Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004119

Physical Location & Seq

Genomic Coordinates Reverse (-)

1069748 .. 1071686

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTTTGATGGAAGGGAATCCGATTGCTCTGCAATTGGTTGCGCCTCTGATTGTTTGCTTTCTGCTGGGTGCATGCGATTCACATAGGGTGTATAAGGAGTCGATTCGCAGGCATTTGGTTGCTTCTGGAACTGAAGAAAGTAAAGAACCATGCCCTACTGGTTGGATACTTGGACCTAATAGGAGGAAGTGCTTTGGTTATATGAGAAGCCCCCAACCATGGAACGAGTCAGAAACCCATTGTAAAAGTCATAATGGCAACTTAGCAGCATTCAAAACATCTCAAGAACTTACGTTTGCTCAAAATCTGTGTGCTGAAACCAGTGGCTGCTGGGTTGGAGGAAGAGGTGTCAACTCTACCATTGGTCTTGGTTGGAAATGGTTTGATAATACTTCGTATTGGAATGGGTCTTTCTTTCCTGGGGAACCTCTTCAATCCATTTGCAGTAACATCTCTTGCCACACCAATAGATCTGTCGACGTATGCATATTGGTGACTAATCGATCCACATCTCTCTCGGCTGAAAGATGCAATACGTCTCATGCTTTTATATGCATGGTTGATTTAGGGAACAGATGTTACCACATGCATTGCCACAGAGAATATCTTATTATCCTTGGAGTAGTAAGTGGGTTGATTCTCTTCACAACATTAGCTGTAGTGATTTGGCTTCTTGCATACAAGCGGAGCAAGAAGCGCAGACGTTCCCGCAAACTATCTAATCTAGCAGAAACTGCATTAGTCCCTCCGTCATGGAAAGTCTTCATGAAAGAGGAACTAAGGTCAATTACAAAGAACTTTAGTGAAGGAAACCGTCTTCTGGGAGATGCCAAGACAGGAGGCACGTATAGTGGACTTCTTCCTGATGGCTCAAGGGTCGCTGTTAAGAGGTTGAAGAGATCTAGTTTTCAAAGGAAAAAGGAGTTCTACTCTGAAATTGGAAGGGTTGCAAGGCTTCACCACTCAAATTTGGTGGCTGTGAAAGGCTGCTGTTATGATCGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_C Pkinase_Tyr

Protein Analysis

337

Amino Acids

37.78

Weight (kDa)

9.5

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_C	PF00059	72 - 187	2.6e-10	Lectin C-type domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52310 AT1G52310
fragaria_vesca	FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430
malus_domestica	MD12G1015200.v1.1 MD14G1013200.v1.1
prunus_persica	Prupe.7G025300_v2.0.a1 Prupe.7G025300_v2.0.a1
pyrus_communis	pycom12g01260 pycom14g01120
rosa_chinensis	RchiOBHm_Chr3g0495371
rosa_laevigata	RLG00000022627
rosa_multiflora	Rmu_sc0007953.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390540
rosa_rugosa	Rorug03G0273100 Rorug03G0273200 Rorug03G0273300 Rorug03G0273400 Rorug03G0273500
rosa_samantha	Rh3AG321000 Rh3BG356000 Rh3CG352900 Rh3DG355300
rosa_wichuraiana	Rw3G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	2 cut(s)	688, 712
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	970
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	222, 823
AgsI	TTSAA	4 cut(s)	277, 437, 898, 914
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	1 cut(s)	659
AluI	AGCT	1 cut(s)	659
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	501
AlwNI	CAGNNNCTG	2 cut(s)	330, 737
ApeKI	GCWGC	3 cut(s)	269, 330, 990
ApoI	RAATTY	1 cut(s)	970
Asp700I	GAANNNNTTC	2 cut(s)	432, 764
AspLEI	GCGC	2 cut(s)	46, 702
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	508, 953
AvaII	GGWCC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	757, 812
BbvI	GCAGC	3 cut(s)	281, 317, 977
BccI	CCATC	3 cut(s)	4, 863, 999
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	423
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	2 cut(s)	728, 906
BfmI	CTRYAG	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	162
BglII	AGATCT	2 cut(s)	473, 902
BisI	GCNGC	3 cut(s)	270, 331, 991
BlsI	GCNGC	3 cut(s)	271, 332, 992
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	2 cut(s)	521, 820
BpiI	GAAGAC	2 cut(s)	757, 812
BplI	GAGNNNNNCTC	2 cut(s)	917, 949
BpuEI	CTTGAG	2 cut(s)	270, 859
Bsa29I	ATCGAT	2 cut(s)	505, 1003
BsaAI	YACGTR	1 cut(s)	849
BsaBI	GATNNNNATC	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	221, 422, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 823
Bse1I	ACTGG	2 cut(s)	166, 324
Bse3DI	GCAATG	1 cut(s)	592
Bse8I	GATNNNNATC	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	2 cut(s)	505, 1003
BseDI	CCNNGG	3 cut(s)	221, 422, 619
BseJI	GATNNNNATC	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	222, 823
BseMI	GCAATG	1 cut(s)	592
BseNI	ACTGG	2 cut(s)	166, 324
BseXI	GCAGC	3 cut(s)	281, 317, 977
BseYI	CCCAGC	2 cut(s)	67, 333
BshVI	ATCGAT	2 cut(s)	505, 1003
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	2 cut(s)	222, 823
BsmAI	GTCTC	1 cut(s)	546
BsmBI	CGTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	473, 506, 902, 1000
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	2 cut(s)	688, 712
BspDI	ATCGAT	2 cut(s)	505, 1003
BspHI	TCATGA	1 cut(s)	768
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	166, 324
BssECI	CCNNGG	3 cut(s)	221, 422, 619
BssMI	GATC	4 cut(s)	473, 506, 902, 1000
BssT1I	CCWWGG	2 cut(s)	221, 619
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	818
Bst6I	CTCTTC	4 cut(s)	340, 438, 650, 893
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	849
BstC8I	GCNNGC	2 cut(s)	76, 113
BstDEI	CTNAG	2 cut(s)	265, 782
BstDSI	CCRYGG	1 cut(s)	221
BstHHI	GCGC	2 cut(s)	46, 702
BstKTI	GATC	4 cut(s)	476, 509, 905, 1003
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	4 cut(s)	473, 506, 902, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	699, 737
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	2 cut(s)	78, 592
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	281, 317, 977
BstV2I	GAAGAC	2 cut(s)	757, 812
BstX2I	RGATCY	2 cut(s)	473, 902
BstYI	RGATCY	2 cut(s)	473, 902
Bsu15I	ATCGAT	2 cut(s)	505, 1003
BsuI	GTATCC	1 cut(s)	162
BsuTUI	ATCGAT	2 cut(s)	505, 1003
BtgI	CCRYGG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	76, 113
CaiI	CAGNNNCTG	2 cut(s)	330, 737
CciI	TCATGA	1 cut(s)	768
CfoI	GCGC	2 cut(s)	46, 702
Cfr13I	GGNCC	1 cut(s)	176
ClaI	ATCGAT	2 cut(s)	505, 1003
CspCI	CAANNNNNGTGG	4 cut(s)	575, 610, 957, 992
CviAII	CATG	8 cut(s)	75, 153, 222, 545, 559, 589, 756, 769
CviJI	RGCY	9 cut(s)	213, 330, 524, 659, 673, 873, 958, 980, 990
CviKI_1	RGCY	9 cut(s)	213, 330, 524, 659, 673, 873, 958, 980, 990
DdeI	CTNAG	2 cut(s)	265, 782
DpnI	GATC	4 cut(s)	475, 508, 904, 1002
DpnII	GATC	4 cut(s)	473, 506, 902, 1000
Eam1104I	CTCTTC	4 cut(s)	340, 438, 650, 893
EarI	CTCTTC	4 cut(s)	340, 438, 650, 893
Eco130I	CCWWGG	2 cut(s)	221, 619
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	221, 619
EcoT22I	ATGCAT	3 cut(s)	491, 560, 594
ErhI	CCWWGG	2 cut(s)	221, 619
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	8 cut(s)	78, 156, 225, 548, 562, 592, 759, 772
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	8 cut(s)	74, 152, 221, 544, 558, 588, 755, 768
FauI	CCCGC	1 cut(s)	719
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	270, 331, 991
Fsp4HI	GCNGC	3 cut(s)	270, 331, 991
FspBI	CTAG	2 cut(s)	728, 906
GlaI	GCGC	2 cut(s)	45, 701
GluI	GCNGC	3 cut(s)	270, 331, 991
GsaI	CCCAGC	2 cut(s)	71, 337
HhaI	GCGC	2 cut(s)	46, 702
Hin1II	CATG	8 cut(s)	78, 156, 225, 548, 562, 592, 759, 772
Hin6I	GCGC	2 cut(s)	44, 700
HinP1I	GCGC	2 cut(s)	44, 700
HincII	GTYRAC	2 cut(s)	355, 481
HindII	GTYRAC	2 cut(s)	355, 481
HinfI	GANTC	6 cut(s)	19, 80, 101, 106, 230, 640
HphI	GGTGA	2 cut(s)	508, 953
Hpy166II	GTNNAC	3 cut(s)	355, 481, 857
Hpy188I	TCNGA	4 cut(s)	24, 51, 235, 937
Hpy188III	TCNNGA	4 cut(s)	129, 287, 769, 866
Hpy8I	GTNNAC	3 cut(s)	355, 481, 857
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	3 cut(s)	8, 803, 939
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4IV	ACGT	5 cut(s)	296, 483, 539, 706, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	699, 737
HpyF3I	CTNAG	2 cut(s)	265, 782
HpySE526I	ACGT	5 cut(s)	296, 483, 539, 706, 848
Hsp92II	CATG	8 cut(s)	78, 156, 225, 548, 562, 592, 759, 772
HspAI	GCGC	2 cut(s)	44, 700
Kzo9I	GATC	4 cut(s)	473, 506, 902, 1000
LmnI	GCTCC	1 cut(s)	690
Lsp1109I	GCAGC	3 cut(s)	281, 317, 977
LweI	GCATC	2 cut(s)	521, 820
MaeI	CTAG	2 cut(s)	728, 906
MaeII	ACGT	5 cut(s)	296, 483, 539, 706, 848
MaeIII	GTNAC	3 cut(s)	449, 496, 581
MalI	GATC	4 cut(s)	475, 508, 904, 1002
MboI	GATC	4 cut(s)	473, 506, 902, 1000
MboII	GAAGA	8 cut(s)	149, 357, 425, 637, 757, 812, 854, 910
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	2 cut(s)	473, 902
MluCI	AATT	4 cut(s)	35, 789, 939, 970
MlyI	GAGTC	2 cut(s)	110, 239
MmeI	TCCRAC	3 cut(s)	146, 319, 356
MnlI	CCTC	9 cut(s)	57, 180, 335, 341, 441, 759, 769, 836, 885
Mph1103I	ATGCAT	3 cut(s)	491, 560, 594
MroXI	GAANNNNTTC	2 cut(s)	432, 764
MseI	TTAA	1 cut(s)	888
MslI	CAYNNNNRTG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	699, 737
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	473, 506, 902, 1000
NlaIII	CATG	8 cut(s)	78, 156, 225, 548, 562, 592, 759, 772
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	1 cut(s)	500
NmuCI	GTSAC	1 cut(s)	496
NsiI	ATGCAT	3 cut(s)	491, 560, 594
NspI	RCATGY	2 cut(s)	78, 592
PaeI	GCATGC	1 cut(s)	78
PagI	TCATGA	1 cut(s)	768
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	2 cut(s)	432, 764
PfeI	GAWTC	4 cut(s)	19, 80, 106, 640
PkrI	GCNGC	3 cut(s)	271, 332, 992
PleI	GAGTC	2 cut(s)	109, 238
PpsI	GAGTC	2 cut(s)	109, 238
Ppu21I	YACGTR	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	2 cut(s)	67, 333
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	566, 598
PstNI	CAGNNNCTG	2 cut(s)	330, 737
PsuI	RGATCY	2 cut(s)	473, 902
RseI	CAYNNNNRTG	1 cut(s)	494
SalI	GTCGAC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	888
SatI	GCNGC	3 cut(s)	270, 331, 991
Sau3AI	GATC	4 cut(s)	473, 506, 902, 1000
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	2 cut(s)	110, 239
ScrFI	CCNGG	1 cut(s)	423
SfaNI	GCATC	2 cut(s)	521, 820
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	285, 874
SmoI	CTYRAG	2 cut(s)	285, 874
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	4 cut(s)	35, 789, 939, 970
SsiI	CCGC	2 cut(s)	688, 712
SspMI	CTAG	2 cut(s)	728, 906
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	221, 619
TaaI	ACNGT	1 cut(s)	818
TaiI	ACGT	5 cut(s)	299, 486, 542, 709, 851
TaqI	TCGA	4 cut(s)	104, 480, 505, 1003
TasI	AATT	4 cut(s)	35, 789, 939, 970
TfiI	GAWTC	4 cut(s)	19, 80, 106, 640
Tru1I	TTAA	1 cut(s)	888
Tru9I	TTAA	1 cut(s)	888
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	3 cut(s)	269, 330, 990
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	757, 785
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	970
XceI	RCATGY	2 cut(s)	78, 592
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	2 cut(s)	432, 764
XspI	CTAG	2 cut(s)	728, 906
Zsp2I	ATGCAT	3 cut(s)	491, 560, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.