBI AGCT 4 cut(s) 23, 304, 353, 365
AluI AGCT 4 cut(s) 23, 304, 353, 365
AlwI GGATC 1 cut(s) 457
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 6 cut(s) 295, 298, 301, 362, 479, 482
ApoI RAATTY 1 cut(s) 142
AspLEI GCGC 1 cut(s) 382
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 505
BanI GGYRCC 1 cut(s) 379
BbvI GCAGC 6 cut(s) 307, 310, 313, 374, 466, 469
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 138, 420
BclI TGATCA 3 cut(s) 114, 169, 507
BcnI CCSGG 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 367
Bme1390I CCNGG 3 cut(s) 138, 151, 420
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 3 cut(s) 138, 151, 420
BmsI GCATC 3 cut(s) 13, 99, 552
BpmI CTGGAG 2 cut(s) 333, 351
BpuMI CCSGG 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 4 cut(s) 137, 150, 314, 392
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 59, 336
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 2 cut(s) 138, 420
BseDI CCNNGG 4 cut(s) 137, 150, 314, 392
BseGI GGATG 3 cut(s) 4, 452, 567
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 2 cut(s) 59, 336
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 477
BseXI GCAGC 6 cut(s) 307, 310, 313, 374, 466, 469
Bsh1236I CGCG 1 cut(s) 316
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 379
BsiSI CCGG 2 cut(s) 150, 243
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 4 cut(s) 114, 169, 449, 507
BspACI CCGC 9 cut(s) 293, 314, 316, 323, 336, 383, 386, 477, 491
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 381
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 379
BsrDI GCAATG 2 cut(s) 59, 336
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 4 cut(s) 137, 150, 314, 392
BssMI GATC 4 cut(s) 114, 169, 449, 507
BssNI GRCGYC 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 138, 420
Bst4CI ACNGT 4 cut(s) 160, 193, 199, 429
BstACI GRCGYC 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 314
BstF5I GGATG 3 cut(s) 4, 452, 567
BstFNI CGCG 1 cut(s) 316
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 4 cut(s) 117, 172, 452, 510
BstMBI GATC 4 cut(s) 114, 169, 449, 507
BstMWI GCNNNNNNNGC 7 cut(s) 298, 301, 322, 335, 359, 368, 377
BstNI CCWGG 2 cut(s) 138, 420
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 3 cut(s) 136, 149, 418
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 6 cut(s) 307, 310, 313, 374, 466, 469
BstXI CCANNNNNNTGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 3 cut(s) 4, 452, 567
BtsIMutI CAGTG 2 cut(s) 156, 198
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 382
Cfr42I CCGCGG 1 cut(s) 317
Csp6I GTAC 1 cut(s) 430
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviAII CATG 5 cut(s) 106, 264, 282, 517, 547
CviJI RGCY 9 cut(s) 23, 149, 292, 304, 319, 353, 365, 527, 551
CviKI_1 RGCY 9 cut(s) 23, 149, 292, 304, 319, 353, 365, 527, 551
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 1 cut(s) 210
DinI GGCGCC 1 cut(s) 381
DpnI GATC 4 cut(s) 116, 171, 451, 509
DpnII GATC 4 cut(s) 114, 169, 449, 507
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
EciI GGCGGA 2 cut(s) 312, 480
Eco130I CCWWGG 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 136, 418
EcoT14I CCWWGG 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 381
EheI GGCGCC 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 5 cut(s) 109, 267, 285, 520, 550
FaiI YATR 9 cut(s) 107, 265, 283, 405, 465, 496, 506, 518, 548
FatI CATG 5 cut(s) 105, 263, 281, 516, 546
FbaI TGATCA 3 cut(s) 114, 169, 507
FokI GGATG 1 cut(s) 439
GlaI GCGC 1 cut(s) 381
GsuI CTGGAG 2 cut(s) 333, 351
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 1 cut(s) 319
HapII CCGG 2 cut(s) 150, 243
HhaI GCGC 1 cut(s) 382
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 5 cut(s) 109, 267, 285, 520, 550
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 2 cut(s) 46, 287
HindII GTYRAC 2 cut(s) 46, 287
HpaII CCGG 2 cut(s) 150, 243
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 4 cut(s) 46, 207, 277, 287
Hpy188I TCNGA 2 cut(s) 169, 213
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 4 cut(s) 46, 207, 277, 287
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 4 cut(s) 160, 193, 199, 429
HpyCH4V TGCA 4 cut(s) 4, 98, 345, 362
HpyF10VI GCNNNNNNNGC 7 cut(s) 298, 301, 322, 335, 359, 368, 377
HpyF3I CTNAG 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 5 cut(s) 109, 267, 285, 520, 550
HspAI GCGC 1 cut(s) 380
KasI GGCGCC 1 cut(s) 379
Ksp22I TGATCA 3 cut(s) 114, 169, 507
KspI CCGCGG 1 cut(s) 317
Kzo9I GATC 4 cut(s) 114, 169, 449, 507
LmnI GCTCC 2 cut(s) 370, 490
Lsp1109I GCAGC 6 cut(s) 307, 310, 313, 374, 466, 469
LweI GCATC 3 cut(s) 13, 99, 552
MaeIII GTNAC 4 cut(s) 154, 160, 193, 406
MalI GATC 4 cut(s) 116, 171, 451, 509
MboI GATC 4 cut(s) 114, 169, 449, 507
MboII GAAGA 1 cut(s) 230
MluCI AATT 1 cut(s) 142
Mly113I GGCGCC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 3 cut(s) 330, 399, 498
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 404, 515
MspA1I CMGCKG 3 cut(s) 316, 338, 479
MspI CCGG 2 cut(s) 150, 243
MspR9I CCNGG 3 cut(s) 138, 151, 420
MvaI CCWGG 2 cut(s) 138, 420
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 7 cut(s) 298, 301, 322, 335, 359, 368, 377
NarI GGCGCC 1 cut(s) 380
NciI CCSGG 1 cut(s) 151
NdeII GATC 4 cut(s) 114, 169, 449, 507
NlaIII CATG 5 cut(s) 109, 267, 285, 520, 550
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 4 cut(s) 154, 160, 193, 406
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 267
PagI TCATGA 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 418
PluTI GGCGCC 1 cut(s) 383
Psp6I CCWGG 2 cut(s) 136, 418
PspGI CCWGG 2 cut(s) 136, 418
PspN4I GGNNCC 1 cut(s) 381
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 2 cut(s) 404, 515
SacII CCGCGG 1 cut(s) 317
Sau3AI GATC 4 cut(s) 114, 169, 449, 507
ScrFI CCNGG 3 cut(s) 138, 151, 420
SetI ASST 6 cut(s) 25, 306, 355, 361, 367, 398
SfaNI GCATC 3 cut(s) 13, 99, 552
SfcI CTRYAG 1 cut(s) 360
SfoI GGCGCC 1 cut(s) 381
Sfr303I CCGCGG 1 cut(s) 317
SgrBI CCGCGG 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 404, 515
Sse9I AATT 1 cut(s) 142
SsiI CCGC 9 cut(s) 293, 314, 316, 323, 336, 383, 386, 477, 491
SspDI GGCGCC 1 cut(s) 379
StyD4I CCNGG 3 cut(s) 136, 149, 418
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 4 cut(s) 160, 193, 199, 429
TasI AATT 1 cut(s) 142
TatI WGTACW 1 cut(s) 429
TauI GCSGC 4 cut(s) 295, 319, 385, 388
TscAI CASTG 2 cut(s) 163, 198
TseFI GTSAC 4 cut(s) 154, 160, 193, 406
TseI GCWGC 6 cut(s) 295, 298, 301, 362, 479, 482
Tsp45I GTSAC 4 cut(s) 154, 160, 193, 406
TspDTI ATGAA 1 cut(s) 388
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 2 cut(s) 163, 198
XapI RAATTY 1 cut(s) 142
XceI RCATGY 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.