Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017976

Physical Location & Seq

Genomic Coordinates Forward (+)

24188318 .. 24191577

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30481.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGCAGACTTCAGTGGAAAATCAGGTTGCATGCTGTTTCTTCATCCCTTGCTGAAACTTTCAGATCAGAGTGACCTCTTCTATCAGTTTCCTTATCTCCAATACATGTTACATGACTGTAATGGCAAAGAAAAATACTTGAAGTCGATAAATAATGGTTGCAGTTATTCTATTTCCAAGCGAGACATTGGCATGCTCCATTCGATATTGGTAGCTGGAGATGTTGCTACACCAGAATTAGATATCTTTCTTGTGACCCATGTTATCAATTATGACTGTCCGAACAGCATATATGATTATATTCACAAGTCTAGCTGTATTGATATGTTAGTGGAGATAACCAAGGAATCAATGCAGGAGGTTGTTAATTGGCTTCATGGTGATGCTAAAAAGCCATGGTATTCGAGACTGAAAGCTAATTGGTCCACTCACAGCTCGAATGACTCACCTCTGTCGTTCCCACTATCAGTACTTGAATTCTCTAAGCCTGCAGTCGGCACTGGGTTGAGGTACTCTTCTGGTAATCAAACTGTTTTAATGCCTACTGTTGTTATTCAACCTGTTGTGCTCCCACTTTTCGATGCTTGGTTACTGTTGCTTCATGACCATATGTGTAGTAGTGGCAGCAATACTTCACTTTCTATGTCACCAAATTTTGCACTGGGAACTACCTCACGTGTCTCTACATATACGAGTCTTATGCTTGCCAATATGTTGAACCACAAGAAAGCAACACTTGATGTTATTTTCCCTATGGATATCTTCTATGTTGATTATGCGTTGACAAGGATAGAGATCGCCACATCTTGGATTTTGCTCTCTACACCACTGTTTTATTTAACAGTGTGGGTACCTAACTTGCACAGTTGGATTGTGATCAAGGCACACTTGTTAATTGATGATGCCTTCTTGATAACAGAGATTACGTTTGGAAATGAATTACTCATCATTCTCGGTGGAGTTATGGCCATTGGACATGTTTGTCATATTGGTGCAACCTTGCAAATTAACTCTTTTATACACATGGTACTCCTTAATATGTATCGGCTGGCCACACATGTGATTTTATGGGAAACTACTGATACATGGGCATATTTTCAAGTTTCTTTTGACTCTGCTCTTGCAAGGGTCTGGCAAAATGCCAATGAAGGTTTTCACAGGGTCTACTGGTATCTTATGCTGTTCAACTGTGATACTCCTCATGTTATGGTTTTAGTTTGGTCGAGATATTGGCGACTGGTTTATATTTCAGAATGGGATTTGCTGATTATGGAATCAGGTGCAACAAAGCAGTCTAAAGCTGACAAGCTGATGGTAAGAGATGTTCAAGGACTTATTTTGACATGGAGTTGTTCCGAACAAAAGAAAGCCACCAAGAGTATGATGTTTGTGCCTCTACTTGCATGTATAGTGGATGGTCATGTGGGGTTGCCATTCTTGTCGAAACTTATTGACAATATAGCACGCCAGCGAGCCTTGCTATTCCATGTCTCTACAATTCCTCTTGGTCTCAGTGGTTATGCTAGCAGAAGACCATCCATAATGACAATTTTGGCCAAGGCATCTGGCTTTGCCGAGCTTGTGAAGGGGCTCTCCATGCACCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

537

Amino Acids

60.61

Weight (kDa)

6.71

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017976)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30481 FvH4_1g30560 FvH4_c4g00030
pyrus_communis	pycom05g12520 pycom12g01350
rosa_chinensis	RchiOBHm_Chr7g0214251
rosa_multiflora	Rmu_sc0000410.1_g000007 Rmu_sc0001154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00313870 Rroxscaffold_4G00323230 Rroxscaffold_5G00382810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	981
Acc65I	GGTACC	1 cut(s)	850
AccB1I	GGYRCC	1 cut(s)	850
AccB7I	CCANNNNNTGG	1 cut(s)	807
AccI	GTMKAC	1 cut(s)	1164
AcoI	YGGCCR	3 cut(s)	966, 1050, 1554
AcsI	RAATTY	2 cut(s)	476, 652
AcvI	CACGTG	1 cut(s)	677
AfaI	GTAC	4 cut(s)	471, 512, 852, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	494, 807
AflIII	ACRYGT	4 cut(s)	105, 676, 976, 1057
AgsI	TTSAA	7 cut(s)	142, 476, 557, 718, 1100, 1186, 1328
AleI	CACNNNNGTG	1 cut(s)	1058
AluBI	AGCT	7 cut(s)	215, 315, 416, 435, 1301, 1309, 1579
AluI	AGCT	7 cut(s)	215, 315, 416, 435, 1301, 1309, 1579
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	5 cut(s)	177, 400, 685, 1495, 1514
AoxI	GGCC	3 cut(s)	966, 1050, 1554
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	2 cut(s)	476, 652
Asp700I	GAANNNNTTC	1 cut(s)	1152
Asp718I	GGTACC	1 cut(s)	850
AspS9I	GGNCC	1 cut(s)	423
AsuHPI	GGTGA	3 cut(s)	392, 438, 639
AsuNHI	GCTAGC	1 cut(s)	1523
AvaII	GGWCC	1 cut(s)	423
BalI	TGGCCA	3 cut(s)	968, 1052, 1556
BanI	GGYRCC	1 cut(s)	850
BanII	GRGCYC	1 cut(s)	1593
BbrPI	CACGTG	1 cut(s)	677
BbsI	GAAGAC	1 cut(s)	1537
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	3 cut(s)	1306, 1409, 1543
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BclI	TGATCA	1 cut(s)	876
BcoDI	GTCTC	5 cut(s)	177, 400, 685, 1495, 1514
BfaI	CTAG	2 cut(s)	312, 1524
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	1 cut(s)	625
BlsI	GCNGC	1 cut(s)	626
BmcAI	AGTACT	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	852
BmrI	ACTGGG	2 cut(s)	510, 671
BmsI	GCATC	4 cut(s)	373, 571, 892, 1571
BmtI	GCTAGC	1 cut(s)	1527
BmuI	ACTGGG	2 cut(s)	510, 671
BpiI	GAAGAC	1 cut(s)	1537
BpmI	CTGGAG	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	677
BsaBI	GATNNNNATC	2 cut(s)	794, 875
BsaI	GGTCTC	1 cut(s)	1514
BsaJI	CCNNGG	3 cut(s)	342, 395, 1557
Bsc4I	CCNNNNNNNGG	2 cut(s)	494, 807
Bse1I	ACTGG	4 cut(s)	505, 666, 1172, 1242
Bse8I	GATNNNNATC	2 cut(s)	794, 875
BseDI	CCNNGG	3 cut(s)	342, 395, 1557
BseGI	GGATG	3 cut(s)	43, 1420, 1535
BseJI	GATNNNNATC	2 cut(s)	794, 875
BseLI	CCNNNNNNNGG	2 cut(s)	494, 807
BseMII	CTCAG	1 cut(s)	1525
BseNI	ACTGG	4 cut(s)	505, 666, 1172, 1242
BseRI	GAGGAG	1 cut(s)	1188
BseXI	GCAGC	1 cut(s)	636
BshFI	GGCC	3 cut(s)	968, 1052, 1556
BshNI	GGYRCC	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	494, 807
BsmAI	GTCTC	5 cut(s)	177, 400, 685, 1495, 1514
BsnI	GGCC	3 cut(s)	968, 1052, 1556
Bso31I	GGTCTC	1 cut(s)	1514
Bsp1286I	GDGCHC	2 cut(s)	570, 1593
Bsp143I	GATC	3 cut(s)	64, 795, 876
Bsp19I	CCATGG	1 cut(s)	395
BspANI	GGCC	3 cut(s)	968, 1052, 1556
BspCNI	CTCAG	1 cut(s)	1524
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	852
BspMAI	CTGCAG	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	1527
BspT107I	GGYRCC	1 cut(s)	850
BspTNI	GGTCTC	1 cut(s)	1514
BsrI	ACTGG	4 cut(s)	505, 666, 1172, 1242
BssECI	CCNNGG	3 cut(s)	342, 395, 1557
BssMI	GATC	3 cut(s)	64, 795, 876
BssT1I	CCWWGG	3 cut(s)	342, 395, 1557
Bst4CI	ACNGT	9 cut(s)	119, 278, 532, 547, 594, 831, 844, 866, 1190
Bst6I	CTCTTC	2 cut(s)	83, 520
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	9 cut(s)	32, 194, 489, 705, 1050, 1465, 1469, 1473, 1525
BstDEI	CTNAG	2 cut(s)	483, 1511
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	3 cut(s)	43, 1420, 1535
BstKTI	GATC	3 cut(s)	67, 798, 879
BstMAI	GTCTC	5 cut(s)	177, 400, 685, 1495, 1514
BstMBI	GATC	3 cut(s)	64, 795, 876
BstMWI	GCNNNNNNNGC	2 cut(s)	1477, 1597
BstNSI	RCATGY	6 cut(s)	34, 109, 196, 980, 1061, 1407
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	636
BstV2I	GAAGAC	1 cut(s)	1537
BsuRI	GGCC	3 cut(s)	968, 1052, 1556
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	3 cut(s)	43, 1420, 1535
BtsIMutI	CAGTG	6 cut(s)	19, 498, 659, 827, 849, 1519
Cac8I	GCNNGC	9 cut(s)	32, 194, 489, 705, 1050, 1465, 1469, 1473, 1525
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	423
Csp6I	GTAC	4 cut(s)	470, 511, 851, 1028
CviQI	GTAC	4 cut(s)	470, 511, 851, 1028
DdeI	CTNAG	2 cut(s)	483, 1511
DpnI	GATC	3 cut(s)	66, 797, 878
DpnII	GATC	3 cut(s)	64, 795, 876
DrdI	GACNNNNNNGTC	1 cut(s)	981
DseDI	GACNNNNNNGTC	1 cut(s)	981
EaeI	YGGCCR	3 cut(s)	966, 1050, 1554
Eam1104I	CTCTTC	2 cut(s)	83, 520
EarI	CTCTTC	2 cut(s)	83, 520
Eco130I	CCWWGG	3 cut(s)	342, 395, 1557
Eco24I	GRGCYC	1 cut(s)	1593
Eco31I	GGTCTC	1 cut(s)	1514
Eco32I	GATATC	2 cut(s)	244, 760
Eco47I	GGWCC	1 cut(s)	423
Eco72I	CACGTG	1 cut(s)	677
EcoRI	GAATTC	1 cut(s)	476
EcoRV	GATATC	2 cut(s)	244, 760
EcoT14I	CCWWGG	3 cut(s)	342, 395, 1557
EcoT38I	GRGCYC	1 cut(s)	1593
ErhI	CCWWGG	3 cut(s)	342, 395, 1557
FalI	AAGNNNNNCTT	4 cut(s)	720, 752, 872, 904
FauNDI	CATATG	1 cut(s)	609
FbaI	TGATCA	1 cut(s)	876
FblI	GTMKAC	1 cut(s)	1164
Fnu4HI	GCNGC	1 cut(s)	625
FokI	GGATG	3 cut(s)	30, 1427, 1522
FriOI	GRGCYC	1 cut(s)	1593
Fsp4HI	GCNGC	1 cut(s)	625
FspBI	CTAG	2 cut(s)	312, 1524
GluI	GCNGC	1 cut(s)	625
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	968, 1052, 1556
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HinfI	GANTC	5 cut(s)	347, 443, 694, 1112, 1274
HphI	GGTGA	3 cut(s)	392, 438, 639
Hpy166II	GTNNAC	3 cut(s)	426, 783, 1165
Hpy188I	TCNGA	5 cut(s)	64, 69, 282, 1252, 1357
Hpy188III	TCNNGA	4 cut(s)	405, 602, 910, 1224
Hpy8I	GTNNAC	3 cut(s)	426, 783, 1165
HpyAV	CCTTC	3 cut(s)	916, 1142, 1579
HpyCH4III	ACNGT	9 cut(s)	119, 278, 532, 547, 594, 831, 844, 866, 1190
HpyCH4IV	ACGT	2 cut(s)	676, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1477, 1597
HpyF3I	CTNAG	2 cut(s)	483, 1511
HpySE526I	ACGT	2 cut(s)	676, 926
KpnI	GGTACC	1 cut(s)	854
Ksp22I	TGATCA	1 cut(s)	876
Kzo9I	GATC	3 cut(s)	64, 795, 876
LmnI	GCTCC	2 cut(s)	201, 573
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	4 cut(s)	373, 571, 892, 1571
MaeI	CTAG	2 cut(s)	312, 1524
MaeII	ACGT	2 cut(s)	676, 926
MaeIII	GTNAC	5 cut(s)	71, 108, 253, 588, 645
MalI	GATC	3 cut(s)	66, 797, 878
MboI	GATC	3 cut(s)	64, 795, 876
MboII	GAAGA	5 cut(s)	32, 70, 507, 754, 1542
MhlI	GDGCHC	2 cut(s)	570, 1593
MlsI	TGGCCA	3 cut(s)	968, 1052, 1556
MluNI	TGGCCA	3 cut(s)	968, 1052, 1556
MlyI	GAGTC	3 cut(s)	437, 703, 1106
MmeI	TCCRAC	1 cut(s)	848
MnlI	CCTC	8 cut(s)	86, 352, 459, 501, 682, 1209, 1404, 1512
Mox20I	TGGCCA	3 cut(s)	968, 1052, 1556
MroXI	GAANNNNTTC	1 cut(s)	1152
MscI	TGGCCA	3 cut(s)	968, 1052, 1556
MseI	TTAA	7 cut(s)	366, 536, 839, 893, 1008, 1035, 1609
MslI	CAYNNNNRTG	4 cut(s)	191, 381, 990, 1058
Msp20I	TGGCCA	3 cut(s)	968, 1052, 1556
MwoI	GCNNNNNNNGC	2 cut(s)	1477, 1597
NcoI	CCATGG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	3 cut(s)	64, 795, 876
NheI	GCTAGC	1 cut(s)	1523
NlaIV	GGNNCC	1 cut(s)	852
NmeAIII	GCCGAG	1 cut(s)	1600
NmuCI	GTSAC	3 cut(s)	71, 253, 645
NspI	RCATGY	6 cut(s)	34, 109, 196, 980, 1061, 1407
OliI	CACNNNNGTG	1 cut(s)	1058
PaeI	GCATGC	2 cut(s)	34, 196
PagI	TCATGA	1 cut(s)	601
PciI	ACATGT	3 cut(s)	105, 976, 1057
PdmI	GAANNNNTTC	1 cut(s)	1152
PfeI	GAWTC	2 cut(s)	347, 1274
PflMI	CCANNNNNTGG	1 cut(s)	807
PkrI	GCNGC	1 cut(s)	626
PleI	GAGTC	3 cut(s)	437, 702, 1106
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
PpsI	GAGTC	3 cut(s)	437, 702, 1106
Ppu21I	YACGTR	1 cut(s)	677
PscI	ACATGT	3 cut(s)	105, 976, 1057
PspCI	CACGTG	1 cut(s)	677
PspN4I	GGNNCC	1 cut(s)	852
PspPI	GGNCC	1 cut(s)	423
PsrI	GAACNNNNNNTAC	2 cut(s)	1308, 1340
PstI	CTGCAG	1 cut(s)	493
RsaI	GTAC	4 cut(s)	471, 512, 852, 1029
RsaNI	GTAC	4 cut(s)	470, 511, 851, 1028
RseI	CAYNNNNRTG	4 cut(s)	191, 381, 990, 1058
SaqAI	TTAA	7 cut(s)	366, 536, 839, 893, 1008, 1035, 1609
SatI	GCNGC	1 cut(s)	625
Sau3AI	GATC	3 cut(s)	64, 795, 876
Sau96I	GGNCC	1 cut(s)	423
ScaI	AGTACT	1 cut(s)	471
SchI	GAGTC	3 cut(s)	437, 703, 1106
SduI	GDGCHC	2 cut(s)	570, 1593
SfaNI	GCATC	4 cut(s)	373, 571, 892, 1571
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	4 cut(s)	191, 381, 990, 1058
SphI	GCATGC	2 cut(s)	34, 196
SspMI	CTAG	2 cut(s)	312, 1524
StyI	CCWWGG	3 cut(s)	342, 395, 1557
TaaI	ACNGT	9 cut(s)	119, 278, 532, 547, 594, 831, 844, 866, 1190
TaiI	ACGT	2 cut(s)	679, 929
TaqI	TCGA	7 cut(s)	146, 203, 404, 437, 579, 1223, 1442
TatI	WGTACW	1 cut(s)	469
TfiI	GAWTC	2 cut(s)	347, 1274
Tru1I	TTAA	7 cut(s)	366, 536, 839, 893, 1008, 1035, 1609
Tru9I	TTAA	7 cut(s)	366, 536, 839, 893, 1008, 1035, 1609
TscAI	CASTG	6 cut(s)	19, 505, 666, 834, 849, 1519
TseFI	GTSAC	3 cut(s)	71, 253, 645
TseI	GCWGC	1 cut(s)	624
Tsp45I	GTSAC	3 cut(s)	71, 253, 645
TspDTI	ATGAA	5 cut(s)	32, 365, 590, 951, 1161
TspRI	CASTG	6 cut(s)	19, 505, 666, 834, 849, 1519
Van91I	CCANNNNNTGG	1 cut(s)	807
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	2 cut(s)	476, 652
XceI	RCATGY	6 cut(s)	34, 109, 196, 980, 1061, 1407
XmiI	GTMKAC	1 cut(s)	1164
XmnI	GAANNNNTTC	1 cut(s)	1152
XspI	CTAG	2 cut(s)	312, 1524
ZrmI	AGTACT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.