Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004119

Physical Location & Seq

Genomic Coordinates Forward (+)

27010779 .. 27011255

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0273400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTTGTGGGTCTCAGCAGTCTTATTTTGGCTTTCATTAGGGTTTTCTTTTTTAGTTTAGTTTTTTGGTTAGTATCAATAAGTCCCTACTCAACTGAGCTAGGGTTTGGGATTCATGGTTTGGTAGTGGTGCCATTGTTTTGGCGTTATTCCCGGGAACTATGTGTTCTAAGATCGGTGCCTTCTGGTTGTCAACGTGATGGTGAATTGACCTCGCACGTGGTCTGGTGGTATTTGGACACGGTGCTTGAGAGGGTGAAATCGTTCGTCTTAATGTTGGTAGCAAGGTTGTATCGTAACACTCGGGATTGGTTCTCTGTCATTGTAGCCCATGGTTTGGGGCGTGAAATTTGGTTAGGGGTTGGGCTCATTTGGCTCATGGATGTCACTAATTGTGGTGGACCCATAACTATGGTTCTAGATAGGAATGTGCGTAGTGGTGTTGTGACCACAACCGGTCATTCTAATGCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_C Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.86

Weight (kDa)

9.02

Isoelectric Point (pI)

22.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52310 AT1G52310
fragaria_vesca	FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430
malus_domestica	MD12G1015200.v1.1 MD14G1013200.v1.1
prunus_persica	Prupe.7G025300_v2.0.a1 Prupe.7G025300_v2.0.a1
pyrus_communis	pycom12g01260 pycom14g01120
rosa_chinensis	RchiOBHm_Chr3g0495371
rosa_laevigata	RLG00000022627
rosa_multiflora	Rmu_sc0007953.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390540
rosa_rugosa	Rorug03G0273100 Rorug03G0273200 Rorug03G0273300 Rorug03G0273400 Rorug03G0273500
rosa_samantha	Rh3AG321000 Rh3BG356000 Rh3CG352900 Rh3DG355300
rosa_wichuraiana	Rw3G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	130, 178
AccB7I	CCANNNNNTGG	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	348
AcvI	CACGTG	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgeI	ACCGGT	1 cut(s)	455
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	17
Ama87I	CYCGRG	2 cut(s)	153, 303
ApoI	RAATTY	1 cut(s)	348
AsiGI	ACCGGT	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	2 cut(s)	154, 155
AsuHPI	GGTGA	2 cut(s)	215, 268
AvaI	CYCGRG	2 cut(s)	153, 303
AvaII	GGWCC	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	130, 178
BanII	GRGCYC	1 cut(s)	369
BbrPI	CACGTG	1 cut(s)	220
BccI	CCATC	1 cut(s)	194
BcnI	CCSGG	2 cut(s)	154, 155
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	101, 419
Bme1390I	CCNGG	2 cut(s)	154, 155
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	153, 303
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	132, 180, 403
BmrFI	CCNGG	2 cut(s)	154, 155
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	2 cut(s)	154, 155
BsaAI	YACGTR	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	153, 331
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	153, 331
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	28, 87
BshNI	GGYRCC	2 cut(s)	130, 178
BshTI	ACCGGT	1 cut(s)	455
BsiHKCI	CYCGRG	2 cut(s)	153, 303
BsiSI	CCGG	2 cut(s)	154, 456
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	2 cut(s)	153, 303
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	173
Bsp19I	CCATGG	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	27, 88
BspLI	GGNNCC	3 cut(s)	132, 180, 403
BspT107I	GGYRCC	2 cut(s)	130, 178
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	2 cut(s)	153, 331
BssMI	GATC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	14, 96, 170
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	152, 153
BstXI	CCANNNNNNTGG	2 cut(s)	141, 412
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	401
Cfr9I	CCCGGG	1 cut(s)	153
CspAI	ACCGGT	1 cut(s)	455
CviAII	CATG	3 cut(s)	116, 332, 379
CviJI	RGCY	5 cut(s)	32, 100, 329, 367, 376
CviKI_1	RGCY	5 cut(s)	32, 100, 329, 367, 376
DdeI	CTNAG	3 cut(s)	14, 96, 170
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	401
Eco72I	CACGTG	1 cut(s)	220
Eco88I	CYCGRG	2 cut(s)	153, 303
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	3 cut(s)	119, 335, 382
FaiI	YATR	6 cut(s)	117, 163, 333, 380, 407, 413
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	3 cut(s)	115, 331, 378
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	101, 419
HapII	CCGG	2 cut(s)	154, 456
Hin1II	CATG	3 cut(s)	119, 335, 382
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	2 cut(s)	154, 456
HphI	GGTGA	2 cut(s)	215, 268
Hpy166II	GTNNAC	2 cut(s)	194, 401
Hpy188III	TCNNGA	2 cut(s)	305, 419
Hpy8I	GTNNAC	2 cut(s)	194, 401
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	196, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	3 cut(s)	14, 96, 170
HpySE526I	ACGT	2 cut(s)	196, 219
Hsp92II	CATG	3 cut(s)	119, 335, 382
Kzo9I	GATC	1 cut(s)	173
LpnPI	CCDG	4 cut(s)	167, 171, 211, 469
MaeI	CTAG	2 cut(s)	101, 419
MaeII	ACGT	2 cut(s)	196, 219
MaeIII	GTNAC	3 cut(s)	296, 385, 445
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	206, 348, 391
MnlI	CCTC	2 cut(s)	223, 246
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	2 cut(s)	410, 465
MspI	CCGG	2 cut(s)	154, 456
MspR9I	CCNGG	2 cut(s)	154, 155
MwoI	GCNNNNNNNGC	1 cut(s)	373
NciI	CCSGG	2 cut(s)	154, 155
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	119, 335, 382
NlaIV	GGNNCC	3 cut(s)	132, 180, 403
NmuCI	GTSAC	2 cut(s)	385, 445
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	455
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	220
PspCI	CACGTG	1 cut(s)	220
PspN4I	GGNNCC	3 cut(s)	132, 180, 403
PspPI	GGNCC	1 cut(s)	401
RseI	CAYNNNNRTG	2 cut(s)	410, 465
SaqAI	TTAA	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	154, 155
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	5 cut(s)	102, 199, 215, 222, 290
SinI	GGWCC	1 cut(s)	401
SmaI	CCCGGG	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	410, 465
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	206, 348, 391
SspMI	CTAG	2 cut(s)	101, 419
StyD4I	CCNGG	2 cut(s)	152, 153
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	199, 222
TasI	AATT	3 cut(s)	206, 348, 391
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TseFI	GTSAC	2 cut(s)	385, 445
Tsp45I	GTSAC	2 cut(s)	385, 445
TspDTI	ATGAA	2 cut(s)	25, 104
TspMI	CCCGGG	1 cut(s)	153
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	348
XbaI	TCTAGA	1 cut(s)	418
XmaI	CCCGGG	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	2 cut(s)	101, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.