Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004119

Physical Location & Seq

Genomic Coordinates Forward (+)

27004348 .. 27005300

Gene Structure 953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0273300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGGCGCAACAAGAAGATTGAGTTGAGGAAGCAAGACGTGGATCTTACTGAGCTACCGGTTCTGAGACTTAAAGTTGGGGAGCTCACTACTACGCTACTCCGGCTTGAGACTATGGAGGAGCAGCGGAAGAGCCCAGAGTTAAAGCTCAGCAACTCCCAGACTCGGGTTGGTGAGCTGTCTGATCAGATTGAGGCTTTCATTGACAAGATAAAGGAGGCTGCTAGTGCCAGTGTTTCCAAGTGGATGAAGAAGGCGAGAGCGCAGGGATGCCCAAGCCGTAAGTCGCTTATAAATAGGGACAAAACGACCAGATATCCCCCTCCTCGCACTGACGATGAAGAGGAGTCTCCGCTTCGTCATCAAAGCTACGAAGTGAAGAGAGGTTACGAAGCGGAGAGAGGTTACAAAGCGGAGAGAGGTTATGGAGCTGAGAGAGATTACAGAGCGAAGAAAGGTGACGAAGCGGAGGGAGATTACGAAGCGGAGAGAGGTGACAAGGAGGTTACGAAGCGGAGGGAGGTAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_C Pkinase_Tyr

Protein Analysis

176

Amino Acids

20.43

Weight (kDa)

9.17

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52310 AT1G52310
fragaria_vesca	FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430
malus_domestica	MD12G1015200.v1.1 MD14G1013200.v1.1
prunus_persica	Prupe.7G025300_v2.0.a1 Prupe.7G025300_v2.0.a1
pyrus_communis	pycom12g01260 pycom14g01120
rosa_chinensis	RchiOBHm_Chr3g0495371
rosa_laevigata	RLG00000022627
rosa_multiflora	Rmu_sc0007953.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390540
rosa_rugosa	Rorug03G0273100 Rorug03G0273200 Rorug03G0273300 Rorug03G0273400 Rorug03G0273500
rosa_samantha	Rh3AG321000 Rh3BG356000 Rh3CG352900 Rh3DG355300
rosa_wichuraiana	Rw3G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AciI	CCGC	7 cut(s)	127, 353, 395, 413, 467, 485, 514
AclWI	GGATC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	165, 166
AgeI	ACCGGT	1 cut(s)	58
AjiI	CACGTC	1 cut(s)	40
AluBI	AGCT	6 cut(s)	55, 85, 148, 178, 369, 431
AluI	AGCT	6 cut(s)	55, 85, 148, 178, 369, 431
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	3 cut(s)	61, 104, 354
AlwI	GGATC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	124, 221
AsiGI	ACCGGT	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	9, 265
AsuHPI	GGTGA	3 cut(s)	185, 470, 506
AvaI	CYCGRG	1 cut(s)	165
BanII	GRGCYC	2 cut(s)	87, 137
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	136, 208
BceAI	ACGGC	1 cut(s)	264
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	61, 104, 354
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	2 cut(s)	125, 222
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	2 cut(s)	126, 223
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 166
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	252, 275
BseLI	CCNNNNNNNGG	2 cut(s)	165, 166
BseMII	CTCAG	4 cut(s)	42, 56, 163, 423
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	3 cut(s)	134, 315, 359
BseXI	GCAGC	2 cut(s)	136, 208
BshTI	ACCGGT	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	59, 103
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	165, 166
BsmAI	GTCTC	3 cut(s)	61, 104, 354
BsmFI	GGGAC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	87, 137
Bsp143I	GATC	2 cut(s)	43, 184
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	7 cut(s)	127, 353, 395, 413, 467, 485, 514
BspCNI	CTCAG	4 cut(s)	43, 57, 162, 424
BspPI	GGATC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	2 cut(s)	43, 184
Bst6I	CTCTTC	3 cut(s)	125, 336, 374
BstDEI	CTNAG	4 cut(s)	51, 65, 149, 432
BstF5I	GGATG	2 cut(s)	252, 275
BstHHI	GCGC	2 cut(s)	9, 265
BstKTI	GATC	2 cut(s)	46, 187
BstMAI	GTCTC	3 cut(s)	61, 104, 354
BstMBI	GATC	2 cut(s)	43, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 227
BstV1I	GCAGC	2 cut(s)	136, 208
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	252, 275
BtsIMutI	CAGTG	2 cut(s)	238, 330
CfoI	GCGC	2 cut(s)	9, 265
Cfr10I	RCCGGY	1 cut(s)	58
CspAI	ACCGGT	1 cut(s)	58
DdeI	CTNAG	4 cut(s)	51, 65, 149, 432
DpnI	GATC	2 cut(s)	45, 186
DpnII	GATC	2 cut(s)	43, 184
Eam1104I	CTCTTC	3 cut(s)	125, 336, 374
EarI	CTCTTC	3 cut(s)	125, 336, 374
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	87, 137
Eco32I	GATATC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	317
EcoT38I	GRGCYC	2 cut(s)	87, 137
FaiI	YATR	4 cut(s)	116, 293, 426, 529
FaqI	GGGAC	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	125, 222
FokI	GGATG	2 cut(s)	259, 282
FriOI	GRGCYC	2 cut(s)	87, 137
Fsp4HI	GCNGC	2 cut(s)	125, 222
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	2 cut(s)	8, 264
GluI	GCNGC	2 cut(s)	125, 222
HapII	CCGG	2 cut(s)	59, 103
HhaI	GCGC	2 cut(s)	9, 265
Hin6I	GCGC	2 cut(s)	7, 263
HinP1I	GCGC	2 cut(s)	7, 263
HinfI	GANTC	2 cut(s)	163, 347
HpaII	CCGG	2 cut(s)	59, 103
HphI	GGTGA	3 cut(s)	185, 470, 506
Hpy188I	TCNGA	3 cut(s)	66, 184, 189
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 227
HpyF3I	CTNAG	4 cut(s)	51, 65, 149, 432
HpySE526I	ACGT	1 cut(s)	39
HspAI	GCGC	2 cut(s)	7, 263
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	43, 184
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	3 cut(s)	82, 121, 428
LpnPI	CCDG	7 cut(s)	72, 116, 150, 173, 244, 251, 325
Lsp1109I	GCAGC	2 cut(s)	136, 208
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	6 cut(s)	386, 404, 458, 494, 505, 523
MalI	GATC	2 cut(s)	45, 186
MboI	GATC	2 cut(s)	43, 184
MboII	GAAGA	6 cut(s)	28, 142, 262, 353, 391, 463
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	87, 137
MlyI	GAGTC	2 cut(s)	157, 356
MseI	TTAA	2 cut(s)	72, 143
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	2 cut(s)	59, 103
MwoI	GCNNNNNNNGC	2 cut(s)	103, 227
NdeII	GATC	2 cut(s)	43, 184
NmuCI	GTSAC	2 cut(s)	458, 494
PciSI	GCTCTTC	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	126, 223
PleI	GAGTC	2 cut(s)	157, 355
PpsI	GAGTC	2 cut(s)	157, 355
PsiI	TTATAA	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	72, 143
SatI	GCNGC	2 cut(s)	125, 222
Sau3AI	GATC	2 cut(s)	43, 184
SchI	GAGTC	2 cut(s)	157, 356
SduI	GDGCHC	2 cut(s)	87, 137
SfaNI	GCATC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	7 cut(s)	127, 353, 395, 413, 467, 485, 514
SspMI	CTAG	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	87
TaiI	ACGT	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	72, 143
Tru9I	TTAA	2 cut(s)	72, 143
TscAI	CASTG	2 cut(s)	238, 337
TseFI	GTSAC	2 cut(s)	458, 494
TseI	GCWGC	2 cut(s)	124, 221
Tsp45I	GTSAC	2 cut(s)	458, 494
TspDTI	ATGAA	3 cut(s)	190, 263, 354
TspRI	CASTG	2 cut(s)	238, 337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.