Prupe.3G159100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016742
Physical Location & Seq
Forward (+)
17763275 .. 17763971
697 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G159100.1

Sequence Viewer

Length: 471 bp
ATGGCATTGCATCCACATCAAACACTTCTTTTCATCATGCTTTTGATTTGGTCTTCAAAGAGTGTCATGACCACTTCTGATCATGAAAACCAAAATGATCATCATCAACAAACACTGGTATCTCAGAAACAAGAAGTTGATACGGGAATAAAATGCGGATCATGCCCTTGTGTGAACCCATGTGAGCAGCAGCAGGTGCTTCCACCTCCGCCACCGCCGCCTCCTTGTCCTCCTCCTCCTCCTCCTCCAAAGGCTCCAACAACAACAACTCAAGATTGCCCGCCAAACCCATATGTACCGCCACCTCCTCCAAGGTTTGTTTACGTGACAGGTCTGCCAGGGGATGTGTATCAGTACCAAACAGATGCATATGCATATTACTCACCTGCTCCACGTCATCTCTATAACTTGTGGCTGCTGCTTTTGGTGACATTTATTTGGCCAGGATTTCAATATATATTACTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.56

Weight (kDa)

6.0

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016742)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29110
malus_domestica MD17G1256500.v1.1
prunus_persica Prupe.3G159100_v2.0.a1
pyrus_communis pycom17g25870
rosa_chinensis RchiOBHm_Chr3g0493521
rosa_laevigata RLG00000022709
rosa_multiflora Rmu_sc0002343.1_g000062
rosa_roxburghii Rroxscaffold_6G00391520
rosa_rugosa Rorug03G0261700
rosa_samantha Rh3AG310600 Rh3BG346800 Rh3CG344600 Rh3DG345900
rosa_wichuraiana Rw3G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 184, 394
Acc36I ACCTGC 2 cut(s) 184, 394
AciI CCGC 6 cut(s) 156, 209, 215, 218, 281, 299
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 440
AfaI GTAC 2 cut(s) 297, 356
AgsI TTSAA 2 cut(s) 57, 452
AjiI CACGTC 1 cut(s) 395
AjnI CCWGG 2 cut(s) 337, 442
AlwI GGATC 1 cut(s) 166
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 187, 190, 415, 418
AsuHPI GGTGA 2 cut(s) 375, 439
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 4 cut(s) 199, 202, 402, 405
BciT130I CCWGG 2 cut(s) 339, 444
BclI TGATCA 2 cut(s) 79, 97
BfuAI ACCTGC 2 cut(s) 184, 394
BisI GCNGC 5 cut(s) 188, 191, 218, 416, 419
BlsI GCNGC 5 cut(s) 189, 192, 219, 417, 420
Bme1390I CCNGG 2 cut(s) 339, 444
BmgBI CACGTC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 2 cut(s) 339, 444
BmsI GCATC 2 cut(s) 19, 355
BpiI GAAGAC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 325
BsaBI GATNNNNATC 2 cut(s) 102, 348
BsaJI CCNNGG 2 cut(s) 311, 338
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 5
Bse8I GATNNNNATC 2 cut(s) 102, 348
BseBI CCWGG 2 cut(s) 339, 444
BseDI CCNNGG 2 cut(s) 311, 338
BseGI GGATG 2 cut(s) 10, 349
BseJI GATNNNNATC 2 cut(s) 102, 348
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 6 cut(s) 222, 225, 228, 231, 234, 297
BseXI GCAGC 4 cut(s) 199, 202, 402, 405
BshFI GGCC 1 cut(s) 442
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 3 cut(s) 79, 97, 158
BspACI CCGC 6 cut(s) 156, 209, 215, 218, 281, 299
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 2 cut(s) 66, 82
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 2 cut(s) 184, 394
BspPI GGATC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 311, 338
BssMI GATC 3 cut(s) 79, 97, 158
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 339, 444
BstAPI GCANNNNNTGC 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 10, 349
BstKTI GATC 3 cut(s) 82, 100, 161
BstMBI GATC 3 cut(s) 79, 97, 158
BstMWI GCNNNNNNNGC 3 cut(s) 162, 196, 217
BstNI CCWGG 2 cut(s) 339, 444
BstSCI CCNGG 2 cut(s) 337, 442
BstV1I GCAGC 4 cut(s) 199, 202, 402, 405
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 442
BtrI CACGTC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 10, 349
BtsIMutI CAGTG 1 cut(s) 113
BveI ACCTGC 2 cut(s) 184, 394
Cac8I GCNNGC 1 cut(s) 281
CciI TCATGA 2 cut(s) 66, 82
Csp6I GTAC 2 cut(s) 296, 355
CviAII CATG 5 cut(s) 37, 67, 83, 162, 180
CviJI RGCY 3 cut(s) 254, 415, 442
CviKI_1 RGCY 3 cut(s) 254, 415, 442
CviQI GTAC 2 cut(s) 296, 355
DdeI CTNAG 1 cut(s) 123
DpnI GATC 3 cut(s) 81, 99, 160
DpnII GATC 3 cut(s) 79, 97, 158
EaeI YGGCCR 1 cut(s) 440
EciI GGCGGA 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 337, 442
EcoT14I CCWWGG 1 cut(s) 311
EcoT22I ATGCAT 2 cut(s) 370, 376
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 5 cut(s) 40, 70, 86, 165, 183
FatI CATG 5 cut(s) 36, 66, 82, 161, 179
FauI CCCGC 1 cut(s) 288
FauNDI CATATG 2 cut(s) 292, 370
FbaI TGATCA 2 cut(s) 79, 97
Fnu4HI GCNGC 5 cut(s) 188, 191, 218, 416, 419
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 5 cut(s) 188, 191, 218, 416, 419
GluI GCNGC 5 cut(s) 188, 191, 218, 416, 419
HaeIII GGCC 1 cut(s) 442
Hin1II CATG 5 cut(s) 40, 70, 86, 165, 183
HphI GGTGA 2 cut(s) 375, 439
Hpy166II GTNNAC 2 cut(s) 175, 322
Hpy188I TCNGA 2 cut(s) 79, 126
Hpy188III TCNNGA 3 cut(s) 67, 83, 272
Hpy8I GTNNAC 2 cut(s) 175, 322
HpyCH4IV ACGT 2 cut(s) 324, 394
HpyCH4V TGCA 3 cut(s) 10, 368, 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 196, 217
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 2 cut(s) 324, 394
Hsp92II CATG 5 cut(s) 40, 70, 86, 165, 183
Ksp22I TGATCA 2 cut(s) 79, 97
Kzo9I GATC 3 cut(s) 79, 97, 158
LmnI GCTCC 2 cut(s) 259, 394
LpnPI CCDG 8 cut(s) 101, 179, 315, 324, 351, 399, 429, 456
Lsp1109I GCAGC 4 cut(s) 199, 202, 402, 405
LweI GCATC 2 cut(s) 19, 355
MaeII ACGT 2 cut(s) 324, 394
MaeIII GTNAC 2 cut(s) 325, 427
MalI GATC 3 cut(s) 81, 99, 160
MboI GATC 3 cut(s) 79, 97, 158
MboII GAAGA 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 442
MluNI TGGCCA 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 442
Mph1103I ATGCAT 2 cut(s) 370, 376
MscI TGGCCA 1 cut(s) 442
Msp20I TGGCCA 1 cut(s) 442
MspR9I CCNGG 2 cut(s) 339, 444
MvaI CCWGG 2 cut(s) 339, 444
MwoI GCNNNNNNNGC 3 cut(s) 162, 196, 217
NdeI CATATG 2 cut(s) 292, 370
NdeII GATC 3 cut(s) 79, 97, 158
NlaIII CATG 5 cut(s) 40, 70, 86, 165, 183
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 325, 427
NsiI ATGCAT 2 cut(s) 370, 376
PagI TCATGA 2 cut(s) 66, 82
PaqCI CACCTGC 2 cut(s) 184, 394
PkrI GCNGC 5 cut(s) 189, 192, 219, 417, 420
Ppu21I YACGTR 1 cut(s) 325
Psp6I CCWGG 2 cut(s) 337, 442
PspGI CCWGG 2 cut(s) 337, 442
PspN4I GGNNCC 1 cut(s) 255
RsaI GTAC 2 cut(s) 297, 356
RsaNI GTAC 2 cut(s) 296, 355
SatI GCNGC 5 cut(s) 188, 191, 218, 416, 419
Sau3AI GATC 3 cut(s) 79, 97, 158
ScrFI CCNGG 2 cut(s) 339, 444
SetI ASST 8 cut(s) 198, 208, 307, 317, 327, 334, 388, 397
SfaNI GCATC 2 cut(s) 19, 355
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
SsiI CCGC 6 cut(s) 156, 209, 215, 218, 281, 299
StyD4I CCNGG 2 cut(s) 337, 442
StyI CCWWGG 1 cut(s) 311
TaiI ACGT 2 cut(s) 327, 397
TauI GCSGC 1 cut(s) 220
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 2 cut(s) 325, 427
TseI GCWGC 4 cut(s) 187, 190, 415, 418
Tsp45I GTSAC 2 cut(s) 325, 427
TspDTI ATGAA 2 cut(s) 22, 99
TspRI CASTG 1 cut(s) 120
Zsp2I ATGCAT 2 cut(s) 370, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.