Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017976

Physical Location & Seq

Genomic Coordinates Forward (+)

53874831 .. 53876273

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGATTATTGAGGGATCCCATCTCCTATCATCTCATGATCGCAAACACTTGTCCTTTGATGTTCTACTTCTTCTCCTACCGAGGTTGTCTGCTTCTCATATTTCAATTTATTTTTCTTACAAAGTTGTTCAGTGCATTACTGCTGCAATTGCCTTTGTTGTGATATTGGTCAGCGTTGTGTTTCTAACTACATTTTATGTCCCCTACAAGTTACATGACTGTCGTTGCACAGAAAAAGACTTAAAGTCTACAAAGAATGGCTGCAGTGGTTCTCTTCTCCACAAAGATATTGGCAAGATTCTTCATGTTGCTTCAATAATGATGGCAAGAGATGTTGCTTCACGAGAGTTAGATAGCCCTCATGTTGCCCATGTCATCAATTTTGCCTATCCAAAAAGCATAGATGATTATGTTCCCATGATTGCTCATACTAGTATTGTAGTAGAGTTAATGAAGGAATCAAAGAAGGAGATTCCTAATTGGCTTTCTGATTATGCAGAAAAATCATTGTCTTATGGTGGAGACCAGAGCCAAAGGTATGGTAGCAGTAACTTTGGTGGATATAATAACTTCTGTGGGAGTGAGAATTATTATGGTTCAGGCAATTATGGTTGTGGAGATTCTTCTTTGGGTAAGGTTGTTGCTTCCTACTGTGATACTTCTTATAATGGGGGTGAAAGTGATGATCCGGGTACTGATGGTTCCCGGAAGATTTCCGAAAATGCTCACGAGGACGTCTACAAGTCATTCGTGACTGAGTATCCTGTTGTCTCAACTGAAGATTCCTTTGACCAAGATGATTGGGAGCCCTACTCTAAAATGACAGCTGAAATGGGAGAGAAAGTAATCTCCACAACACCAGTTTTATGTGATGAATGTGCAGCGGGACATGCTCTTTCCATTCCTAAACAAAAGACTGCTCAAGTGCCTCTGTTTTATACTTGTAGAGAAGAGAATCAAATGCTGAATGCAGGTATAATTTTAACTACACCATTTCATAAGCGGTTGACTCCTCCTTATGTTATGGATGAATGGTTGGTTGAAGCAGATATGATCACTAAAGCAAGGCAAGAGAGGAGAATGGTTTTTGCTGAAGTTTTGGCTCAATTCCTTTTTCTTACGTGTTTAAGGCCTGAGGGCATGCCTTATTTTAAGGGGGAGGAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

389

Amino Acids

43.52

Weight (kDa)

5.39

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_C	PF00113	228 - 282	3.8e-11	Enolase, C-terminal TIM barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017976)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30481 FvH4_1g30560 FvH4_c4g00030
pyrus_communis	pycom05g12520 pycom12g01350
rosa_chinensis	RchiOBHm_Chr7g0214251
rosa_multiflora	Rmu_sc0000410.1_g000007 Rmu_sc0001154.1_g000014
rosa_roxburghii	Rroxscaffold_4G00313870 Rroxscaffold_4G00323230 Rroxscaffold_5G00382810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AatII	GACGTC	1 cut(s)	738
Acc36I	ACCTGC	1 cut(s)	962
AccI	GTMKAC	2 cut(s)	248, 738
AciI	CCGC	2 cut(s)	884, 1003
AclWI	GGATC	3 cut(s)	9, 22, 680
AcuI	CTGAAG	2 cut(s)	798, 1113
AcyI	GRCGYC	1 cut(s)	735
AfaI	GTAC	1 cut(s)	694
AflIII	ACRYGT	1 cut(s)	1121
AgsI	TTSAA	3 cut(s)	105, 315, 1043
AhdI	GACNNNNNGTC	1 cut(s)	244
AhlI	ACTAGT	1 cut(s)	431
AluBI	AGCT	1 cut(s)	827
AluI	AGCT	1 cut(s)	827
Alw26I	GTCTC	2 cut(s)	516, 775
AlwI	GGATC	3 cut(s)	9, 22, 680
AoxI	GGCC	1 cut(s)	1130
ApeKI	GCWGC	3 cut(s)	143, 261, 881
AsuC2I	CCSGG	2 cut(s)	690, 706
AsuHPI	GGTGA	1 cut(s)	686
AxyI	CCTNAGG	1 cut(s)	1134
BamHI	GGATCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	810
BauI	CACGAG	2 cut(s)	342, 728
BbvI	GCAGC	3 cut(s)	130, 248, 893
BccI	CCATC	3 cut(s)	27, 316, 692
BciVI	GTATCC	1 cut(s)	771
BclI	TGATCA	1 cut(s)	1053
BcnI	CCSGG	2 cut(s)	690, 706
BcoDI	GTCTC	2 cut(s)	516, 775
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	962
BfuI	GTATCC	1 cut(s)	771
BisI	GCNGC	3 cut(s)	144, 262, 882
BlsI	GCNGC	3 cut(s)	145, 263, 883
Bme1390I	CCNGG	2 cut(s)	690, 706
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmiI	GGNNCC	3 cut(s)	16, 703, 807
BmrFI	CCNGG	2 cut(s)	690, 706
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
BpuEI	CTTGAG	1 cut(s)	906
BpuMI	CCSGG	2 cut(s)	690, 706
BsaAI	YACGTR	1 cut(s)	1122
BsaHI	GRCGYC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	80
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 828, 858
Bse1I	ACTGG	1 cut(s)	860
Bse21I	CCTNAGG	1 cut(s)	1134
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	1033
BseMII	CTCAG	2 cut(s)	747, 1125
BseNI	ACTGG	1 cut(s)	860
BseRI	GAGGAG	2 cut(s)	1002, 1090
BseXI	GCAGC	3 cut(s)	130, 248, 893
BsgI	GTGCAG	1 cut(s)	900
BshFI	GGCC	1 cut(s)	1132
BsiSI	CCGG	2 cut(s)	689, 706
BslFI	GGGAC	2 cut(s)	185, 900
BsmAI	GTCTC	2 cut(s)	516, 775
BsmFI	GGGAC	2 cut(s)	185, 900
BsmI	GAATGC	1 cut(s)	973
BsnI	GGCC	1 cut(s)	1132
Bso31I	GGTCTC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp143I	GATC	4 cut(s)	14, 37, 685, 1053
BspACI	CCGC	2 cut(s)	884, 1003
BspANI	GGCC	1 cut(s)	1132
BspCNI	CTCAG	2 cut(s)	748, 1126
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	16, 703, 807
BspMAI	CTGCAG	1 cut(s)	266
BspMI	ACCTGC	1 cut(s)	962
BspPI	GGATC	3 cut(s)	9, 22, 680
BspTNI	GGTCTC	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	860
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	4 cut(s)	14, 37, 685, 1053
BssNI	GRCGYC	1 cut(s)	735
BssSI	CACGAG	2 cut(s)	342, 728
Bst2BI	CACGAG	2 cut(s)	342, 728
Bst4CI	ACNGT	2 cut(s)	221, 653
Bst6I	CTCTTC	2 cut(s)	279, 945
BstACI	GRCGYC	1 cut(s)	735
BstBAI	YACGTR	1 cut(s)	1122
BstC8I	GCNNGC	1 cut(s)	1142
BstDEI	CTNAG	2 cut(s)	756, 1134
BstF5I	GGATG	1 cut(s)	1033
BstKTI	GATC	4 cut(s)	17, 40, 688, 1056
BstMAI	GTCTC	2 cut(s)	516, 775
BstMBI	GATC	4 cut(s)	14, 37, 685, 1053
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 890
BstNSI	RCATGY	2 cut(s)	893, 1144
BstSCI	CCNGG	2 cut(s)	688, 704
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	130, 248, 893
BstX2I	RGATCY	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	1134
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	1 cut(s)	1132
BtsCI	GGATG	1 cut(s)	1033
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	137, 271
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	1 cut(s)	1142
CciI	TCATGA	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	693
CviAII	CATG	8 cut(s)	35, 215, 305, 362, 371, 418, 890, 1141
CviJI	RGCY	8 cut(s)	261, 357, 484, 531, 808, 827, 1103, 1132
CviKI_1	RGCY	8 cut(s)	261, 357, 484, 531, 808, 827, 1103, 1132
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	2 cut(s)	756, 1134
DpnI	GATC	4 cut(s)	16, 39, 687, 1055
DpnII	GATC	4 cut(s)	14, 37, 685, 1053
DriI	GACNNNNNGTC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	279, 945
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	2 cut(s)	279, 945
Eco147I	AGGCCT	1 cut(s)	1132
Eco24I	GRGCYC	1 cut(s)	810
Eco31I	GGTCTC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	798, 1113
Eco81I	CCTNAGG	1 cut(s)	1134
EcoT38I	GRGCYC	1 cut(s)	810
FaeI	CATG	8 cut(s)	38, 218, 308, 365, 374, 421, 893, 1144
FaqI	GGGAC	2 cut(s)	185, 900
FatI	CATG	8 cut(s)	34, 214, 304, 361, 370, 417, 889, 1140
FauI	CCCGC	1 cut(s)	877
FbaI	TGATCA	1 cut(s)	1053
FblI	GTMKAC	2 cut(s)	248, 738
Fnu4HI	GCNGC	3 cut(s)	144, 262, 882
FokI	GGATG	1 cut(s)	1040
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	3 cut(s)	144, 262, 882
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	3 cut(s)	144, 262, 882
HaeIII	GGCC	1 cut(s)	1132
HapII	CCGG	2 cut(s)	689, 706
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	8 cut(s)	38, 218, 308, 365, 374, 421, 893, 1144
HincII	GTYRAC	1 cut(s)	1008
HindII	GTYRAC	1 cut(s)	1008
HinfI	GANTC	7 cut(s)	298, 458, 472, 620, 782, 955, 1009
HpaII	CCGG	2 cut(s)	689, 706
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	3 cut(s)	249, 739, 1008
Hpy188I	TCNGA	2 cut(s)	490, 718
Hpy188III	TCNNGA	4 cut(s)	35, 342, 728, 751
Hpy8I	GTNNAC	3 cut(s)	249, 739, 1008
HpyAV	CCTTC	2 cut(s)	448, 460
HpyCH4III	ACNGT	2 cut(s)	221, 653
HpyCH4IV	ACGT	2 cut(s)	735, 1121
HpyCH4V	TGCA	7 cut(s)	135, 146, 228, 264, 497, 881, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 890
HpyF3I	CTNAG	2 cut(s)	756, 1134
HpySE526I	ACGT	2 cut(s)	735, 1121
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	8 cut(s)	38, 218, 308, 365, 374, 421, 893, 1144
Ksp22I	TGATCA	1 cut(s)	1053
Kzo9I	GATC	4 cut(s)	14, 37, 685, 1053
LmnI	GCTCC	1 cut(s)	805
LpnPI	CCDG	8 cut(s)	539, 585, 702, 719, 777, 873, 957, 1146
Lsp1109I	GCAGC	3 cut(s)	130, 248, 893
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	2 cut(s)	735, 1121
MaeIII	GTNAC	3 cut(s)	210, 548, 751
MalI	GATC	4 cut(s)	16, 39, 687, 1055
MboI	GATC	4 cut(s)	14, 37, 685, 1053
MboII	GAAGA	7 cut(s)	62, 266, 293, 615, 721, 791, 962
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	8 cut(s)	105, 147, 379, 478, 586, 604, 978, 1106
MlyI	GAGTC	1 cut(s)	1003
MnlI	CCTC	9 cut(s)	4, 75, 369, 724, 939, 1023, 1068, 1129, 1153
MseI	TTAA	5 cut(s)	242, 449, 983, 1127, 1152
MspA1I	CMGCKG	2 cut(s)	827, 884
MspI	CCGG	2 cut(s)	689, 706
MspR9I	CCNGG	2 cut(s)	690, 706
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	973
MwoI	GCNNNNNNNGC	2 cut(s)	149, 890
NciI	CCSGG	2 cut(s)	690, 706
NdeII	GATC	4 cut(s)	14, 37, 685, 1053
NlaIII	CATG	8 cut(s)	38, 218, 308, 365, 374, 421, 893, 1144
NlaIV	GGNNCC	3 cut(s)	16, 703, 807
NmuCI	GTSAC	1 cut(s)	751
NspI	RCATGY	2 cut(s)	893, 1144
PaeI	GCATGC	1 cut(s)	1144
PagI	TCATGA	1 cut(s)	34
PceI	AGGCCT	1 cut(s)	1132
PctI	GAATGC	1 cut(s)	973
PfeI	GAWTC	6 cut(s)	298, 458, 472, 620, 782, 955
PfoI	TCCNGGA	1 cut(s)	704
PkrI	GCNGC	3 cut(s)	145, 263, 883
PleI	GAGTC	1 cut(s)	1003
PpsI	GAGTC	1 cut(s)	1003
Ppu21I	YACGTR	1 cut(s)	1122
PsiI	TTATAA	1 cut(s)	666
PspN4I	GGNNCC	3 cut(s)	16, 703, 807
PsrI	GAACNNNNNNTAC	2 cut(s)	685, 717
PstI	CTGCAG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
SaqAI	TTAA	5 cut(s)	242, 449, 983, 1127, 1152
SatI	GCNGC	3 cut(s)	144, 262, 882
Sau3AI	GATC	4 cut(s)	14, 37, 685, 1053
SchI	GAGTC	1 cut(s)	1003
ScrFI	CCNGG	2 cut(s)	690, 706
SduI	GDGCHC	1 cut(s)	810
SetI	ASST	7 cut(s)	86, 539, 639, 738, 829, 976, 1124
SfcI	CTRYAG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	921
SmoI	CTYRAG	1 cut(s)	921
SpeI	ACTAGT	1 cut(s)	431
SphI	GCATGC	1 cut(s)	1144
Sse9I	AATT	8 cut(s)	105, 147, 379, 478, 586, 604, 978, 1106
SseBI	AGGCCT	1 cut(s)	1132
SsiI	CCGC	2 cut(s)	884, 1003
SspMI	CTAG	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	1132
StyD4I	CCNGG	2 cut(s)	688, 704
TaaI	ACNGT	2 cut(s)	221, 653
TaiI	ACGT	2 cut(s)	738, 1124
TasI	AATT	8 cut(s)	105, 147, 379, 478, 586, 604, 978, 1106
TfiI	GAWTC	6 cut(s)	298, 458, 472, 620, 782, 955
Tru1I	TTAA	5 cut(s)	242, 449, 983, 1127, 1152
Tru9I	TTAA	5 cut(s)	242, 449, 983, 1127, 1152
TscAI	CASTG	2 cut(s)	137, 271
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	3 cut(s)	143, 261, 881
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	5 cut(s)	293, 467, 888, 986, 1044
TspRI	CASTG	2 cut(s)	137, 271
XceI	RCATGY	2 cut(s)	893, 1144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmiI	GTMKAC	2 cut(s)	248, 738
XspI	CTAG	1 cut(s)	432
ZraI	GACGTC	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.