Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017976

Physical Location & Seq

Genomic Coordinates Reverse (-)

24239161 .. 24242011

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCAGACTTCAGTGGAAAATCAGGTTGCATGCTGTTTCTTCATCCCTTGCTGAAACTTTCAGATCAGAGTGACCTCTTCTATCAGTTTCCTTATCTCCAATACATGTTACATGACTGTAATGGCAAAGAAAAATACTTGAAGTCGATAAATAATGGTTGCAGTTATTCTATTTCCAAGCGAGACATTGGCATGCTCCATTCGATATTGGTAGCTGGAGATGTTGCTACACCAGAATTAGATATCTTTCTTGTGACCCATGTTATCAATTATGACTGTCCGAACAGCATATATGATTATATTCACAAGTCTAGCTGTATTGATATGTTAGTGGAGTTAACCAAGGAATCAATGCAGGAGGTTGTTAATGGGCTTCATGGTGATGCTAAAAAGCCATGGTATTCGAGACTGAAAGCTAATTGGTCCACTCACAGCTCGAATGACTCACCTGTGTTGTTCCCACTATCAGTACTTGAATTCTCTAAGCCTGCAGTCGGCACTGGGTTGAGGTACTCTTCTGCATTTAATGGCAGTATTAATAAATTGCAGCTCAAGTATGTGCAGAAAGCAAATAACATAGCGATAGATCTGCCCAAAAAGGGTCTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

204

Amino Acids

22.75

Weight (kDa)

7.65

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017976)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30481 FvH4_1g30560 FvH4_c4g00030
pyrus_communis	pycom05g12520 pycom12g01350
rosa_chinensis	RchiOBHm_Chr7g0214251
rosa_multiflora	Rmu_sc0000410.1_g000007 Rmu_sc0001154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00313870 Rroxscaffold_4G00323230 Rroxscaffold_5G00382810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	2 cut(s)	471, 512
AfiI	CCNNNNNNNGG	2 cut(s)	494, 599
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	142, 476
AluBI	AGCT	5 cut(s)	215, 315, 416, 435, 550
AluI	AGCT	5 cut(s)	215, 315, 416, 435, 550
Alw26I	GTCTC	2 cut(s)	177, 400
ApeKI	GCWGC	1 cut(s)	547
ApoI	RAATTY	1 cut(s)	476
AseI	ATTAAT	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	392, 438
AvaII	GGWCC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	559
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BcoDI	GTCTC	2 cut(s)	177, 400
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	489
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	1 cut(s)	548
BlsI	GCNGC	1 cut(s)	549
BmcAI	AGTACT	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	342, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	494, 599
Bse1I	ACTGG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	342, 395
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	494, 599
BseNI	ACTGG	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	581
BslI	CCNNNNNNNGG	2 cut(s)	494, 599
BsmAI	GTCTC	2 cut(s)	177, 400
Bsp143I	GATC	2 cut(s)	64, 586
Bsp19I	CCATGG	1 cut(s)	395
BspMAI	CTGCAG	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	342, 395
BssMI	GATC	2 cut(s)	64, 586
BssT1I	CCWWGG	2 cut(s)	342, 395
Bst4CI	ACNGT	2 cut(s)	119, 278
Bst6I	CTCTTC	2 cut(s)	83, 520
BstC8I	GCNNGC	3 cut(s)	32, 194, 489
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	67, 589
BstMAI	GTCTC	2 cut(s)	177, 400
BstMBI	GATC	2 cut(s)	64, 586
BstNSI	RCATGY	3 cut(s)	34, 109, 196
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	19, 498
Cac8I	GCNNGC	3 cut(s)	32, 194, 489
Cfr13I	GGNCC	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	470, 511
CviAII	CATG	7 cut(s)	31, 106, 113, 193, 260, 377, 396
CviJI	RGCY	8 cut(s)	215, 315, 373, 394, 416, 435, 487, 550
CviKI_1	RGCY	8 cut(s)	215, 315, 373, 394, 416, 435, 487, 550
CviQI	GTAC	2 cut(s)	470, 511
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	2 cut(s)	66, 588
DpnII	GATC	2 cut(s)	64, 586
Eam1104I	CTCTTC	2 cut(s)	83, 520
EarI	CTCTTC	2 cut(s)	83, 520
Eco130I	CCWWGG	2 cut(s)	342, 395
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	476
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	342, 395
ErhI	CCWWGG	2 cut(s)	342, 395
FaeI	CATG	7 cut(s)	34, 109, 116, 196, 263, 380, 399
FatI	CATG	7 cut(s)	30, 105, 112, 192, 259, 376, 395
Fnu4HI	GCNGC	1 cut(s)	548
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	548
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	237
Hin1II	CATG	7 cut(s)	34, 109, 116, 196, 263, 380, 399
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	347, 443
HpaI	GTTAAC	1 cut(s)	339
HphI	GGTGA	2 cut(s)	392, 438
Hpy166II	GTNNAC	2 cut(s)	339, 426
Hpy188I	TCNGA	3 cut(s)	64, 69, 282
Hpy188III	TCNNGA	2 cut(s)	405, 609
Hpy8I	GTNNAC	2 cut(s)	339, 426
HpyCH4III	ACNGT	2 cut(s)	119, 278
HpyCH4V	TGCA	7 cut(s)	30, 162, 355, 491, 521, 547, 562
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	7 cut(s)	34, 109, 116, 196, 263, 380, 399
KspAI	GTTAAC	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	64, 586
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	7 cut(s)	9, 201, 246, 341, 462, 486, 501
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	71, 108, 253
MalI	GATC	2 cut(s)	66, 588
MboI	GATC	2 cut(s)	64, 586
MboII	GAAGA	3 cut(s)	32, 70, 507
MflI	RGATCY	1 cut(s)	586
MluCI	AATT	5 cut(s)	236, 268, 418, 476, 542
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	3 cut(s)	86, 352, 501
MseI	TTAA	4 cut(s)	338, 366, 525, 537
MslI	CAYNNNNRTG	2 cut(s)	191, 381
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	2 cut(s)	64, 586
NlaIII	CATG	7 cut(s)	34, 109, 116, 196, 263, 380, 399
NmuCI	GTSAC	2 cut(s)	71, 253
NspI	RCATGY	3 cut(s)	34, 109, 196
PaeI	GCATGC	2 cut(s)	34, 196
PciI	ACATGT	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	549
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PscI	ACATGT	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	2 cut(s)	471, 512
RsaNI	GTAC	2 cut(s)	470, 511
RseI	CAYNNNNRTG	2 cut(s)	191, 381
SaqAI	TTAA	4 cut(s)	338, 366, 525, 537
SatI	GCNGC	1 cut(s)	548
Sau3AI	GATC	2 cut(s)	64, 586
Sau96I	GGNCC	1 cut(s)	423
ScaI	AGTACT	1 cut(s)	471
SchI	GAGTC	1 cut(s)	437
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	191, 381
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	2 cut(s)	34, 196
Sse9I	AATT	5 cut(s)	236, 268, 418, 476, 542
SspMI	CTAG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	342, 395
TaaI	ACNGT	2 cut(s)	119, 278
TaqI	TCGA	4 cut(s)	146, 203, 404, 437
TasI	AATT	5 cut(s)	236, 268, 418, 476, 542
TatI	WGTACW	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	4 cut(s)	338, 366, 525, 537
Tru9I	TTAA	4 cut(s)	338, 366, 525, 537
TscAI	CASTG	2 cut(s)	19, 505
TseFI	GTSAC	2 cut(s)	71, 253
TseI	GCWGC	1 cut(s)	547
Tsp45I	GTSAC	2 cut(s)	71, 253
TspDTI	ATGAA	2 cut(s)	32, 365
TspRI	CASTG	2 cut(s)	19, 505
VpaK11BI	GGWCC	1 cut(s)	423
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	3 cut(s)	34, 109, 196
XspI	CTAG	1 cut(s)	312
ZrmI	AGTACT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.