Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Reverse (-)

50494271 .. 50495584

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG283400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTCGGATGGTCAGGAGACTGATAAGAACATTGAGATATGGAAGATTAAGAAGCTGATCAAGGCACTTGAAGCTGCAAGGGGTAATGGCACCAGCATGATTTCTCTCATCATGCCTCCCCGAGATCAAATATCTCGTGTTACTAAGATGCTTGGCGATGAGTTTGGAACTGCTTCAAATATCAAGAGTAGAGTGAATCGTCAATCCGTTCTAGGGGCAATTACATCTGCTCAGCAGCGGCTCAAGCTTTACAACAAGGTTCCTCCAAATGGGCTTGTTCTGTATACCGGAACAATTGTTACTGATGATGGGAAGGAAAAGAAGGTGACAATTGATTTTGAGCCTTTCAGGCCTATTAATGCGTCTCTTTACCTCTGCGATAACAAGTTTCATATTGAAGCTCTGAATGAGCTCTTGGAATCTGACGACAAATTTGGCTTCATTGTCATGGATGGTAATGGAACTCTTTTTGGGACACTAAGTGGAAACACGAGAGAGGTGCTTCATAAATTTAGTGTTGACCTGCCAAAGAAACACGGAAGAGGAGGACAATCAGCTCTTCGTTTTGCTCGTCTTCGAATGGAGAAGCGTCACAACTATGTTAGGAAGACAGCAGAGCTTGCCACACAGTTCTATATTAATCCTGCCACCAGCCAGCCGAATGTTTCAGGATTAATACTTGCTGGATCAGCTGACTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGTCTGCAGGCCAAAATTCTGAATGTGGTGGATGTTTCTTATGGAGGAGAGAATGGCTTTAATCAGGCTATTGAATTGTCAGCTGAGATCCTGTCCAATGTGAAGTTTATACAGGAGAAGAAGTTGATTGGAAAATACTTTGAGGAGATTAGTCAGGATACTGGGAAGTATGTTTTTGGTGTAGATGACACACTTAAAGCTTTGGAGATGGGTGCTGTTGAGATTCTTATTGTGTGGGAAAGTCTGGACATCAATAGGTATGTGCTAAAACATAGCGTTACTGGGGAGATCATTGTGAAGCATTTGAACAAGGAGCAGGAAAACAATCAGAGCAACTATCGTGATCCTGAGACCAATGCAGAATTAGAGGTTCAGGAAAAGATGTCACTGTTGGAGTGGTTTGCTAATGAGTACAAGCGGTTTGGGTGTTCTCTTGAGTTTGTAACTAACAAATCACAAGAAGGGTCACAGTTCTGCCGAGGTTTTGGAGGGATTGGAGGAATTCTCCGCTACCAGCTTGACATGAGGTCTTTTGATGAGTTCTCTGATGATGGTGAAGTGTATGATGATTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

437

Amino Acids

49.23

Weight (kDa)

5.46

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	17 - 139	1.7e-52	eRF1 domain 1
eRF1_2	PF03464	144 - 277	1.3e-42	eRF1 domain 2
eRF1_3	PF03465	281 - 418	7.9e-33	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	3 cut(s)	238, 1153, 1243
AclWI	GGATC	4 cut(s)	694, 725, 817, 1073
AcsI	RAATTY	4 cut(s)	431, 509, 750, 1236
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	1148
AfiI	CCNNNNNNNGG	2 cut(s)	213, 269
AgsI	TTSAA	6 cut(s)	71, 177, 398, 700, 809, 1042
AhdI	GACNNNNNGTC	1 cut(s)	1261
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	3 cut(s)	11, 369, 1079
AlwI	GGATC	4 cut(s)	694, 725, 817, 1073
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	350, 744
ApeKI	GCWGC	2 cut(s)	74, 235
ApoI	RAATTY	4 cut(s)	431, 509, 750, 1236
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AseI	ATTAAT	3 cut(s)	357, 639, 674
Asp700I	GAANNNNTTC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	337, 1301
AsuII	TTCGAA	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	414
BauI	CACGAG	2 cut(s)	135, 490
BbsI	GAAGAC	2 cut(s)	566, 614
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	61, 247
BccI	CCATC	5 cut(s)	2, 302, 446, 937, 1280
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	3 cut(s)	11, 369, 1079
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	886
BglI	GCCNNNNNGGC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	75, 236, 239
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	3 cut(s)	76, 237, 240
BmeRI	GACNNNNNGTC	1 cut(s)	1261
BmeT110I	CYCGRG	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	91, 261
BmrI	ACTGGG	2 cut(s)	906, 1026
BmsI	GCATC	1 cut(s)	138
BmuI	ACTGGG	2 cut(s)	906, 1026
BpiI	GAAGAC	2 cut(s)	566, 614
BplI	GAGNNNNNCTC	2 cut(s)	1224, 1256
Bpu1102I	GCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	577
BpuEI	CTTGAG	2 cut(s)	227, 1190
BsaI	GGTCTC	1 cut(s)	1079
BsaJI	CCNNGG	1 cut(s)	1213
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 269
Bse1I	ACTGG	2 cut(s)	901, 1021
BseDI	CCNNGG	1 cut(s)	1213
BseGI	GGATG	3 cut(s)	13, 457, 772
BseLI	CCNNNNNNNGG	2 cut(s)	213, 269
BseMII	CTCAG	4 cut(s)	245, 696, 810, 1074
BseNI	ACTGG	2 cut(s)	901, 1021
BseRI	GAGGAG	3 cut(s)	558, 795, 893
BseXI	GCAGC	2 cut(s)	61, 247
BshFI	GGCC	2 cut(s)	352, 746
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	213, 269
BsmAI	GTCTC	3 cut(s)	11, 369, 1079
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	352, 746
Bso31I	GGTCTC	1 cut(s)	1079
BsoBI	CYCGRG	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	7 cut(s)	57, 124, 686, 730, 822, 1023, 1078
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	3 cut(s)	238, 1153, 1243
BspANI	GGCC	2 cut(s)	352, 746
BspCNI	CTCAG	4 cut(s)	244, 697, 811, 1075
BspLI	GGNNCC	2 cut(s)	91, 261
BspMAI	CTGCAG	1 cut(s)	744
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	4 cut(s)	694, 725, 817, 1073
BspQI	GCTCTTC	1 cut(s)	564
BspT104I	TTCGAA	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	1079
BsrI	ACTGG	2 cut(s)	901, 1021
BssECI	CCNNGG	1 cut(s)	1213
BssMI	GATC	7 cut(s)	57, 124, 686, 730, 822, 1023, 1078
BssNAI	GTATAC	1 cut(s)	285
BssSI	CACGAG	2 cut(s)	135, 490
Bst1107I	GTATAC	1 cut(s)	285
Bst2BI	CACGAG	2 cut(s)	135, 490
Bst4CI	ACNGT	3 cut(s)	630, 1125, 1206
Bst6I	CTCTTC	2 cut(s)	535, 564
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBI	TTCGAA	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	621, 656, 744
BstDEI	CTNAG	7 cut(s)	144, 231, 479, 705, 710, 819, 1083
BstF5I	GGATG	3 cut(s)	13, 457, 772
BstKTI	GATC	7 cut(s)	60, 127, 689, 733, 825, 1026, 1081
BstMAI	GTCTC	3 cut(s)	11, 369, 1079
BstMBI	GATC	7 cut(s)	57, 124, 686, 730, 822, 1023, 1078
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 244, 349, 620, 689
BstSFI	CTRYAG	1 cut(s)	740
BstV1I	GCAGC	2 cut(s)	61, 247
BstV2I	GAAGAC	2 cut(s)	566, 614
BstX2I	RGATCY	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	822
BstZ17I	GTATAC	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	2 cut(s)	352, 746
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	13, 457, 772
BtsIMutI	CAGTG	1 cut(s)	1121
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	3 cut(s)	621, 656, 744
CseI	GACGC	2 cut(s)	351, 578
Csp6I	GTAC	1 cut(s)	1147
CviAII	CATG	4 cut(s)	97, 112, 448, 1258
CviQI	GTAC	1 cut(s)	1147
DdeI	CTNAG	7 cut(s)	144, 231, 479, 705, 710, 819, 1083
DpnI	GATC	7 cut(s)	59, 126, 688, 732, 824, 1025, 1080
DpnII	GATC	7 cut(s)	57, 124, 686, 730, 822, 1023, 1078
DraIII	CACNNNGTG	1 cut(s)	482
DriI	GACNNNNNGTC	1 cut(s)	1261
Eam1104I	CTCTTC	2 cut(s)	535, 564
Eam1105I	GACNNNNNGTC	1 cut(s)	1261
EarI	CTCTTC	2 cut(s)	535, 564
Ecl136II	GAGCTC	1 cut(s)	412
Eco147I	AGGCCT	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	1079
Eco53kI	GAGCTC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	1236
EcoT38I	GRGCYC	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	4 cut(s)	100, 115, 451, 1261
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	4 cut(s)	96, 111, 447, 1257
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	3 cut(s)	75, 236, 239
FokI	GGATG	3 cut(s)	20, 464, 779
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	3 cut(s)	75, 236, 239
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	3 cut(s)	75, 236, 239
HaeIII	GGCC	2 cut(s)	352, 746
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	2 cut(s)	351, 578
Hin1II	CATG	4 cut(s)	100, 115, 451, 1261
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	2 cut(s)	245, 933
HinfI	GANTC	4 cut(s)	196, 419, 958, 1304
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	337, 1301
Hpy166II	GTNNAC	2 cut(s)	285, 520
Hpy188I	TCNGA	8 cut(s)	7, 405, 424, 721, 756, 1065, 1282, 1309
Hpy188III	TCNNGA	9 cut(s)	14, 184, 669, 890, 980, 1076, 1082, 1109, 1169
Hpy8I	GTNNAC	2 cut(s)	285, 520
HpyAV	CCTTC	3 cut(s)	307, 316, 1190
HpyCH4III	ACNGT	3 cut(s)	630, 1125, 1206
HpyCH4V	TGCA	3 cut(s)	77, 742, 1094
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 244, 349, 620, 689
HpyF3I	CTNAG	7 cut(s)	144, 231, 479, 705, 710, 819, 1083
Hsp92II	CATG	4 cut(s)	100, 115, 451, 1261
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	7 cut(s)	57, 124, 686, 730, 822, 1023, 1078
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	1048
Lsp1109I	GCAGC	2 cut(s)	61, 247
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	8 cut(s)	139, 298, 325, 590, 1012, 1119, 1177, 1200
MalI	GATC	7 cut(s)	59, 126, 688, 732, 824, 1025, 1080
MboI	GATC	7 cut(s)	57, 124, 686, 730, 822, 1023, 1078
MboII	GAAGA	6 cut(s)	55, 551, 552, 566, 619, 865
MfeI	CAATTG	2 cut(s)	294, 330
MflI	RGATCY	1 cut(s)	822
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	9 cut(s)	219, 294, 330, 431, 509, 750, 809, 1097, 1236
MmeI	TCCRAC	1 cut(s)	1107
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	6 cut(s)	48, 357, 639, 674, 795, 930
MslI	CAYNNNNRTG	3 cut(s)	95, 446, 597
MspA1I	CMGCKG	3 cut(s)	238, 692, 818
MspI	CCGG	1 cut(s)	288
MunI	CAATTG	2 cut(s)	294, 330
MwoI	GCNNNNNNNGC	5 cut(s)	71, 244, 349, 620, 689
NdeII	GATC	7 cut(s)	57, 124, 686, 730, 822, 1023, 1078
NlaIII	CATG	4 cut(s)	100, 115, 451, 1261
NlaIV	GGNNCC	2 cut(s)	91, 261
NmeAIII	GCCGAG	1 cut(s)	1238
NmuCI	GTSAC	4 cut(s)	325, 590, 1119, 1200
NspV	TTCGAA	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	4 cut(s)	196, 419, 958, 1304
PkrI	GCNGC	3 cut(s)	76, 237, 240
PshBI	ATTAAT	3 cut(s)	357, 639, 674
Psp124BI	GAGCTC	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	91, 261
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	822
PvuII	CAGCTG	2 cut(s)	692, 818
RsaI	GTAC	1 cut(s)	1148
RsaNI	GTAC	1 cut(s)	1147
RseI	CAYNNNNRTG	3 cut(s)	95, 446, 597
SacI	GAGCTC	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	6 cut(s)	48, 357, 639, 674, 795, 930
SatI	GCNGC	3 cut(s)	75, 236, 239
Sau3AI	GATC	7 cut(s)	57, 124, 686, 730, 822, 1023, 1078
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	740
SfuI	TTCGAA	1 cut(s)	577
SmiMI	CAYNNNNRTG	3 cut(s)	95, 446, 597
SmlI	CTYRAG	2 cut(s)	242, 1169
SmoI	CTYRAG	2 cut(s)	242, 1169
Sse9I	AATT	9 cut(s)	219, 294, 330, 431, 509, 750, 809, 1097, 1236
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	238, 1153, 1243
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	630, 1125, 1206
TaqI	TCGA	1 cut(s)	577
TasI	AATT	9 cut(s)	219, 294, 330, 431, 509, 750, 809, 1097, 1236
TatI	WGTACW	1 cut(s)	1146
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	4 cut(s)	196, 419, 958, 1304
Tru1I	TTAA	6 cut(s)	48, 357, 639, 674, 795, 930
Tru9I	TTAA	6 cut(s)	48, 357, 639, 674, 795, 930
TscAI	CASTG	1 cut(s)	1128
TseFI	GTSAC	4 cut(s)	325, 590, 1119, 1200
TseI	GCWGC	2 cut(s)	74, 235
Tsp45I	GTSAC	4 cut(s)	325, 590, 1119, 1200
TspDTI	ATGAA	3 cut(s)	380, 430, 494
TspGWI	ACGGA	2 cut(s)	196, 552
TspRI	CASTG	1 cut(s)	1128
VspI	ATTAAT	3 cut(s)	357, 639, 674
XapI	RAATTY	4 cut(s)	431, 509, 750, 1236
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.