Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004119

Physical Location & Seq

Genomic Coordinates Forward (+)

43171896 .. 43176394

Gene Structure 4499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG355300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTTCTGATGGAAGGAAAGCTGCAATTGGTTTTGCTTCTGATTGTTTGCGGTTCGTGTGTTTCAGATAAGGTTCATACTGATTTGGTGGATTCTCGAACTGAAGAAAGTAAAGAACCATGCCCCAAGGGTTGGATTCTTGGCCCTAATAAGCGGAAGTGCTTTGCTTATATTAGAAGCCCCAAATCATGGAACGAGTCAGAGACCCATTGTAAAAGTTATAATGGACAGTTAGCAGCACTCGCTACATCTCAAGAACTGATCTTTGCTCAAAGCCTATGTGTTGAAACCATCAGTGGCTGTTGGGTTGGAGGAAGAGGTGTCAACTCTACCGCTGGTATTGATTGGAGTTGGTCTGATAACAGTTCATACTGGAATGTATCTCTCTTTCCTGGAAAACCCCTTCAATCCGTTTGCAGTAATTTGTCTTGTCACACCAAAAGTTCTGTCGATGTTTGTGTATTGGTGACTAATGGATCACTCTTGATGGAGAGGTGCCACATGTCTCATGCTTTTATATGCATGGCTGATTTAGGGAACAGATGTTTCCACATGCATTGCCACAGAGAATATCTCATCATCCTTGGAGTTGTAAGTGGGTTGATCCTCTTCACGACATTAGCTGTAGTGATTTGGCTTCTTGCATACAAGCGGAGCAAGAAGCGCAGACGTTCCCGCAAATTATCTAATCCAGCAGCTACTGCATTAGTCCCTCCATCGTGGAAAGTGTTCATGAAAGAGGAACTTCGGTCTATTACAAAGAATTTTAGTGAAGGAAACCGTCTCTTGGGAGATGCCAAGACAGGAGGTACATATGGTGGGCTTCTACCTGATGGTTCAAGGGTAGCGGTGAAAAGATTGAAGAAGTCTAGTTTTCAAAGGAAAAAGGAGTTTTATTCTGAAGTTGGAAGGGTTGCAAAGCTTCATCATCCAAATTTGGTGGCAGTGAAAGGCTGCTGTTATGATCATGGTGACCGTTACATTGTTTATGAGTTCATAGTTAATGGTCCCTTAGATAGATGGCTACACCACATACCAAGGGGTGGTCGAAGCTTAGATTGGGTGATGAGAATGAAAATTGCGACAACTCTTGCTCAAGGAATTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_C Pkinase_Tyr

Protein Analysis

369

Amino Acids

41.24

Weight (kDa)

9.41

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_C	PF00059	61 - 175	5.9e-10	Lectin C-type domain
Pkinase	PF00069	261 - 347	2.9e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	263 - 368	2.9e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52310 AT1G52310
fragaria_vesca	FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430
malus_domestica	MD12G1015200.v1.1 MD14G1013200.v1.1
prunus_persica	Prupe.7G025300_v2.0.a1 Prupe.7G025300_v2.0.a1
pyrus_communis	pycom12g01260 pycom14g01120
rosa_chinensis	RchiOBHm_Chr3g0495371
rosa_laevigata	RLG00000022627
rosa_multiflora	Rmu_sc0007953.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390540
rosa_rugosa	Rorug03G0273100 Rorug03G0273200 Rorug03G0273300 Rorug03G0273400 Rorug03G0273500
rosa_samantha	Rh3AG321000 Rh3BG356000 Rh3CG352900 Rh3DG355300
rosa_wichuraiana	Rw3G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	495
AccB7I	CCANNNNNTGG	3 cut(s)	132, 189, 1043
AciI	CCGC	6 cut(s)	51, 154, 333, 652, 676, 848
AclWI	GGATC	2 cut(s)	484, 598
AcsI	RAATTY	2 cut(s)	763, 934
AcuI	CTGAAG	2 cut(s)	123, 921
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	4 cut(s)	132, 189, 787, 1043
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	5 cut(s)	287, 407, 840, 862, 878
AjnI	CCWGG	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	2 cut(s)	1042, 1074
AluBI	AGCT	5 cut(s)	22, 623, 698, 922, 1053
AluI	AGCT	5 cut(s)	22, 623, 698, 922, 1053
Alw26I	GTCTC	3 cut(s)	197, 510, 788
AlwI	GGATC	2 cut(s)	484, 598
AlwNI	CAGNNNCTG	2 cut(s)	300, 701
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	4 cut(s)	22, 236, 695, 954
ApoI	RAATTY	2 cut(s)	763, 934
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
Asp700I	GAANNNNTTC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	666
AspS9I	GGNCC	2 cut(s)	143, 1007
AsuHPI	GGTGA	4 cut(s)	478, 862, 983, 1075
AvaII	GGWCC	1 cut(s)	1007
BanI	GGYRCC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	9, 248, 707, 941
BccI	CCATC	6 cut(s)	4, 299, 481, 724, 827, 1014
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	964
BcoDI	GTCTC	3 cut(s)	197, 510, 788
BfaI	CTAG	1 cut(s)	870
BfmI	CTRYAG	1 cut(s)	624
BisI	GCNGC	4 cut(s)	23, 237, 696, 955
BlsI	GCNGC	4 cut(s)	24, 238, 697, 956
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	1007
BmgT120I	GGNCC	2 cut(s)	143, 1007
BmiI	GGNNCC	2 cut(s)	497, 1009
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	558, 590
BpuEI	CTTGAG	2 cut(s)	237, 1080
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	126, 583, 1037
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 189, 787, 1043
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	126, 583, 1037
BseGI	GGATG	2 cut(s)	579, 928
BseLI	CCNNNNNNNGG	4 cut(s)	132, 189, 787, 1043
BseMI	GCAATG	1 cut(s)	556
BseNI	ACTGG	1 cut(s)	377
BseXI	GCAGC	4 cut(s)	9, 248, 707, 941
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	695, 993
BslI	CCNNNNNNNGG	4 cut(s)	132, 189, 787, 1043
BsmAI	GTCTC	3 cut(s)	197, 510, 788
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	2 cut(s)	695, 993
BsnI	GGCC	1 cut(s)	144
Bso31I	GGTCTC	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	261, 476, 603, 964
BspACI	CCGC	6 cut(s)	51, 154, 333, 652, 676, 848
BspANI	GGCC	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	2 cut(s)	497, 1009
BspPI	GGATC	2 cut(s)	484, 598
BspT107I	GGYRCC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	3 cut(s)	126, 583, 1037
BssMI	GATC	4 cut(s)	261, 476, 603, 964
BssT1I	CCWWGG	3 cut(s)	126, 583, 1037
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	4 cut(s)	231, 365, 782, 977
Bst6I	CTCTTC	2 cut(s)	310, 614
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstDEI	CTNAG	2 cut(s)	1012, 1054
BstEII	GGTNACC	1 cut(s)	971
BstF5I	GGATG	2 cut(s)	579, 928
BstHHI	GCGC	1 cut(s)	666
BstKTI	GATC	4 cut(s)	264, 479, 606, 967
BstMAI	GTCTC	3 cut(s)	197, 510, 788
BstMBI	GATC	4 cut(s)	261, 476, 603, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 663, 701
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	2 cut(s)	505, 556
BstPI	GGTNACC	1 cut(s)	971
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	4 cut(s)	9, 248, 707, 941
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	579, 928
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	2 cut(s)	301, 951
CaiI	CAGNNNCTG	2 cut(s)	300, 701
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	1 cut(s)	666
Cfr13I	GGNCC	2 cut(s)	143, 1007
Csp6I	GTAC	1 cut(s)	810
CspCI	CAANNNNNGTGG	4 cut(s)	539, 574, 921, 956
CviAII	CATG	8 cut(s)	120, 189, 502, 509, 523, 553, 733, 968
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	2 cut(s)	1012, 1054
DpnI	GATC	4 cut(s)	263, 478, 605, 966
DpnII	GATC	4 cut(s)	261, 476, 603, 964
Eam1104I	CTCTTC	2 cut(s)	310, 614
EarI	CTCTTC	2 cut(s)	310, 614
Eco130I	CCWWGG	3 cut(s)	126, 583, 1037
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	1007
Eco57I	CTGAAG	2 cut(s)	123, 921
Eco91I	GGTNACC	1 cut(s)	971
EcoO65I	GGTNACC	1 cut(s)	971
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	3 cut(s)	126, 583, 1037
EcoT22I	ATGCAT	2 cut(s)	524, 558
ErhI	CCWWGG	3 cut(s)	126, 583, 1037
Esp3I	CGTCTC	1 cut(s)	788
FaeI	CATG	8 cut(s)	123, 192, 505, 512, 526, 556, 736, 971
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	2 cut(s)	695, 993
FatI	CATG	8 cut(s)	119, 188, 501, 508, 522, 552, 732, 967
FauI	CCCGC	1 cut(s)	683
FauNDI	CATATG	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	4 cut(s)	23, 237, 696, 955
FokI	GGATG	2 cut(s)	566, 915
Fsp4HI	GCNGC	4 cut(s)	23, 237, 696, 955
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	1 cut(s)	665
GluI	GCNGC	4 cut(s)	23, 237, 696, 955
HaeIII	GGCC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	666
Hin1II	CATG	8 cut(s)	123, 192, 505, 512, 526, 556, 736, 971
Hin6I	GCGC	1 cut(s)	664
HinP1I	GCGC	1 cut(s)	664
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	2 cut(s)	920, 1051
HinfI	GANTC	3 cut(s)	92, 136, 197
HphI	GGTGA	4 cut(s)	478, 862, 983, 1075
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	6 cut(s)	9, 42, 67, 202, 358, 901
Hpy188III	TCNNGA	5 cut(s)	96, 254, 484, 613, 733
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	8, 413, 767, 903
HpyCH4III	ACNGT	4 cut(s)	231, 365, 782, 977
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	7 cut(s)	25, 417, 522, 556, 644, 704, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 663, 701
HpyF3I	CTNAG	2 cut(s)	1012, 1054
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	8 cut(s)	123, 192, 505, 512, 526, 556, 736, 971
HspAI	GCGC	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	4 cut(s)	261, 476, 603, 964
LmnI	GCTCC	1 cut(s)	654
LpnPI	CCDG	7 cut(s)	321, 358, 378, 405, 705, 789, 843
Lsp1109I	GCAGC	4 cut(s)	9, 248, 707, 941
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	4 cut(s)	431, 466, 971, 977
MalI	GATC	4 cut(s)	263, 478, 605, 966
MboI	GATC	4 cut(s)	261, 476, 603, 964
MboII	GAAGA	4 cut(s)	116, 327, 601, 874
MfeI	CAATTG	1 cut(s)	26
MluCI	AATT	7 cut(s)	26, 421, 680, 763, 934, 1077, 1101
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	3 cut(s)	113, 289, 886
MnlI	CCTC	7 cut(s)	305, 311, 486, 617, 723, 733, 800
Mph1103I	ATGCAT	2 cut(s)	524, 558
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	1 cut(s)	1002
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	242, 663, 701
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	4 cut(s)	261, 476, 603, 964
NlaIII	CATG	8 cut(s)	123, 192, 505, 512, 526, 556, 736, 971
NlaIV	GGNNCC	2 cut(s)	497, 1009
NmuCI	GTSAC	3 cut(s)	431, 466, 971
NsiI	ATGCAT	2 cut(s)	524, 558
NspI	RCATGY	2 cut(s)	505, 556
PagI	TCATGA	1 cut(s)	732
PciI	ACATGT	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	92, 136
PflMI	CCANNNNNTGG	3 cut(s)	132, 189, 1043
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	24, 238, 697, 956
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	501
PsiI	TTATAA	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	391
PspEI	GGTNACC	1 cut(s)	971
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	497, 1009
PspPI	GGNCC	2 cut(s)	143, 1007
PstNI	CAGNNNCTG	2 cut(s)	300, 701
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	1002
SatI	GCNGC	4 cut(s)	23, 237, 696, 955
Sau3AI	GATC	4 cut(s)	261, 476, 603, 964
Sau96I	GGNCC	2 cut(s)	143, 1007
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	1007
SmlI	CTYRAG	2 cut(s)	252, 1095
SmoI	CTYRAG	2 cut(s)	252, 1095
Sse9I	AATT	7 cut(s)	26, 421, 680, 763, 934, 1077, 1101
SsiI	CCGC	6 cut(s)	51, 154, 333, 652, 676, 848
SspMI	CTAG	1 cut(s)	870
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	3 cut(s)	126, 583, 1037
TaaI	ACNGT	4 cut(s)	231, 365, 782, 977
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	3 cut(s)	97, 450, 1048
TaqII	GACCGA	1 cut(s)	738
TasI	AATT	7 cut(s)	26, 421, 680, 763, 934, 1077, 1101
TfiI	GAWTC	2 cut(s)	92, 136
Tru1I	TTAA	1 cut(s)	1002
Tru9I	TTAA	1 cut(s)	1002
TscAI	CASTG	2 cut(s)	301, 951
TseFI	GTSAC	3 cut(s)	431, 466, 971
TseI	GCWGC	4 cut(s)	22, 236, 695, 954
Tsp45I	GTSAC	3 cut(s)	431, 466, 971
TspDTI	ATGAA	7 cut(s)	65, 357, 721, 749, 914, 985, 1088
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	2 cut(s)	301, 951
Van91I	CCANNNNNTGG	3 cut(s)	132, 189, 1043
VpaK11BI	GGWCC	1 cut(s)	1007
XapI	RAATTY	2 cut(s)	763, 934
XceI	RCATGY	2 cut(s)	505, 556
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	1 cut(s)	870
Zsp2I	ATGCAT	2 cut(s)	524, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.