Rorug05G0546100
ERF Family

Eukaryotic peptide chain release factor subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
73495704 .. 73499173
3470 bp
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UTR
Exon/CDS
Intron
Rorug05G0546100.1

Sequence Viewer

Length: 246 bp
ATGGCTATGACGGTGAAGCAAATGGCCTTTTTTGGAGGTGGATTACCCCTCGTGAACCACCTGGCAAAAATGTGGAGGAGTGGGGAAGTGGTTTTGATACTTGAAGATGACCATGAATTGGTTTCACTTGATATTGTGAGCAAACAGCTTAAAAATTTTGGGATTTCTACATATCAGGGTTGTCATGTTGGCTCGTATGAAGAGAGCCTACTCTTGCTTGACAGGAAGGATGCAATTTCTTACTGA

Protein Analysis

81

Amino Acids

9.06

Weight (kDa)

5.43

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BauI CACGAG 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 91
BshFI GGCC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 1 cut(s) 26
BspANI GGCC 1 cut(s) 26
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 195
BstF5I GGATG 1 cut(s) 235
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 235
CviAII CATG 2 cut(s) 113, 185
CviJI RGCY 5 cut(s) 5, 26, 148, 192, 207
CviKI_1 RGCY 5 cut(s) 5, 26, 148, 192, 207
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 116, 188
FaiI YATR 5 cut(s) 8, 114, 172, 186, 198
FatI CATG 2 cut(s) 112, 184
FokI GGATG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 2 cut(s) 116, 188
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 233
Hsp92II CATG 2 cut(s) 116, 188
LpnPI CCDG 4 cut(s) 47, 74, 161, 208
LweI GCATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 116, 212
MluCI AATT 3 cut(s) 116, 154, 234
MnlI CCTC 3 cut(s) 29, 59, 69
MseI TTAA 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NlaIII CATG 2 cut(s) 116, 188
PflMI CCANNNNNTGG 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 62
SetI ASST 3 cut(s) 40, 63, 150
SfaNI GCATC 1 cut(s) 220
Sse9I AATT 3 cut(s) 116, 154, 234
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 13
TasI AATT 3 cut(s) 116, 154, 234
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 129, 213
Van91I CCANNNNNTGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.