Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004119

Physical Location & Seq

Genomic Coordinates Reverse (-)

798259 .. 800404

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01120.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTTTGATGGAAGGGAATCTGATTGCTCTGCAATTGGTTGCGCCTCTGATTGTTTGGTTTTTGCTGGGTGCATGCGATTCACAAAGGGTGTATAACGAGCCGATTCGCAGGTATTTGGTTGCTTCTGGAACAGAAGAAAGTAAAGAACCATGCCCTGCTGGATGGATTCTTGGACCTAATAGGAGGAAGTGCTTTGGTTATATGAGAAGCCCCCAACCATGGAATGAGTCAGAAACCCATTGTAAAAGTTATAATGGCAACTTAGCAGCATTCAAAACATCTCAAGAACTTACGTTTGCTCAAAATATATGTGCTGAAACCAGTGGCTGCTGGGTTGGAGGCAGAGGTGTGAACTCTACCATTGGTCTTGGCTGGAATTGGTCTGATAATACTTCCTATTGGAATGGGTCTCTCTTTCATGTGGAACCCCTTCGGTCAATTTGCAGTAACATCTCTTGCCACACCAATAGGTTGGTCGATGTATGCATATTGGTGACTAATAGATCCATGTCTCTCTTGGCTGAAAGATGCAATACGTCTCATGCTTTTATATGCATGGTTGATTTAGGGAACAGATGTTACCACATGCATTGCCACAGAGAATATCTTATTATCCTTGGAGTAGTAAGTGGGTTGATTCTCTTCACAACATTAGCTGTAGTGATTTGGCTTCTTGCATACAAGCGTAGCAAGAAGCGCAGACGTTCCCGCAAACTATCTAATCCAGCAGAAACTGCATTAGTCGCTCCATCATGGAAAGTCTTCATGAAAGACGAACTAAGGTCAATTACAAAGAACTTTAGTGAAGGAAACCGTCTTCTGGGAGATGCCAAGACAGGAGGCACGTACAGTGGAATTCTTCCTGATGGCTCAAGAGTGGCTGTTAAGAGGTTGAAGAGATCTAGTTTTCAAAGGAAAAAAGAGTTCTACTCTGAAATTGGAAGGGTTGCAAGGCTTCACCACCCAAATTTGGTGGCTGTGAAAGGCTGCTGTTATGATCGATCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_C Pkinase_Tyr

Protein Analysis

338

Amino Acids

38.01

Weight (kDa)

9.49

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52310 AT1G52310
fragaria_vesca	FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430
malus_domestica	MD12G1015200.v1.1 MD14G1013200.v1.1
prunus_persica	Prupe.7G025300_v2.0.a1 Prupe.7G025300_v2.0.a1
pyrus_communis	pycom12g01260 pycom14g01120
rosa_chinensis	RchiOBHm_Chr3g0495371
rosa_laevigata	RLG00000022627
rosa_multiflora	Rmu_sc0007953.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390540
rosa_rugosa	Rorug03G0273100 Rorug03G0273200 Rorug03G0273300 Rorug03G0273400 Rorug03G0273500
rosa_samantha	Rh3AG321000 Rh3BG356000 Rh3CG352900 Rh3DG355300
rosa_wichuraiana	Rw3G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	102
AciI	CCGC	1 cut(s)	712
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	858, 970
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	3 cut(s)	222, 823, 973
AgsI	TTSAA	3 cut(s)	277, 898, 914
AluBI	AGCT	1 cut(s)	659
AluI	AGCT	1 cut(s)	659
Alw26I	GTCTC	3 cut(s)	417, 519, 546
AlwI	GGATC	1 cut(s)	501
AlwNI	CAGNNNCTG	2 cut(s)	330, 737
ApeKI	GCWGC	3 cut(s)	269, 330, 990
ApoI	RAATTY	2 cut(s)	858, 970
Asp700I	GAANNNNTTC	2 cut(s)	432, 764
AspLEI	GCGC	2 cut(s)	46, 702
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	508, 953
AvaII	GGWCC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	757, 812
BbvI	GCAGC	3 cut(s)	281, 317, 977
BccI	CCATC	4 cut(s)	4, 159, 760, 863
BcoDI	GTCTC	3 cut(s)	417, 519, 546
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	1 cut(s)	660
BfuAI	ACCTGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	902
BisI	GCNGC	3 cut(s)	270, 331, 991
BlsI	GCNGC	3 cut(s)	271, 332, 992
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	429
BmsI	GCATC	2 cut(s)	521, 820
BpiI	GAAGAC	2 cut(s)	757, 812
BplI	GAGNNNNNCTC	2 cut(s)	917, 949
BpuEI	CTTGAG	2 cut(s)	270, 859
Bsa29I	ATCGAT	1 cut(s)	1003
BsaAI	YACGTR	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	221, 619
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 823, 973
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	592
BseCI	ATCGAT	1 cut(s)	1003
BseDI	CCNNGG	2 cut(s)	221, 619
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	3 cut(s)	222, 823, 973
BseMI	GCAATG	1 cut(s)	592
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	281, 317, 977
BseYI	CCCAGC	2 cut(s)	67, 333
BshVI	ATCGAT	1 cut(s)	1003
BslI	CCNNNNNNNGG	3 cut(s)	222, 823, 973
BsmAI	GTCTC	3 cut(s)	417, 519, 546
BsmBI	CGTCTC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	506, 902, 1000, 1004
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	1 cut(s)	712
BspDI	ATCGAT	1 cut(s)	1003
BspHI	TCATGA	1 cut(s)	768
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	221, 619
BssMI	GATC	4 cut(s)	506, 902, 1000, 1004
BssT1I	CCWWGG	2 cut(s)	221, 619
Bst4CI	ACNGT	2 cut(s)	818, 854
Bst6I	CTCTTC	2 cut(s)	650, 893
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	849
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	265, 782
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	46, 702
BstKTI	GATC	4 cut(s)	509, 905, 1003, 1007
BstMAI	GTCTC	3 cut(s)	417, 519, 546
BstMBI	GATC	4 cut(s)	506, 902, 1000, 1004
BstMWI	GCNNNNNNNGC	3 cut(s)	699, 737, 746
BstNSI	RCATGY	2 cut(s)	78, 592
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	281, 317, 977
BstV2I	GAAGAC	2 cut(s)	757, 812
BstX2I	RGATCY	2 cut(s)	506, 902
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	2 cut(s)	506, 902
Bsu15I	ATCGAT	1 cut(s)	1003
BsuTUI	ATCGAT	1 cut(s)	1003
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	331, 859
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	76
CaiI	CAGNNNCTG	2 cut(s)	330, 737
CciI	TCATGA	1 cut(s)	768
CfoI	GCGC	2 cut(s)	46, 702
Cfr13I	GGNCC	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	1003
Csp6I	GTAC	1 cut(s)	850
CspCI	CAANNNNNGTGG	4 cut(s)	575, 610, 957, 992
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	2 cut(s)	265, 782
DpnI	GATC	4 cut(s)	508, 904, 1002, 1006
DpnII	GATC	4 cut(s)	506, 902, 1000, 1004
Eam1104I	CTCTTC	2 cut(s)	650, 893
EarI	CTCTTC	2 cut(s)	650, 893
Eco130I	CCWWGG	2 cut(s)	221, 619
Eco31I	GGTCTC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	858
EcoT14I	CCWWGG	2 cut(s)	221, 619
EcoT22I	ATGCAT	3 cut(s)	491, 560, 594
ErhI	CCWWGG	2 cut(s)	221, 619
Esp3I	CGTCTC	1 cut(s)	546
FauI	CCCGC	1 cut(s)	719
Fnu4HI	GCNGC	3 cut(s)	270, 331, 991
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	270, 331, 991
FspBI	CTAG	1 cut(s)	906
GlaI	GCGC	2 cut(s)	45, 701
GluI	GCNGC	3 cut(s)	270, 331, 991
GsaI	CCCAGC	2 cut(s)	71, 337
HhaI	GCGC	2 cut(s)	46, 702
Hin6I	GCGC	2 cut(s)	44, 700
HinP1I	GCGC	2 cut(s)	44, 700
HinfI	GANTC	6 cut(s)	19, 80, 106, 169, 230, 640
HphI	GGTGA	2 cut(s)	508, 953
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	5 cut(s)	24, 51, 235, 388, 937
Hpy188III	TCNNGA	5 cut(s)	129, 287, 769, 866, 876
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	4 cut(s)	8, 443, 803, 939
HpyCH4III	ACNGT	2 cut(s)	818, 854
HpyCH4IV	ACGT	4 cut(s)	296, 539, 706, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	699, 737, 746
HpyF3I	CTNAG	2 cut(s)	265, 782
HpySE526I	ACGT	4 cut(s)	296, 539, 706, 848
HspAI	GCGC	2 cut(s)	44, 700
Kzo9I	GATC	4 cut(s)	506, 902, 1000, 1004
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	3 cut(s)	281, 317, 977
LweI	GCATC	2 cut(s)	521, 820
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	4 cut(s)	296, 539, 706, 848
MaeIII	GTNAC	3 cut(s)	449, 496, 581
MalI	GATC	4 cut(s)	508, 904, 1002, 1006
MboI	GATC	4 cut(s)	506, 902, 1000, 1004
MboII	GAAGA	6 cut(s)	149, 637, 757, 812, 854, 910
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	2 cut(s)	506, 902
MluCI	AATT	7 cut(s)	35, 379, 441, 789, 858, 939, 970
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	6 cut(s)	57, 180, 335, 341, 836, 885
Mph1103I	ATGCAT	3 cut(s)	491, 560, 594
MroXI	GAANNNNTTC	2 cut(s)	432, 764
MseI	TTAA	1 cut(s)	888
MslI	CAYNNNNRTG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	699, 737, 746
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	506, 902, 1000, 1004
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	496
NsiI	ATGCAT	3 cut(s)	491, 560, 594
NspI	RCATGY	2 cut(s)	78, 592
PaeI	GCATGC	1 cut(s)	78
PagI	TCATGA	1 cut(s)	768
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	2 cut(s)	432, 764
PfeI	GAWTC	5 cut(s)	19, 80, 106, 169, 640
PkrI	GCNGC	3 cut(s)	271, 332, 992
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	255
PspFI	CCCAGC	2 cut(s)	67, 333
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	566, 598
PstNI	CAGNNNCTG	2 cut(s)	330, 737
PsuI	RGATCY	2 cut(s)	506, 902
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	888
SatI	GCNGC	3 cut(s)	270, 331, 991
Sau3AI	GATC	4 cut(s)	506, 902, 1000, 1004
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	239
SfaNI	GCATC	2 cut(s)	521, 820
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	285, 874
SmoI	CTYRAG	2 cut(s)	285, 874
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	7 cut(s)	35, 379, 441, 789, 858, 939, 970
SsiI	CCGC	1 cut(s)	712
SspMI	CTAG	1 cut(s)	906
StyI	CCWWGG	2 cut(s)	221, 619
TaaI	ACNGT	2 cut(s)	818, 854
TaiI	ACGT	4 cut(s)	299, 542, 709, 851
TaqI	TCGA	2 cut(s)	480, 1003
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	7 cut(s)	35, 379, 441, 789, 858, 939, 970
TfiI	GAWTC	5 cut(s)	19, 80, 106, 169, 640
Tru1I	TTAA	1 cut(s)	888
Tru9I	TTAA	1 cut(s)	888
TscAI	CASTG	2 cut(s)	331, 859
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	3 cut(s)	269, 330, 990
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	3 cut(s)	410, 757, 785
TspRI	CASTG	2 cut(s)	331, 859
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	2 cut(s)	858, 970
XceI	RCATGY	2 cut(s)	78, 592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmnI	GAANNNNTTC	2 cut(s)	432, 764
XspI	CTAG	1 cut(s)	906
Zsp2I	ATGCAT	3 cut(s)	491, 560, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.