FvH4_2g04310

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015531
Physical Location & Seq
Forward (+)
3356524 .. 3357240
717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04310.t1

Sequence Viewer

Length: 333 bp
ATGAAAATGCAACGAGAAGCGAATAGTAGAACACTAATTTTGGTCCTCTTTCTCGCCATGCTCATCTGTTCTGGCTCGATTCACTCGTGCGACTTCGCTAGCTCTCCTTCGCCTTCACCAGCCTTAGGGATGCCAAGACCGCCTGAGCCATCTAAAGGGATTTTCAGAAAGAAAAGAAGAGGGTCTTTCCCTTCGATTTGTTACTCAAAATGCAACCAGTGCGAGCCTTGTATGCCAGTTCAAGTATCAGTCCGGGCAATGGAATTGGAAGAAAACGAGTACTATCCACAAGTCTGGAAATGTGCTTGTGGTGATAATATATTTTCCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

111

Amino Acids

12.31

Weight (kDa)

8.68

Isoelectric Point (pI)

87.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 60 - 110 3.5e-19 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015531)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04310
malus_domestica MD10G1105400.v1.1
prunus_persica Prupe.8G144300_v2.0.a1
pyrus_communis pycom10g09080
rosa_chinensis RchiOBHm_Chr6g0253751
rosa_laevigata RLG00000014985
rosa_roxburghii Rroxscaffold_7G00211660 Rroxscaffold_7G00211670
rosa_rugosa Rorug05G0546100 Rorug05G0546100
rosa_samantha Rh6AG061800 Rh6BG055300 Rh6CG055300 Rh6DG052900
rosa_wichuraiana Rw6G005480 Rw6G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 3 cut(s) 125, 155, 259
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 108, 323
AsuNHI GCTAGC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 124
BauI CACGAG 1 cut(s) 85
BccI CCATC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 2 cut(s) 99, 331
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 120
BmtI GCTAGC 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 155, 259
Bse1I ACTGG 2 cut(s) 217, 236
Bse21I CCTNAGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 264
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 3 cut(s) 125, 155, 259
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 217, 236
BsiSI CCGG 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 125, 155, 259
BspACI CCGC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 136
BspOI GCTAGC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 2 cut(s) 217, 236
BssSI CACGAG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 100, 224
BstDEI CTNAG 2 cut(s) 124, 144
BstF5I GGATG 1 cut(s) 135
BstMWI GCNNNNNNNGC 3 cut(s) 139, 219, 232
BstSCI CCNGG 1 cut(s) 252
BstXI CCANNNNNNTGG 1 cut(s) 294
Bsu36I CCTNAGG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 100, 224
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 280
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 75, 102, 122, 148, 226
CviKI_1 RGCY 5 cut(s) 75, 102, 122, 148, 226
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 124, 144
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 124
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 233, 320
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FatI CATG 1 cut(s) 57
FokI GGATG 1 cut(s) 142
FspBI CTAG 2 cut(s) 99, 331
HapII CCGG 1 cut(s) 253
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 253
HphI GGTGA 2 cut(s) 108, 323
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 117, 123, 201
HpyCH4V TGCA 2 cut(s) 10, 213
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 219, 232
HpyF3I CTNAG 2 cut(s) 124, 144
Hsp92II CATG 1 cut(s) 61
LpnPI CCDG 7 cut(s) 57, 132, 156, 230, 249, 266, 280
LweI GCATC 1 cut(s) 120
MaeI CTAG 2 cut(s) 99, 331
MaeIII GTNAC 1 cut(s) 200
MboII GAAGA 2 cut(s) 189, 281
MluCI AATT 2 cut(s) 36, 263
MnlI CCTC 2 cut(s) 56, 173
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 139, 219, 232
NciI CCSGG 1 cut(s) 254
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 43
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 43
ScaI AGTACT 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 254
SetI ASST 1 cut(s) 104
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 43
Sse9I AATT 2 cut(s) 36, 263
SsiI CCGC 1 cut(s) 140
SspMI CTAG 2 cut(s) 99, 331
StyD4I CCNGG 1 cut(s) 252
TaqI TCGA 2 cut(s) 77, 194
TasI AATT 2 cut(s) 36, 263
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 1 cut(s) 79
TscAI CASTG 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 43
XspI CTAG 2 cut(s) 99, 331
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.