RLG00000022627

C-type lectin receptor-like tyrosine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
5523927 .. 5527748
3822 bp
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UTR
Exon/CDS
Intron
RLM00000022627

Sequence Viewer

Length: 1629 bp
ATGGAAGGAAAGCTGCAATTGGTTTTGCTTCTGATTGTTTGCGGTTCGTGTGTTTCAGATAAGGTTCATACTGATTTGGTGGATTCTCGAACTGAAGAAAGTAAAGAACCATGCCCCAAGGGTTGGATTCTTGGCCCTAGTAAGCGGAAGTGCTTTGCTTATATTAGAAGCCCCAAATCATGGAACGAGTCAGAGACCCATTGTAAAAGTTATAATGGACAGCTAGCAGCACTCGCTGCATCTCAAGAACTGATCTTTGCTCAAAGCCTATGTGTTGAAACCATCAGTGGCTGTTGGGTTGGAGGAAGAGGTCTCAACTCTACCGCTGGTATTGGTTGGAGTTGGTCTGATAACAGTTCATACTGGAATGTATCTCTCTTTCCTGGAAAACCCCTTCAATCCGTTTGCAGTAATTTGTCTTGTCACACCAAAAGTTCTGTCGATGTTTGTGTATTGGTGACTAATGGATCTAAATCACTCTTGATTGAGAGGTGCCACATGTCTCATGCTTTTATATGCATGGCTGATTTGGGGAACAGATGTTTCCACATGCATTGCCACAGAGAATATCTCATCATCCTTGGAGTTGTAAGTGGGTTGATCCTCTTCACGACATTAGCTGTAGTGATTTGGCTTCTTGCATACAAGCGGAGCAAGAAGCGCAGACGTTCCCGCAAATTATCTAATCCAGCAGCTACTGCATTAGTCCCTCCATCGTGGAAAGTGTTCATGAAAGAGGAACTTCGGTCTATTACAAAGAATTTTAGTGAAGGAAACCGTCTCTTGGGAGATGCCAAGACGGGAGGTACATATGGTGGGCTTCTACCTGATGGTTCAAGGGTAGCGGTGAAGAGATTGAAGAAGTCTAGTTTTCAAAGGAAAAAGGAGTTTTATTCTGAAGTTGGAAGGGTTGCAAAGCTTCATCATCCAAATTTGGTGGCAGTGAAAGGCTGTTGTTATGATCATGGAGACCGTTACATTGTTTATGAGTTCATAGTTAATGGTCCCTTAGATAGATGGCTACACCACATACCAAGGGGTGGTCGAAGCTTAGATTGGGTGATGAGAATGAAAATTGCGACAACTCTTGCTCAAGGAATTGCGTTCCTGCATGACAAGGTTAAACCCCATGTTGTGCATCGTGATATCCGTGCTAGTAATGTACTTCTTGATGAAGATTTTGGAGCCCATCTGATGGGGGTTGGTCTCTCAAAGTTTGTGCCATATGAAGTGATGCATGAGAGGACAGTGATGGCTGGTGGCACATATGGATACCTGGCTCCAGAGTTTGTGTACAGAAATGAGCTTACAACAAAGAGTGACGTTTATAGTTTTGGTGTGCTACTGCTTGAAATTGTAAGTGGACGTAGGCCTGCACAGGCTGTTGATTCGGTCGGTTGGCAGAGTATTTTCGAGTGGGCAACACCTCTTGTGCAAGCTCATCGATACCCAGATCTCCTGGATCCGCACATAACTGCTTTTTCTTCTGATATTCCAGAGGGCAGTGTGATTCAGAAAGTGGTCGACCTTGTTTATGCTTGTACACAGCATGTGCCATCAATGCGCCCCAGAATGTCTCATGTTGTTCATCAACTTCAACAGTTAGCCCAGACTCCCATTCTAAAGTAG

Protein Analysis

543

Amino Acids

60.58

Weight (kDa)

9.23

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_C PF00059 58 - 174 3.6e-09 Lectin C-type domain
Pkinase PF00069 260 - 530 7.1e-35 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 262 - 532 1.4e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 492
AccB7I CCANNNNNTGG 4 cut(s) 123, 180, 1040, 1195
AccI GTMKAC 1 cut(s) 1524
AciI CCGC 7 cut(s) 42, 145, 324, 649, 673, 845, 1466
AclWI GGATC 4 cut(s) 475, 595, 1457, 1470
AcsI RAATTY 2 cut(s) 760, 931
AcuI CTGAAG 2 cut(s) 114, 918
AfaI GTAC 4 cut(s) 808, 1164, 1295, 1543
AfiI CCNNNNNNNGG 5 cut(s) 123, 180, 784, 1040, 1195
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 7 cut(s) 278, 398, 837, 859, 875, 1352, 1598
AjnI CCWGG 3 cut(s) 382, 1275, 1458
AjuI GAANNNNNNNTTGG 2 cut(s) 1039, 1071
AluBI AGCT 8 cut(s) 13, 223, 620, 695, 919, 1050, 1306, 1439
AluI AGCT 8 cut(s) 13, 223, 620, 695, 919, 1050, 1306, 1439
Alw26I GTCTC 7 cut(s) 188, 317, 507, 785, 963, 1211, 1581
AlwI GGATC 4 cut(s) 475, 595, 1457, 1470
AlwNI CAGNNNCTG 2 cut(s) 291, 698
AoxI GGCC 2 cut(s) 133, 1370
ApeKI GCWGC 4 cut(s) 13, 227, 236, 692
ApoI RAATTY 2 cut(s) 760, 931
ArsI GACNNNNNNTTYG 2 cut(s) 423, 455
Asp700I GAANNNNTTC 1 cut(s) 725
AspLEI GCGC 2 cut(s) 663, 1566
AspS9I GGNCC 2 cut(s) 134, 1004
AsuHPI GGTGA 3 cut(s) 469, 859, 1072
AsuNHI GCTAGC 1 cut(s) 223
AvaII GGWCC 1 cut(s) 1004
BamHI GGATCC 1 cut(s) 1462
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 1189
BbvI GCAGC 3 cut(s) 223, 239, 704
BccI CCATC 8 cut(s) 290, 721, 824, 1011, 1189, 1197, 1246, 1564
BcgI CGANNNNNNTGC 2 cut(s) 1424, 1458
BciT130I CCWGG 3 cut(s) 384, 1277, 1460
BciVI GTATCC 1 cut(s) 1265
BclI TGATCA 1 cut(s) 961
BcoDI GTCTC 7 cut(s) 188, 317, 507, 785, 963, 1211, 1581
BfaI CTAG 4 cut(s) 138, 224, 867, 1155
BfmI CTRYAG 1 cut(s) 621
BfuI GTATCC 1 cut(s) 1265
BglII AGATCT 1 cut(s) 1453
BisI GCNGC 4 cut(s) 14, 228, 237, 693
BlsI GCNGC 4 cut(s) 15, 229, 238, 694
Bme1390I CCNGG 3 cut(s) 384, 1277, 1460
Bme18I GGWCC 1 cut(s) 1004
BmgT120I GGNCC 2 cut(s) 134, 1004
BmiI GGNNCC 5 cut(s) 494, 1006, 1186, 1281, 1464
BmrFI CCNGG 3 cut(s) 384, 1277, 1460
BmsI GCATC 4 cut(s) 248, 781, 1147, 1224
BmtI GCTAGC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 555, 587
BpmI CTGGAG 1 cut(s) 1266
BpuEI CTTGAG 2 cut(s) 228, 1077
Bsa29I ATCGAT 1 cut(s) 1444
BsaBI GATNNNNATC 1 cut(s) 472
BsaI GGTCTC 4 cut(s) 188, 317, 963, 1211
BsaJI CCNNGG 3 cut(s) 117, 580, 1034
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 180, 784, 1040, 1195
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 472
BseBI CCWGG 3 cut(s) 384, 1277, 1460
BseCI ATCGAT 1 cut(s) 1444
BseDI CCNNGG 3 cut(s) 117, 580, 1034
BseGI GGATG 2 cut(s) 576, 925
BseJI GATNNNNATC 1 cut(s) 472
BseLI CCNNNNNNNGG 5 cut(s) 123, 180, 784, 1040, 1195
BseMI GCAATG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 368
BseXI GCAGC 3 cut(s) 223, 239, 704
BsgI GTGCAG 1 cut(s) 1359
Bsh1285I CGRYCG 1 cut(s) 1395
BshFI GGCC 2 cut(s) 135, 1372
BshNI GGYRCC 1 cut(s) 492
BshVI ATCGAT 1 cut(s) 1444
BsiEI CGRYCG 1 cut(s) 1395
BslFI GGGAC 2 cut(s) 692, 990
BslI CCNNNNNNNGG 5 cut(s) 123, 180, 784, 1040, 1195
BsmAI GTCTC 7 cut(s) 188, 317, 507, 785, 963, 1211, 1581
BsmBI CGTCTC 1 cut(s) 785
BsmFI GGGAC 2 cut(s) 692, 990
BsnI GGCC 2 cut(s) 135, 1372
Bso31I GGTCTC 4 cut(s) 188, 317, 963, 1211
Bsp1286I GDGCHC 1 cut(s) 1189
Bsp1407I TGTACA 2 cut(s) 1293, 1541
Bsp143I GATC 6 cut(s) 252, 467, 600, 961, 1453, 1462
BspACI CCGC 7 cut(s) 42, 145, 324, 649, 673, 845, 1466
BspANI GGCC 2 cut(s) 135, 1372
BspDI ATCGAT 1 cut(s) 1444
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 5 cut(s) 494, 1006, 1186, 1281, 1464
BspOI GCTAGC 1 cut(s) 227
BspPI GGATC 4 cut(s) 475, 595, 1457, 1470
BspT107I GGYRCC 1 cut(s) 492
BspTNI GGTCTC 4 cut(s) 188, 317, 963, 1211
BsrDI GCAATG 1 cut(s) 553
BsrGI TGTACA 2 cut(s) 1293, 1541
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 117, 580, 1034
BssMI GATC 6 cut(s) 252, 467, 600, 961, 1453, 1462
BssT1I CCWWGG 3 cut(s) 117, 580, 1034
Bst2UI CCWGG 3 cut(s) 384, 1277, 1460
Bst4CI ACNGT 5 cut(s) 356, 779, 974, 1249, 1602
Bst6I CTCTTC 3 cut(s) 301, 611, 845
BstAPI GCANNNNNTGC 2 cut(s) 236, 698
BstAUI TGTACA 2 cut(s) 1293, 1541
BstC8I GCNNGC 3 cut(s) 225, 1374, 1437
BstDEI CTNAG 2 cut(s) 1009, 1051
BstF5I GGATG 2 cut(s) 576, 925
BstHHI GCGC 2 cut(s) 663, 1566
BstKTI GATC 6 cut(s) 255, 470, 603, 964, 1456, 1465
BstMAI GTCTC 7 cut(s) 188, 317, 507, 785, 963, 1211, 1581
BstMBI GATC 6 cut(s) 252, 467, 600, 961, 1453, 1462
BstMCI CGRYCG 1 cut(s) 1395
BstMWI GCNNNNNNNGC 5 cut(s) 233, 236, 660, 698, 1561
BstNI CCWGG 3 cut(s) 384, 1277, 1460
BstNSI RCATGY 3 cut(s) 502, 553, 1553
BstSCI CCNGG 3 cut(s) 382, 1275, 1458
BstSFI CTRYAG 1 cut(s) 621
BstV1I GCAGC 3 cut(s) 223, 239, 704
BstX2I RGATCY 3 cut(s) 467, 1453, 1462
BstYI RGATCY 3 cut(s) 467, 1453, 1462
Bsu15I ATCGAT 1 cut(s) 1444
BsuI GTATCC 1 cut(s) 1265
BsuRI GGCC 2 cut(s) 135, 1372
BsuTUI ATCGAT 1 cut(s) 1444
BtsCI GGATG 2 cut(s) 576, 925
BtsI GCAGTG 2 cut(s) 948, 1510
BtsIMutI CAGTG 4 cut(s) 292, 948, 1254, 1510
Cac8I GCNNGC 3 cut(s) 225, 1374, 1437
CaiI CAGNNNCTG 2 cut(s) 291, 698
CciI TCATGA 1 cut(s) 729
CfoI GCGC 2 cut(s) 663, 1566
Cfr13I GGNCC 2 cut(s) 134, 1004
ClaI ATCGAT 1 cut(s) 1444
Csp6I GTAC 4 cut(s) 807, 1163, 1294, 1542
CspCI CAANNNNNGTGG 4 cut(s) 536, 571, 918, 953
CviQI GTAC 4 cut(s) 807, 1163, 1294, 1542
DdeI CTNAG 2 cut(s) 1009, 1051
DpnI GATC 6 cut(s) 254, 469, 602, 963, 1455, 1464
DpnII GATC 6 cut(s) 252, 467, 600, 961, 1453, 1462
Eam1104I CTCTTC 3 cut(s) 301, 611, 845
EarI CTCTTC 3 cut(s) 301, 611, 845
Eco130I CCWWGG 3 cut(s) 117, 580, 1034
Eco147I AGGCCT 1 cut(s) 1372
Eco24I GRGCYC 1 cut(s) 1189
Eco31I GGTCTC 4 cut(s) 188, 317, 963, 1211
Eco32I GATATC 1 cut(s) 1147
Eco47I GGWCC 1 cut(s) 1004
Eco57I CTGAAG 2 cut(s) 114, 918
EcoRII CCWGG 3 cut(s) 382, 1275, 1458
EcoRV GATATC 1 cut(s) 1147
EcoT14I CCWWGG 3 cut(s) 117, 580, 1034
EcoT22I ATGCAT 3 cut(s) 521, 555, 1239
EcoT38I GRGCYC 1 cut(s) 1189
ErhI CCWWGG 3 cut(s) 117, 580, 1034
Esp3I CGTCTC 1 cut(s) 785
FalI AAGNNNNNCTT 2 cut(s) 726, 758
FaqI GGGAC 2 cut(s) 692, 990
FauI CCCGC 1 cut(s) 680
FauNDI CATATG 3 cut(s) 811, 1225, 1267
FbaI TGATCA 1 cut(s) 961
FblI GTMKAC 1 cut(s) 1524
Fnu4HI GCNGC 4 cut(s) 14, 228, 237, 693
FokI GGATG 2 cut(s) 563, 912
FriOI GRGCYC 1 cut(s) 1189
Fsp4HI GCNGC 4 cut(s) 14, 228, 237, 693
FspBI CTAG 4 cut(s) 138, 224, 867, 1155
GlaI GCGC 2 cut(s) 662, 1565
GluI GCNGC 4 cut(s) 14, 228, 237, 693
GsuI CTGGAG 1 cut(s) 1266
HaeIII GGCC 2 cut(s) 135, 1372
HhaI GCGC 2 cut(s) 663, 1566
Hin6I GCGC 2 cut(s) 661, 1564
HinP1I GCGC 2 cut(s) 661, 1564
HincII GTYRAC 1 cut(s) 1525
HindII GTYRAC 1 cut(s) 1525
HindIII AAGCTT 2 cut(s) 917, 1048
HinfI GANTC 6 cut(s) 83, 127, 188, 1388, 1510, 1612
HphI GGTGA 3 cut(s) 469, 859, 1072
Hpy166II GTNNAC 4 cut(s) 1294, 1364, 1525, 1544
Hpy188I TCNGA 8 cut(s) 33, 58, 193, 349, 898, 1194, 1489, 1515
Hpy188III TCNNGA 9 cut(s) 87, 245, 481, 610, 730, 1142, 1169, 1283, 1496
Hpy8I GTNNAC 4 cut(s) 1294, 1364, 1525, 1544
HpyAV CCTTC 3 cut(s) 404, 764, 900
HpyCH4III ACNGT 5 cut(s) 356, 779, 974, 1249, 1602
HpyCH4IV ACGT 3 cut(s) 667, 1323, 1366
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 236, 660, 698, 1561
HpyF3I CTNAG 2 cut(s) 1009, 1051
HpySE526I ACGT 3 cut(s) 667, 1323, 1366
HspAI GCGC 2 cut(s) 661, 1564
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 6 cut(s) 252, 467, 600, 961, 1453, 1462
LmnI GCTCC 3 cut(s) 651, 1184, 1285
Lsp1109I GCAGC 3 cut(s) 223, 239, 704
LweI GCATC 4 cut(s) 248, 781, 1147, 1224
MaeI CTAG 4 cut(s) 138, 224, 867, 1155
MaeII ACGT 3 cut(s) 667, 1323, 1366
MaeIII GTNAC 4 cut(s) 422, 457, 974, 1319
MalI GATC 6 cut(s) 254, 469, 602, 963, 1455, 1464
MboI GATC 6 cut(s) 252, 467, 600, 961, 1453, 1462
MboII GAAGA 7 cut(s) 107, 318, 598, 862, 871, 1187, 1476
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 3 cut(s) 467, 1453, 1462
MhlI GDGCHC 1 cut(s) 1189
MluCI AATT 8 cut(s) 17, 412, 677, 760, 931, 1074, 1098, 1353
MlyI GAGTC 2 cut(s) 197, 1606
MmeI TCCRAC 4 cut(s) 104, 280, 317, 883
Mph1103I ATGCAT 3 cut(s) 521, 555, 1239
MroXI GAANNNNTTC 1 cut(s) 725
MseI TTAA 2 cut(s) 999, 1122
MspA1I CMGCKG 1 cut(s) 326
MspR9I CCNGG 3 cut(s) 384, 1277, 1460
MunI CAATTG 1 cut(s) 17
MvaI CCWGG 3 cut(s) 384, 1277, 1460
MwoI GCNNNNNNNGC 5 cut(s) 233, 236, 660, 698, 1561
NdeI CATATG 3 cut(s) 811, 1225, 1267
NdeII GATC 6 cut(s) 252, 467, 600, 961, 1453, 1462
NheI GCTAGC 1 cut(s) 223
NlaIV GGNNCC 5 cut(s) 494, 1006, 1186, 1281, 1464
NmuCI GTSAC 3 cut(s) 422, 457, 1319
NsiI ATGCAT 3 cut(s) 521, 555, 1239
NspI RCATGY 3 cut(s) 502, 553, 1553
PagI TCATGA 1 cut(s) 729
PceI AGGCCT 1 cut(s) 1372
PciI ACATGT 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 1147
PdmI GAANNNNTTC 1 cut(s) 725
PfeI GAWTC 4 cut(s) 83, 127, 1388, 1510
PflMI CCANNNNNTGG 4 cut(s) 123, 180, 1040, 1195
PfoI TCCNGGA 2 cut(s) 382, 1458
PkrI GCNGC 4 cut(s) 15, 229, 238, 694
PleI GAGTC 2 cut(s) 196, 1606
PpsI GAGTC 2 cut(s) 196, 1606
PscI ACATGT 1 cut(s) 498
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 382, 1275, 1458
PspGI CCWGG 3 cut(s) 382, 1275, 1458
PspN4I GGNNCC 5 cut(s) 494, 1006, 1186, 1281, 1464
PspPI GGNCC 2 cut(s) 134, 1004
PstNI CAGNNNCTG 2 cut(s) 291, 698
PsuI RGATCY 3 cut(s) 467, 1453, 1462
RsaI GTAC 4 cut(s) 808, 1164, 1295, 1543
RsaNI GTAC 4 cut(s) 807, 1163, 1294, 1542
SalI GTCGAC 1 cut(s) 1523
SaqAI TTAA 2 cut(s) 999, 1122
SatI GCNGC 4 cut(s) 14, 228, 237, 693
Sau3AI GATC 6 cut(s) 252, 467, 600, 961, 1453, 1462
Sau96I GGNCC 2 cut(s) 134, 1004
SchI GAGTC 2 cut(s) 197, 1606
ScrFI CCNGG 3 cut(s) 384, 1277, 1460
SduI GDGCHC 1 cut(s) 1189
SfaNI GCATC 4 cut(s) 248, 781, 1147, 1224
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 1 cut(s) 1004
SmlI CTYRAG 2 cut(s) 243, 1092
SmoI CTYRAG 2 cut(s) 243, 1092
Sse9I AATT 8 cut(s) 17, 412, 677, 760, 931, 1074, 1098, 1353
SseBI AGGCCT 1 cut(s) 1372
SsiI CCGC 7 cut(s) 42, 145, 324, 649, 673, 845, 1466
SspMI CTAG 4 cut(s) 138, 224, 867, 1155
StuI AGGCCT 1 cut(s) 1372
StyD4I CCNGG 3 cut(s) 382, 1275, 1458
StyI CCWWGG 3 cut(s) 117, 580, 1034
TaaI ACNGT 5 cut(s) 356, 779, 974, 1249, 1602
TaiI ACGT 3 cut(s) 670, 1326, 1369
TaqI TCGA 6 cut(s) 88, 441, 1045, 1413, 1444, 1524
TaqII GACCGA 2 cut(s) 735, 1381
TasI AATT 8 cut(s) 17, 412, 677, 760, 931, 1074, 1098, 1353
TatI WGTACW 3 cut(s) 1162, 1293, 1541
TfiI GAWTC 4 cut(s) 83, 127, 1388, 1510
Tru1I TTAA 2 cut(s) 999, 1122
Tru9I TTAA 2 cut(s) 999, 1122
TscAI CASTG 4 cut(s) 292, 948, 1254, 1510
TseFI GTSAC 3 cut(s) 422, 457, 1319
TseI GCWGC 4 cut(s) 13, 227, 236, 692
Tsp45I GTSAC 3 cut(s) 422, 457, 1319
TspGWI ACGGA 2 cut(s) 391, 1139
TspRI CASTG 4 cut(s) 292, 948, 1254, 1510
Van91I CCANNNNNTGG 4 cut(s) 123, 180, 1040, 1195
VpaK11BI GGWCC 1 cut(s) 1004
XapI RAATTY 2 cut(s) 760, 931
XceI RCATGY 3 cut(s) 502, 553, 1553
XmiI GTMKAC 1 cut(s) 1524
XmnI GAANNNNTTC 1 cut(s) 725
XspI CTAG 4 cut(s) 138, 224, 867, 1155
Zsp2I ATGCAT 3 cut(s) 521, 555, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.