Rh3AG310600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016742
Physical Location & Seq
Reverse (-)
39073790 .. 39074976
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG310600.1

Sequence Viewer

Length: 525 bp
ATGGCATTGCCTCCACGAAGTTGGAAGTGCTCTCCCCCACTTGCAGTTATCATGCTGCTGATCATTTTGTCCATTTCAGTTCCAGGGAATTCAGCCGCAGTCACTGTCACTTCCGATGAAAAGAACCAACAACAAACAGTGACAGTTTCGTCCACTCAGAAAGAAGAAACCGACACTTCTACTACTACTGGAGAAATCAAGTGTGGAACATGCCCTTGTGTAAACCCTTGTCAACAGCAGCAGCAGCAGCAGATTCCACCACCTCCCCCACCGCCTCCGCCACCAAAGACCACTAGTTGCAGCCCAGTTTTACCTGCAGCCCCAGTATTATTGGCGCCGCCGCCTCCAAGGTTCATTTATGTGACGGGTATTCCAGGTGATTTGTACAAAACAGATACTTATGGATCGTCCTATTCCTATGATTTTTACTCGGCCGCTGCTCCACCGCCATATCCAAATGTGATCACGTTGCCACCTGCCTTGCTCCTCGTCTTGCTCATGGCTTTTGGGAGGATGCTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.55

Weight (kDa)

6.12

Isoelectric Point (pI)

60.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016742)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29110
malus_domestica MD17G1256500.v1.1
prunus_persica Prupe.3G159100_v2.0.a1
pyrus_communis pycom17g25870
rosa_chinensis RchiOBHm_Chr3g0493521
rosa_laevigata RLG00000022709
rosa_multiflora Rmu_sc0002343.1_g000062
rosa_roxburghii Rroxscaffold_6G00391520
rosa_rugosa Rorug03G0261700
rosa_samantha Rh3AG310600 Rh3BG346800 Rh3CG344600 Rh3DG345900
rosa_wichuraiana Rw3G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 484
AasI GACNNNNNNGTC 1 cut(s) 148
Acc36I ACCTGC 2 cut(s) 322, 484
AccB1I GGYRCC 1 cut(s) 334
AciI CCGC 7 cut(s) 96, 272, 278, 338, 341, 435, 446
AclWI GGATC 1 cut(s) 412
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 335
AfaI GTAC 1 cut(s) 386
AhlI ACTAGT 1 cut(s) 293
AjnI CCWGG 2 cut(s) 82, 373
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 1 cut(s) 412
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 8 cut(s) 55, 238, 241, 244, 247, 300, 317, 437
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 389
BanI GGYRCC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 8 cut(s) 42, 250, 253, 256, 259, 312, 329, 424
BciT130I CCWGG 2 cut(s) 84, 375
BclI TGATCA 2 cut(s) 60, 462
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 338
BfuAI ACCTGC 2 cut(s) 322, 484
Bme1390I CCNGG 2 cut(s) 84, 375
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 84, 375
BmrI ACTGGG 2 cut(s) 299, 317
BmsI GCATC 1 cut(s) 504
BmuI ACTGGG 2 cut(s) 299, 317
BpmI CTGGAG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 83, 347
Bse1I ACTGG 3 cut(s) 193, 305, 323
Bse3DI GCAATG 1 cut(s) 5
BseBI CCWGG 2 cut(s) 84, 375
BseDI CCNNGG 2 cut(s) 83, 347
BseGI GGATG 1 cut(s) 519
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 3 cut(s) 193, 305, 323
BseRI GAGGAG 1 cut(s) 476
BseX3I CGGCCG 1 cut(s) 432
BseXI GCAGC 8 cut(s) 42, 250, 253, 256, 259, 312, 329, 424
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 1 cut(s) 434
BshNI GGYRCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 32
BsnI GGCC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 3 cut(s) 60, 404, 462
BspACI CCGC 7 cut(s) 96, 272, 278, 338, 341, 435, 446
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 319
BspMI ACCTGC 2 cut(s) 322, 484
BspPI GGATC 1 cut(s) 412
BspT107I GGYRCC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 3 cut(s) 193, 305, 323
BssECI CCNNGG 2 cut(s) 83, 347
BssMI GATC 3 cut(s) 60, 404, 462
BssNI GRCGYC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 84, 375
Bst4CI ACNGT 3 cut(s) 106, 139, 145
BstACI GRCGYC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 519
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 3 cut(s) 63, 407, 465
BstMBI GATC 3 cut(s) 60, 404, 462
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 244, 247
BstNI CCWGG 2 cut(s) 84, 375
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 82, 373
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 8 cut(s) 42, 250, 253, 256, 259, 312, 329, 424
BstXI CCANNNNNNTGG 1 cut(s) 21
BstZI CGGCCG 1 cut(s) 432
BsuRI GGCC 1 cut(s) 434
BtsCI GGATG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 102, 144
BveI ACCTGC 2 cut(s) 322, 484
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 385
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 3 cut(s) 52, 210, 499
CviJI RGCY 5 cut(s) 95, 303, 320, 434, 503
CviKI_1 RGCY 5 cut(s) 95, 303, 320, 434, 503
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 1 cut(s) 156
DinI GGCGCC 1 cut(s) 336
DpnI GATC 3 cut(s) 62, 406, 464
DpnII GATC 3 cut(s) 60, 404, 462
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 432
EagI CGGCCG 1 cut(s) 432
EciI GGCGGA 1 cut(s) 267
EclXI CGGCCG 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 347
Eco52I CGGCCG 1 cut(s) 432
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 82, 373
EcoT14I CCWWGG 1 cut(s) 347
EgeI GGCGCC 1 cut(s) 336
EheI GGCGCC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 3 cut(s) 55, 213, 502
FaiI YATR 7 cut(s) 53, 211, 360, 402, 420, 451, 500
FatI CATG 3 cut(s) 51, 209, 498
FbaI TGATCA 2 cut(s) 60, 462
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 1 cut(s) 434
HhaI GCGC 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 335
Hin1II CATG 3 cut(s) 55, 213, 502
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HinfI GANTC 1 cut(s) 253
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 3 cut(s) 153, 223, 233
Hpy188I TCNGA 2 cut(s) 115, 159
Hpy8I GTNNAC 3 cut(s) 153, 223, 233
HpyCH4III ACNGT 3 cut(s) 106, 139, 145
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 3 cut(s) 44, 300, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 247
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 467
Hsp92I GRCGYC 1 cut(s) 335
Hsp92II CATG 3 cut(s) 55, 213, 502
HspAI GCGC 1 cut(s) 335
KasI GGCGCC 1 cut(s) 334
Ksp22I TGATCA 2 cut(s) 60, 462
Kzo9I GATC 3 cut(s) 60, 404, 462
LmnI GCTCC 2 cut(s) 445, 489
LpnPI CCDG 9 cut(s) 69, 96, 174, 318, 327, 336, 360, 387, 489
Lsp1109I GCAGC 8 cut(s) 42, 250, 253, 256, 259, 312, 329, 424
LweI GCATC 1 cut(s) 504
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 4 cut(s) 100, 106, 139, 361
MalI GATC 3 cut(s) 62, 406, 464
MboI GATC 3 cut(s) 60, 404, 462
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 88
Mly113I GGCGCC 1 cut(s) 335
MnlI CCTC 6 cut(s) 21, 273, 285, 354, 497, 504
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 437
MspR9I CCNGG 2 cut(s) 84, 375
MvaI CCWGG 2 cut(s) 84, 375
MwoI GCNNNNNNNGC 2 cut(s) 244, 247
NarI GGCGCC 1 cut(s) 335
NdeII GATC 3 cut(s) 60, 404, 462
NlaIII CATG 3 cut(s) 55, 213, 502
NlaIV GGNNCC 1 cut(s) 336
NmeAIII GCCGAG 1 cut(s) 410
NmuCI GTSAC 4 cut(s) 100, 106, 139, 361
NspI RCATGY 1 cut(s) 213
PaqCI CACCTGC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 253
PluTI GGCGCC 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 82, 373
PspGI CCWGG 2 cut(s) 82, 373
PspN4I GGNNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 359
Sau3AI GATC 3 cut(s) 60, 404, 462
ScrFI CCNGG 2 cut(s) 84, 375
SduI GDGCHC 1 cut(s) 32
SetI ASST 6 cut(s) 265, 316, 353, 379, 470, 478
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 1 cut(s) 315
SfoI GGCGCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 359
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 1 cut(s) 88
SsiI CCGC 7 cut(s) 96, 272, 278, 338, 341, 435, 446
SspDI GGCGCC 1 cut(s) 334
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 82, 373
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 3 cut(s) 106, 139, 145
TaiI ACGT 1 cut(s) 470
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 384
TauI GCSGC 4 cut(s) 98, 340, 343, 437
TfiI GAWTC 1 cut(s) 253
TscAI CASTG 2 cut(s) 109, 144
TseFI GTSAC 4 cut(s) 100, 106, 139, 361
TseI GCWGC 8 cut(s) 55, 238, 241, 244, 247, 300, 317, 437
Tsp45I GTSAC 4 cut(s) 100, 106, 139, 361
TspDTI ATGAA 2 cut(s) 132, 343
TspRI CASTG 2 cut(s) 109, 144
XapI RAATTY 1 cut(s) 88
XceI RCATGY 1 cut(s) 213
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.