FvH4_1g29430

C-type lectin receptor-like tyrosine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
22457401 .. 22461398
3998 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29430.t3

Sequence Viewer

Length: 1740 bp
ATGACAAACCTGACCCACATACTTAGCCATGGCCACACCCATTTCATTTCTCGCTTTCTTCTGCTCTGGGTTTCCCTTCATTCGTACCCAAGGGTTTGTGAGATGGTTCTGATGGATCGAAAGCTGCAATTGGTTCTGCTTCTGGTTATTTGCCGTTCGTGTGTCTCAGATAAGGTTCCTTCTGATTTGGTGGATTCTGGAACTGAAGAAAGTAAAGAACCATGCCCCAAGGGTTGGATTCGTGGACCTAATAAGCGGAAATGCTTTGCTTATATTAGAAGCCCCAAATCATGGAATGAGTCAGAGACCCATTGTAAAAGTTCTAATGGACAGTTAGCCACACTTGCTACATCTCAAGAAATTACCTTTGCTCAAAACCTATGTGTTGAAACCATCAGTGGCTGTTGGATTGGAGGAAGAGGTGTCAACTCTACCTCTGGTCTTGGTTGGAGTTGGTCTGATAACAATTCATACTGGAATGTGTCTCTGTTTCCTGGGGAACCCCTTCAATCCGTATGCAGTAATATGTCATGTCACACCAATAGTTCTGTTGATGTCTGTGTATTGGTCACTAATGAATCTATATCACTCTTATTTGATACGTGCCACATGTCTCATGCTTTTATATGCATGGCTGATTTAGGAATCAGATGTTACCACATGCATTGCCACAGAGAATATCTCATCATCCTTGGAGTTGTAAGTGGGTTAATCCTCTTCACGACATTAGCTGTAGTGATATGGCTTCTTGCATACAAGCGGAGTAAGAAGCGCAGACGTTCCCGCAAACTGTCTAATCCAGCTGCTACTGCATTAGTCCCTCCATCATGGAAAGTGTTCATGAAAGAGGAACTTCGGTCTATTACAAAGAATTTTAGTGAAGGAAACCGTCTTTTGGGAGATGCCAAGACAGGTGGTACATATGCTGGGCTTCTATCTGATGGTTCAAGGGTAGCGGTGAAGAGATTGAAGAAGTCTAGTTTTCAAAGGAAAAAGGAATTTTATTCTGAAATTGGAAGGGTTGCGAAGCTTCATCATCCAAATTTGGTGTCAGTGAAAGGCTGCTGTTATGATCATGGTGACCGCTATATAGTTTATGAGTACATAGTTAATGGTCCTTTAGATAGATGGCTACACCACATACCAAGGGGTGGTCGAAGCTTAGATTGGGTGATGAGAATGAAAATTGCGACAACTCTTGCTCAAGGAATTGCGTTTCTACATGACAAGGTTAAGCCCCATGTTGTGCATCGGGATATCCGTGCTAGTAATGTACTTCTTGATGAAGATTTTGGAGCCCATCTGATGGGGGTTGGTCTATCAAAGTTTGTGCCATATGAAGTGATGCATGAGAGGACAGTGATAGCTGGTGGCACGTATGGATACCTGGCTCCAGAGTTTGTGTACAGAAATGAGCTTACAACAAAGAGTGACGTTTATAGTTTTGGCGTGCTACTGCTTGAAATTGTGAGCGGACGTAGGCCTGCCCAGGCTGTTGATTCAGTCGGTTGGCAGAGTATTTTCGAGTGGGCAACACCCCTTGTCCAAGCTCATCGATACCCAGATCTCCTGGATCCGCACATAACTGCTTTTTCGTCTGATATTCCAGAGGCCAGTGTGATTCAGAAGGTGGTGGACCTTGTTTATGCTTGTACACAGCATGTGCCATCAATGCGCCCCAGAATGTCTCATGTTGTTCATCAACTTCAACAATTAGCCCAGACACCCATTCTAAAGTAG

Protein Analysis

580

Amino Acids

65.18

Weight (kDa)

9.08

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_C PF00059 95 - 211 2.3e-10 Lectin C-type domain
Pkinase PF00069 296 - 383 1.4e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 297 - 404 4.2e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 234, 291, 1151, 1306
AccBSI CCGCTC 1 cut(s) 1473
AciI CCGC 7 cut(s) 256, 760, 784, 956, 1084, 1473, 1577
AclWI GGATC 3 cut(s) 123, 1568, 1581
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 3 cut(s) 871, 998, 1042
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 6 cut(s) 86, 919, 1103, 1275, 1406, 1654
AfiI CCNNNNNNNGG 5 cut(s) 234, 291, 895, 1151, 1306
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 7 cut(s) 389, 509, 948, 970, 986, 1463, 1709
AjnI CCWGG 4 cut(s) 493, 1386, 1488, 1569
AjuI GAANNNNNNNTTGG 2 cut(s) 1150, 1182
AluBI AGCT 8 cut(s) 124, 731, 803, 1030, 1161, 1367, 1417, 1550
AluI AGCT 8 cut(s) 124, 731, 803, 1030, 1161, 1367, 1417, 1550
Alw26I GTCTC 5 cut(s) 169, 299, 489, 618, 1692
AlwI GGATC 3 cut(s) 123, 1568, 1581
AlwNI CAGNNNCTG 1 cut(s) 402
AoxI GGCC 3 cut(s) 31, 1481, 1611
ApeKI GCWGC 3 cut(s) 124, 803, 1062
ApoI RAATTY 3 cut(s) 871, 998, 1042
ArsI GACNNNNNNTTYG 2 cut(s) 1034, 1066
Asp700I GAANNNNTTC 2 cut(s) 504, 836
AspLEI GCGC 2 cut(s) 774, 1677
AspS9I GGNCC 3 cut(s) 245, 1115, 1636
AsuHPI GGTGA 3 cut(s) 970, 1091, 1183
AvaII GGWCC 3 cut(s) 245, 1115, 1636
BalI TGGCCA 1 cut(s) 33
BamHI GGATCC 1 cut(s) 1573
BanII GRGCYC 1 cut(s) 1300
BbvI GCAGC 3 cut(s) 111, 790, 1049
BccI CCATC 9 cut(s) 97, 106, 401, 832, 935, 1122, 1300, 1308, 1675
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 4 cut(s) 495, 1388, 1490, 1571
BciVI GTATCC 1 cut(s) 1376
BclI TGATCA 1 cut(s) 1072
BcoDI GTCTC 5 cut(s) 169, 299, 489, 618, 1692
BfaI CTAG 2 cut(s) 978, 1266
BfmI CTRYAG 1 cut(s) 732
BfuI GTATCC 1 cut(s) 1376
BglII AGATCT 1 cut(s) 1564
BisI GCNGC 3 cut(s) 125, 804, 1063
BlsI GCNGC 3 cut(s) 126, 805, 1064
Bme1390I CCNGG 4 cut(s) 495, 1388, 1490, 1571
Bme18I GGWCC 3 cut(s) 245, 1115, 1636
BmgT120I GGNCC 3 cut(s) 245, 1115, 1636
BmiI GGNNCC 5 cut(s) 177, 501, 1297, 1392, 1575
BmrFI CCNGG 4 cut(s) 495, 1388, 1490, 1571
BmsI GCATC 3 cut(s) 892, 1258, 1335
BplI GAGNNNNNCTC 2 cut(s) 666, 698
BpmI CTGGAG 1 cut(s) 1377
BpuEI CTTGAG 2 cut(s) 339, 1188
Bsa29I ATCGAT 1 cut(s) 1555
BsaAI YACGTR 2 cut(s) 603, 1377
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 7 cut(s) 28, 89, 228, 494, 691, 1145, 1488
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 291, 895, 1151, 1306
Bse1I ACTGG 2 cut(s) 479, 1614
Bse3DI GCAATG 1 cut(s) 664
BseBI CCWGG 4 cut(s) 495, 1388, 1490, 1571
BseCI ATCGAT 1 cut(s) 1555
BseDI CCNNGG 7 cut(s) 28, 89, 228, 494, 691, 1145, 1488
BseGI GGATG 2 cut(s) 687, 1036
BseLI CCNNNNNNNGG 5 cut(s) 234, 291, 895, 1151, 1306
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 479, 1614
BseXI GCAGC 3 cut(s) 111, 790, 1049
BseYI CCCAGC 1 cut(s) 926
BshFI GGCC 3 cut(s) 33, 1483, 1613
BshVI ATCGAT 1 cut(s) 1555
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 5 cut(s) 234, 291, 895, 1151, 1306
BsmAI GTCTC 5 cut(s) 169, 299, 489, 618, 1692
BsmFI GGGAC 1 cut(s) 803
BsnI GGCC 3 cut(s) 33, 1483, 1613
Bso31I GGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 1300
Bsp1407I TGTACA 2 cut(s) 1404, 1652
Bsp143I GATC 4 cut(s) 115, 1072, 1564, 1573
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 7 cut(s) 256, 760, 784, 956, 1084, 1473, 1577
BspANI GGCC 3 cut(s) 33, 1483, 1613
BspCNI CTCAG 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 1555
BspHI TCATGA 1 cut(s) 840
BspLI GGNNCC 5 cut(s) 177, 501, 1297, 1392, 1575
BspPI GGATC 3 cut(s) 123, 1568, 1581
BspTNI GGTCTC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 1473
BsrDI GCAATG 1 cut(s) 664
BsrGI TGTACA 2 cut(s) 1404, 1652
BsrI ACTGG 2 cut(s) 479, 1614
BssECI CCNNGG 7 cut(s) 28, 89, 228, 494, 691, 1145, 1488
BssMI GATC 4 cut(s) 115, 1072, 1564, 1573
BssT1I CCWWGG 5 cut(s) 28, 89, 228, 691, 1145
Bst2UI CCWGG 4 cut(s) 495, 1388, 1490, 1571
Bst4CI ACNGT 4 cut(s) 333, 792, 890, 1360
Bst6I CTCTTC 3 cut(s) 412, 722, 956
BstAUI TGTACA 2 cut(s) 1404, 1652
BstBAI YACGTR 2 cut(s) 603, 1377
BstC8I GCNNGC 2 cut(s) 1451, 1485
BstDEI CTNAG 3 cut(s) 23, 166, 1162
BstDSI CCRYGG 1 cut(s) 28
BstEII GGTNACC 1 cut(s) 1079
BstF5I GGATG 2 cut(s) 687, 1036
BstHHI GCGC 2 cut(s) 774, 1677
BstKTI GATC 4 cut(s) 118, 1075, 1567, 1576
BstMAI GTCTC 5 cut(s) 169, 299, 489, 618, 1692
BstMBI GATC 4 cut(s) 115, 1072, 1564, 1573
BstMWI GCNNNNNNNGC 3 cut(s) 344, 809, 1672
BstNI CCWGG 4 cut(s) 495, 1388, 1490, 1571
BstNSI RCATGY 3 cut(s) 613, 664, 1664
BstPI GGTNACC 1 cut(s) 1079
BstSCI CCNGG 4 cut(s) 493, 1386, 1488, 1569
BstSFI CTRYAG 1 cut(s) 732
BstV1I GCAGC 3 cut(s) 111, 790, 1049
BstX2I RGATCY 2 cut(s) 1564, 1573
BstYI RGATCY 2 cut(s) 1564, 1573
Bsu15I ATCGAT 1 cut(s) 1555
BsuI GTATCC 1 cut(s) 1376
BsuRI GGCC 3 cut(s) 33, 1483, 1613
BsuTUI ATCGAT 1 cut(s) 1555
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 2 cut(s) 687, 1036
BtsIMutI CAGTG 4 cut(s) 403, 1059, 1365, 1621
Cac8I GCNNGC 2 cut(s) 1451, 1485
CaiI CAGNNNCTG 1 cut(s) 402
CciI TCATGA 1 cut(s) 840
CfoI GCGC 2 cut(s) 774, 1677
Cfr13I GGNCC 3 cut(s) 245, 1115, 1636
ClaI ATCGAT 1 cut(s) 1555
Csp6I GTAC 6 cut(s) 85, 918, 1102, 1274, 1405, 1653
CspCI CAANNNNNGTGG 4 cut(s) 647, 682, 895, 930
CviQI GTAC 6 cut(s) 85, 918, 1102, 1274, 1405, 1653
DdeI CTNAG 3 cut(s) 23, 166, 1162
DpnI GATC 4 cut(s) 117, 1074, 1566, 1575
DpnII GATC 4 cut(s) 115, 1072, 1564, 1573
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 3 cut(s) 412, 722, 956
EarI CTCTTC 3 cut(s) 412, 722, 956
Eco130I CCWWGG 5 cut(s) 28, 89, 228, 691, 1145
Eco147I AGGCCT 1 cut(s) 1483
Eco24I GRGCYC 1 cut(s) 1300
Eco31I GGTCTC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 1258
Eco47I GGWCC 3 cut(s) 245, 1115, 1636
Eco57I CTGAAG 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 1079
EcoO65I GGTNACC 1 cut(s) 1079
EcoRII CCWGG 4 cut(s) 493, 1386, 1488, 1569
EcoRV GATATC 1 cut(s) 1258
EcoT14I CCWWGG 5 cut(s) 28, 89, 228, 691, 1145
EcoT22I ATGCAT 3 cut(s) 632, 666, 1350
EcoT38I GRGCYC 1 cut(s) 1300
ErhI CCWWGG 5 cut(s) 28, 89, 228, 691, 1145
FalI AAGNNNNNCTT 2 cut(s) 837, 869
FaqI GGGAC 1 cut(s) 803
FauI CCCGC 1 cut(s) 791
FauNDI CATATG 2 cut(s) 922, 1336
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 3 cut(s) 125, 804, 1063
FokI GGATG 2 cut(s) 674, 1023
FriOI GRGCYC 1 cut(s) 1300
Fsp4HI GCNGC 3 cut(s) 125, 804, 1063
FspBI CTAG 2 cut(s) 978, 1266
GlaI GCGC 2 cut(s) 773, 1676
GluI GCNGC 3 cut(s) 125, 804, 1063
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 1377
HaeIII GGCC 3 cut(s) 33, 1483, 1613
HhaI GCGC 2 cut(s) 774, 1677
Hin6I GCGC 2 cut(s) 772, 1675
HinP1I GCGC 2 cut(s) 772, 1675
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 2 cut(s) 1028, 1159
HinfI GANTC 7 cut(s) 194, 238, 299, 578, 645, 1499, 1621
HphI GGTGA 3 cut(s) 970, 1091, 1183
Hpy166II GTNNAC 5 cut(s) 245, 427, 1405, 1636, 1655
Hpy188III TCNNGA 8 cut(s) 198, 356, 721, 841, 1253, 1280, 1394, 1607
Hpy8I GTNNAC 5 cut(s) 245, 427, 1405, 1636, 1655
HpyAV CCTTC 6 cut(s) 86, 189, 515, 875, 1011, 1621
HpyCH4III ACNGT 4 cut(s) 333, 792, 890, 1360
HpyCH4IV ACGT 5 cut(s) 602, 778, 1376, 1434, 1477
HpyCH4V TGCA 8 cut(s) 127, 519, 630, 664, 752, 812, 1249, 1348
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 809, 1672
HpyF3I CTNAG 3 cut(s) 23, 166, 1162
HpySE526I ACGT 5 cut(s) 602, 778, 1376, 1434, 1477
HspAI GCGC 2 cut(s) 772, 1675
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 4 cut(s) 115, 1072, 1564, 1573
LmnI GCTCC 2 cut(s) 1295, 1396
Lsp1109I GCAGC 3 cut(s) 111, 790, 1049
LweI GCATC 3 cut(s) 892, 1258, 1335
MaeI CTAG 2 cut(s) 978, 1266
MaeII ACGT 5 cut(s) 602, 778, 1376, 1434, 1477
MaeIII GTNAC 5 cut(s) 533, 568, 653, 1079, 1430
MalI GATC 4 cut(s) 117, 1074, 1566, 1575
MbiI CCGCTC 1 cut(s) 1473
MboI GATC 4 cut(s) 115, 1072, 1564, 1573
MboII GAAGA 7 cut(s) 50, 218, 429, 709, 973, 982, 1298
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 2 cut(s) 1564, 1573
MhlI GDGCHC 1 cut(s) 1300
MlsI TGGCCA 1 cut(s) 33
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 3 cut(s) 215, 386, 428
MnlI CCTC 8 cut(s) 407, 413, 445, 725, 831, 841, 1347, 1603
Mox20I TGGCCA 1 cut(s) 33
Mph1103I ATGCAT 3 cut(s) 632, 666, 1350
MroXI GAANNNNTTC 2 cut(s) 504, 836
MscI TGGCCA 1 cut(s) 33
MseI TTAA 3 cut(s) 710, 1110, 1233
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 803
MspR9I CCNGG 4 cut(s) 495, 1388, 1490, 1571
MunI CAATTG 1 cut(s) 128
MvaI CCWGG 4 cut(s) 495, 1388, 1490, 1571
MwoI GCNNNNNNNGC 3 cut(s) 344, 809, 1672
NcoI CCATGG 1 cut(s) 28
NdeI CATATG 2 cut(s) 922, 1336
NdeII GATC 4 cut(s) 115, 1072, 1564, 1573
NlaIV GGNNCC 5 cut(s) 177, 501, 1297, 1392, 1575
NmuCI GTSAC 4 cut(s) 533, 568, 1079, 1430
NsiI ATGCAT 3 cut(s) 632, 666, 1350
NspI RCATGY 3 cut(s) 613, 664, 1664
PagI TCATGA 1 cut(s) 840
PceI AGGCCT 1 cut(s) 1483
PciI ACATGT 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 1258
PdmI GAANNNNTTC 2 cut(s) 504, 836
PfeI GAWTC 6 cut(s) 194, 238, 578, 645, 1499, 1621
PflMI CCANNNNNTGG 4 cut(s) 234, 291, 1151, 1306
PfoI TCCNGGA 1 cut(s) 1569
PkrI GCNGC 3 cut(s) 126, 805, 1064
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 2 cut(s) 603, 1377
PscI ACATGT 1 cut(s) 609
Psp6I CCWGG 4 cut(s) 493, 1386, 1488, 1569
PspEI GGTNACC 1 cut(s) 1079
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 4 cut(s) 493, 1386, 1488, 1569
PspN4I GGNNCC 5 cut(s) 177, 501, 1297, 1392, 1575
PspPI GGNCC 3 cut(s) 245, 1115, 1636
PstNI CAGNNNCTG 1 cut(s) 402
PsuI RGATCY 2 cut(s) 1564, 1573
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 6 cut(s) 86, 919, 1103, 1275, 1406, 1654
RsaNI GTAC 6 cut(s) 85, 918, 1102, 1274, 1405, 1653
SaqAI TTAA 3 cut(s) 710, 1110, 1233
SatI GCNGC 3 cut(s) 125, 804, 1063
Sau3AI GATC 4 cut(s) 115, 1072, 1564, 1573
Sau96I GGNCC 3 cut(s) 245, 1115, 1636
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 4 cut(s) 495, 1388, 1490, 1571
SduI GDGCHC 1 cut(s) 1300
SfaNI GCATC 3 cut(s) 892, 1258, 1335
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 3 cut(s) 245, 1115, 1636
SmlI CTYRAG 2 cut(s) 354, 1203
SmoI CTYRAG 2 cut(s) 354, 1203
SseBI AGGCCT 1 cut(s) 1483
SsiI CCGC 7 cut(s) 256, 760, 784, 956, 1084, 1473, 1577
SspMI CTAG 2 cut(s) 978, 1266
StuI AGGCCT 1 cut(s) 1483
StyD4I CCNGG 4 cut(s) 493, 1386, 1488, 1569
StyI CCWWGG 5 cut(s) 28, 89, 228, 691, 1145
TaaI ACNGT 4 cut(s) 333, 792, 890, 1360
TaiI ACGT 5 cut(s) 605, 781, 1379, 1437, 1480
TaqI TCGA 4 cut(s) 118, 1156, 1524, 1555
TaqII GACCGA 1 cut(s) 846
TatI WGTACW 4 cut(s) 1101, 1273, 1404, 1652
TfiI GAWTC 6 cut(s) 194, 238, 578, 645, 1499, 1621
Tru1I TTAA 3 cut(s) 710, 1110, 1233
Tru9I TTAA 3 cut(s) 710, 1110, 1233
TscAI CASTG 4 cut(s) 403, 1059, 1365, 1621
TseFI GTSAC 4 cut(s) 533, 568, 1079, 1430
TseI GCWGC 3 cut(s) 124, 803, 1062
Tsp45I GTSAC 4 cut(s) 533, 568, 1079, 1430
TspGWI ACGGA 2 cut(s) 502, 1250
TspRI CASTG 4 cut(s) 403, 1059, 1365, 1621
Van91I CCANNNNNTGG 4 cut(s) 234, 291, 1151, 1306
VpaK11BI GGWCC 3 cut(s) 245, 1115, 1636
XapI RAATTY 3 cut(s) 871, 998, 1042
XceI RCATGY 3 cut(s) 613, 664, 1664
XmnI GAANNNNTTC 2 cut(s) 504, 836
XspI CTAG 2 cut(s) 978, 1266
Zsp2I ATGCAT 3 cut(s) 632, 666, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.