pycom17g25870

Belongs to the PI3 PI4-kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016742
Physical Location & Seq
Forward (+)
24207056 .. 24207849
794 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g25870.2

Sequence Viewer

Length: 648 bp
ATGCATTTACAACATCCACATGCAATTTCCACAAGCTATCTAGCTGGCATATCGAAAAACAAATTTAACACCCCTTACATTCCTTTCTTTTCCAACCCACTAGTACGCTCGCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCCGGAAATCAATGGCATCGCCACCACATCAAACACTCGTTATCATGCTTTTGATTTGTTCTTCAGCAAGTGTCACCGCCACTACTTCTGATGATCATCAACCTTTGGTGTCTAAGGAAGTGAACGCGGGGATAAAATGTGGAACGTGCCCTTGTGTCAACCCATGTGAACAGCAACAGCTGCCTCCACCACCTCCGCCGCCACCACCACCGCCAAAGACTCCAACGACAACTCAAGATTGCAACCCTAATCCAAGCCAATACGTGCCAGTACCGCCGCCGCCTCCGAGGTTTGTATACATGACAGGTCCACCTGGAAATGTACTGCCGCCGCCTCCGAGGTTTGCTTACGTGACAGGTCTACCTGGAGATGTGTATCAGTACCAAACCGATGCATATGCATATTACTCAGCTGCTCCACGTCATCACTACAGCATGGGGTTGCTACTCTTGTTGGTATGTGCAGAAGTAATATTGGCTTTTGGGGGACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004430 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012506 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017016 GO:0017137 GO:0019637 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0030258 GO:0030659 GO:0031090 GO:0031267 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035556 GO:0035618 GO:0035619 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044706 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048015 GO:0048017 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051716 GO:0052742 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:0120038 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 map00562 map01100 map04070
Pfam Domains
Protein Families
PI3_PI4_kinase

Protein Analysis

216

Amino Acids

23.15

Weight (kDa)

8.46

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016742)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29110
malus_domestica MD17G1256500.v1.1
prunus_persica Prupe.3G159100_v2.0.a1
pyrus_communis pycom17g25870
rosa_chinensis RchiOBHm_Chr3g0493521
rosa_laevigata RLG00000022709
rosa_multiflora Rmu_sc0002343.1_g000062
rosa_roxburghii Rroxscaffold_6G00391520
rosa_rugosa Rorug03G0261700
rosa_samantha Rh3AG310600 Rh3BG346800 Rh3CG344600 Rh3DG345900
rosa_wichuraiana Rw3G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 450, 514
AccII CGCG 1 cut(s) 281
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 4 cut(s) 105, 426, 477, 536
AhlI ACTAGT 1 cut(s) 100
AjiI CACGTC 1 cut(s) 575
AjnI CCWGG 2 cut(s) 466, 517
AluBI AGCT 4 cut(s) 36, 44, 334, 566
AluI AGCT 4 cut(s) 36, 44, 334, 566
ApeKI GCWGC 2 cut(s) 334, 566
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 321, 553
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BciT130I CCWGG 2 cut(s) 468, 519
BclI TGATCA 1 cut(s) 247
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 3 cut(s) 41, 101, 153
BfmI CTRYAG 1 cut(s) 583
BisI GCNGC 7 cut(s) 335, 353, 431, 434, 482, 485, 567
BlsI GCNGC 7 cut(s) 336, 354, 432, 435, 483, 486, 568
Bme1390I CCNGG 2 cut(s) 468, 519
Bme18I GGWCC 1 cut(s) 461
BmgBI CACGTC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 461
BmrFI CCNGG 2 cut(s) 468, 519
BmsI GCATC 2 cut(s) 179, 535
BpmI CTGGAG 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 372
BsaAI YACGTR 2 cut(s) 418, 505
BsaBI GATNNNNATC 2 cut(s) 249, 528
BsaJI CCNNGG 2 cut(s) 440, 491
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bse1I ACTGG 1 cut(s) 422
Bse8I GATNNNNATC 2 cut(s) 249, 528
BseBI CCWGG 2 cut(s) 468, 519
BseDI CCNNGG 2 cut(s) 440, 491
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 2 cut(s) 249, 528
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 2 cut(s) 321, 553
BsgI GTGCAG 1 cut(s) 636
Bsh1236I CGCG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 575
BspFNI CGCG 1 cut(s) 281
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 440, 491
BssMI GATC 1 cut(s) 247
BssNAI GTATAC 1 cut(s) 451
Bst1107I GTATAC 1 cut(s) 451
Bst2UI CCWGG 2 cut(s) 468, 519
BstAPI GCANNNNNTGC 1 cut(s) 334
BstBAI YACGTR 2 cut(s) 418, 505
BstC8I GCNNGC 2 cut(s) 46, 110
BstDEI CTNAG 2 cut(s) 267, 562
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 281
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 334, 427
BstNI CCWGG 2 cut(s) 468, 519
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 466, 517
BstSFI CTRYAG 1 cut(s) 583
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 321, 553
BstZ17I GTATAC 1 cut(s) 451
BtgZI GCGATG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 575
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 46, 110
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 4 cut(s) 104, 425, 476, 535
CviAII CATG 5 cut(s) 20, 199, 318, 454, 589
CviJI RGCY 7 cut(s) 36, 44, 156, 334, 411, 566, 632
CviKI_1 RGCY 7 cut(s) 36, 44, 156, 334, 411, 566, 632
CviQI GTAC 4 cut(s) 104, 425, 476, 535
DdeI CTNAG 2 cut(s) 267, 562
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EciI GGCGGA 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 466, 517
EcoT22I ATGCAT 3 cut(s) 6, 550, 556
FaeI CATG 5 cut(s) 23, 202, 321, 457, 592
FatI CATG 5 cut(s) 19, 198, 317, 453, 588
FauI CCCGC 1 cut(s) 274
FauNDI CATATG 1 cut(s) 550
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 2 cut(s) 450, 514
Fnu4HI GCNGC 7 cut(s) 335, 353, 431, 434, 482, 485, 567
Fsp4HI GCNGC 7 cut(s) 335, 353, 431, 434, 482, 485, 567
FspBI CTAG 3 cut(s) 41, 101, 153
GluI GCNGC 7 cut(s) 335, 353, 431, 434, 482, 485, 567
GsuI CTGGAG 1 cut(s) 540
HapII CCGG 1 cut(s) 157
Hin1II CATG 5 cut(s) 23, 202, 321, 457, 592
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 373, 642
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 6 cut(s) 277, 313, 323, 451, 464, 515
Hpy188I TCNGA 4 cut(s) 244, 441, 492, 647
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 6 cut(s) 277, 313, 323, 451, 464, 515
HpyCH4IV ACGT 4 cut(s) 299, 417, 504, 574
HpyCH4V TGCA 6 cut(s) 4, 23, 396, 548, 554, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 334, 427
HpyF3I CTNAG 2 cut(s) 267, 562
HpySE526I ACGT 4 cut(s) 299, 417, 504, 574
Hsp92II CATG 5 cut(s) 23, 202, 321, 457, 592
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 2 cut(s) 117, 574
LpnPI CCDG 9 cut(s) 30, 170, 435, 444, 453, 480, 495, 504, 531
Lsp1109I GCAGC 2 cut(s) 321, 553
LweI GCATC 2 cut(s) 179, 535
MaeI CTAG 3 cut(s) 41, 101, 153
MaeII ACGT 4 cut(s) 299, 417, 504, 574
MaeIII GTNAC 2 cut(s) 226, 505
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 2 cut(s) 24, 62
MlyI GAGTC 2 cut(s) 367, 636
MmeI TCCRAC 2 cut(s) 117, 401
MnlI CCTC 7 cut(s) 126, 348, 357, 435, 447, 486, 498
Mph1103I ATGCAT 3 cut(s) 6, 550, 556
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 334, 566
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 468, 519
MvaI CCWGG 2 cut(s) 468, 519
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 334, 427
NdeI CATATG 1 cut(s) 550
NdeII GATC 1 cut(s) 247
NlaIII CATG 5 cut(s) 23, 202, 321, 457, 592
NmuCI GTSAC 2 cut(s) 226, 505
NsiI ATGCAT 3 cut(s) 6, 550, 556
NspI RCATGY 1 cut(s) 23
PkrI GCNGC 7 cut(s) 336, 354, 432, 435, 483, 486, 568
PleI GAGTC 2 cut(s) 367, 636
PpsI GAGTC 2 cut(s) 367, 636
Ppu21I YACGTR 2 cut(s) 418, 505
Psp6I CCWGG 2 cut(s) 466, 517
PspGI CCWGG 2 cut(s) 466, 517
PspPI GGNCC 1 cut(s) 461
PvuII CAGCTG 2 cut(s) 334, 566
RsaI GTAC 4 cut(s) 105, 426, 477, 536
RsaNI GTAC 4 cut(s) 104, 425, 476, 535
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 7 cut(s) 335, 353, 431, 434, 482, 485, 567
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 2 cut(s) 367, 636
ScrFI CCNGG 2 cut(s) 468, 519
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 2 cut(s) 179, 535
SfcI CTRYAG 1 cut(s) 583
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 2 cut(s) 24, 62
SspI AATATT 1 cut(s) 627
SspMI CTAG 3 cut(s) 41, 101, 153
StyD4I CCNGG 2 cut(s) 466, 517
TaiI ACGT 4 cut(s) 302, 420, 507, 577
TaqI TCGA 1 cut(s) 53
TasI AATT 2 cut(s) 24, 62
TatI WGTACW 1 cut(s) 475
TauI GCSGC 5 cut(s) 355, 433, 436, 484, 487
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 2 cut(s) 226, 505
TseI GCWGC 2 cut(s) 334, 566
Tsp45I GTSAC 2 cut(s) 226, 505
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 1 cut(s) 62
XceI RCATGY 1 cut(s) 23
XmiI GTMKAC 2 cut(s) 450, 514
XspI CTAG 3 cut(s) 41, 101, 153
Zsp2I ATGCAT 3 cut(s) 6, 550, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.