Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

8757813 .. 8759029

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGATTTCTCTTATCATCCCTCCCCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGCGAAGAGTTTGGAACTGCTTCAAATATTAAGAGTAGGGTGAATCGTCAATCCGTTCTAGGGGCCATTACGTCTGCTCAGGAGCGGCTCAAGCGTTACAATAAGGTTCCTCCAAATGGGCTTGCTCTATATACAGGAACAATTACAGTTGCTATTGAGCCTTTCAGGCCTATTAATGCGTCTCTTTACCTCTGTGATAACAAGTTTCATATTGAAGCTCTGAATGAACTCTTGGAATCTGATGACAAATTTGGTTTCATTGTCATGGATGGTAATGGAACTCTTTTTGGGACACTAAGTGGCAACACAAGAGAGGTGCTTCATAAATTTAGTGTTGACCTGCCAAAGAAACACGGAAGAGGAGGACAGTCAGCTCTTCGTTTTGCTCGTCTTCGAATGGAGAAGCGTCACAACTATGTTAGGAAGACAGCAGAGCTTGCCACACAGTTTTATATTAATCCTGCCTCCAGCCAGCCTAATGTTTCAGGATTAATACTTGCTGGATCAGCTGACTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGTCTGCAGGCCAAGATTCTGAATGTGGTGGACGTTTCTTATGGAGGAGAGAATGGCTTTAATCAGGCTATTGAATTGTCAGTAGAGATCCTGTCCAATGTGAAGTTCATACAGGAGAAGAAGTTGATTGGAAAATACTTTGAGGAGATTAGTCAGGATACTGGCAAGTATGTTTTTGGTGTCGATGACACACTCAAAGCTTTGGAGATGGGCGCTGTTGAGATACTTATTGTGTGGGAAAGTCTGGACATCAATAGGTATGAGCTAAAACATAGCAGTACTGAGGAGATCATTGTGAAGCATTTGAACAAGGAGCAGGAGAACAATCAGAGCAACTTTCGTGATGCTGAGACCAATGCAGAATTAGAGGTTCAGGACAAGATGTCACTATTGGAGTGGTTTGCTAATGAGTACAGGCGGTTTGGGTGTTCTCTTGAGTTTGTGACCAACAAATCACAAGAGGGGTCACAGTTCTGCCGAGGCTTTGGAGGGATTGGAGGAATTCTCCGGTACCAGCTTGACATGAGGTCTTTCGATGAGTTTTCTGACGATGGTGAAGTTTATGATGATTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

395

Amino Acids

44.6

Weight (kDa)

5.28

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	1 - 97	3.5e-35	eRF1 domain 1
eRF1_2	PF03464	102 - 235	4.1e-42	eRF1 domain 2
eRF1_3	PF03465	239 - 376	1.4e-32	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	1119
AccB1I	GGYRCC	1 cut(s)	1119
AccBSI	CCGCTC	1 cut(s)	142
AciI	CCGC	2 cut(s)	142, 1027
AclWI	GGATC	3 cut(s)	568, 599, 691
AcsI	RAATTY	3 cut(s)	305, 383, 1110
AdeI	CACNNNGTG	1 cut(s)	356
AfaI	GTAC	3 cut(s)	889, 1022, 1121
AfiI	CCNNNNNNNGG	2 cut(s)	117, 173
AgsI	TTSAA	5 cut(s)	81, 272, 574, 683, 916
AhdI	GACNNNNNGTC	2 cut(s)	991, 1135
AjuI	GAANNNNNNNTTGG	4 cut(s)	272, 304, 698, 730
AluBI	AGCT	8 cut(s)	275, 431, 493, 566, 583, 809, 874, 1126
AluI	AGCT	8 cut(s)	275, 431, 493, 566, 583, 809, 874, 1126
Alw26I	GTCTC	2 cut(s)	243, 953
AlwI	GGATC	3 cut(s)	568, 599, 691
AoxI	GGCC	3 cut(s)	120, 224, 618
ApoI	RAATTY	3 cut(s)	305, 383, 1110
AseI	ATTAAT	3 cut(s)	231, 513, 548
Asp700I	GAANNNNTTC	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	1119
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	109, 1175
AsuII	TTCGAA	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	1119
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	2 cut(s)	440, 488
BccI	CCATC	3 cut(s)	320, 811, 1154
BciVI	GTATCC	1 cut(s)	760
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	243, 953
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	614
BfoI	RGCGCY	1 cut(s)	825
BfuAI	ACCTGC	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	760
BglI	GCCNNNNNGGC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmcAI	AGTACT	1 cut(s)	889
BmeRI	GACNNNNNGTC	2 cut(s)	991, 1135
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	3 cut(s)	121, 165, 1121
BmsI	GCATC	2 cut(s)	42, 943
BpiI	GAAGAC	2 cut(s)	440, 488
BplI	GAGNNNNNCTC	2 cut(s)	1098, 1130
BpmI	CTGGAG	1 cut(s)	508
Bpu10I	CCTNAGC	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	131, 1064
BsaI	GGTCTC	1 cut(s)	953
BsaJI	CCNNGG	1 cut(s)	1087
BsaWI	WCCGGW	1 cut(s)	1116
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 173
Bse1I	ACTGG	1 cut(s)	775
BseDI	CCNNGG	1 cut(s)	1087
BseGI	GGATG	2 cut(s)	15, 331
BseLI	CCNNNNNNNGG	2 cut(s)	117, 173
BseMII	CTCAG	4 cut(s)	149, 570, 882, 948
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	4 cut(s)	432, 669, 767, 908
BshFI	GGCC	3 cut(s)	122, 226, 620
BshNI	GGYRCC	1 cut(s)	1119
BsiSI	CCGG	1 cut(s)	1117
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	117, 173
BsmAI	GTCTC	2 cut(s)	243, 953
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	122, 226, 620
Bso31I	GGTCTC	1 cut(s)	953
Bsp119I	TTCGAA	1 cut(s)	451
Bsp143I	GATC	5 cut(s)	28, 560, 604, 696, 897
BspACI	CCGC	2 cut(s)	142, 1027
BspANI	GGCC	3 cut(s)	122, 226, 620
BspCNI	CTCAG	4 cut(s)	148, 571, 883, 949
BspLI	GGNNCC	3 cut(s)	121, 165, 1121
BspMAI	CTGCAG	1 cut(s)	618
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	568, 599, 691
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	451
BspT107I	GGYRCC	1 cut(s)	1119
BspTNI	GGTCTC	1 cut(s)	953
BsrBI	CCGCTC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	1 cut(s)	1087
BssMI	GATC	5 cut(s)	28, 560, 604, 696, 897
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	205, 426, 504, 1080
Bst6I	CTCTTC	3 cut(s)	57, 409, 438
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	4 cut(s)	180, 495, 530, 618
BstDEI	CTNAG	7 cut(s)	48, 135, 353, 579, 584, 891, 957
BstF5I	GGATG	2 cut(s)	15, 331
BstH2I	RGCGCY	1 cut(s)	825
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	5 cut(s)	31, 563, 607, 699, 900
BstMAI	GTCTC	2 cut(s)	243, 953
BstMBI	GATC	5 cut(s)	28, 560, 604, 696, 897
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 223, 494, 563
BstSFI	CTRYAG	1 cut(s)	614
BstV2I	GAAGAC	2 cut(s)	440, 488
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	760
BsuRI	GGCC	3 cut(s)	122, 226, 620
BtsCI	GGATG	2 cut(s)	15, 331
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	4 cut(s)	180, 495, 530, 618
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	2 cut(s)	225, 452
Csp6I	GTAC	3 cut(s)	888, 1021, 1120
CviAII	CATG	2 cut(s)	322, 1132
CviQI	GTAC	3 cut(s)	888, 1021, 1120
DdeI	CTNAG	7 cut(s)	48, 135, 353, 579, 584, 891, 957
DpnI	GATC	5 cut(s)	30, 562, 606, 698, 899
DpnII	GATC	5 cut(s)	28, 560, 604, 696, 897
DraIII	CACNNNGTG	1 cut(s)	356
DriI	GACNNNNNGTC	2 cut(s)	991, 1135
Eam1104I	CTCTTC	3 cut(s)	57, 409, 438
Eam1105I	GACNNNNNGTC	2 cut(s)	991, 1135
EarI	CTCTTC	3 cut(s)	57, 409, 438
Eco147I	AGGCCT	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	1110
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	2 cut(s)	325, 1135
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	2 cut(s)	321, 1131
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	2 cut(s)	2, 338
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	825
HaeIII	GGCC	3 cut(s)	122, 226, 620
HapII	CCGG	1 cut(s)	1117
HgaI	GACGC	2 cut(s)	225, 452
HhaI	GCGC	1 cut(s)	824
Hin1II	CATG	2 cut(s)	325, 1135
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	807
HinfI	GANTC	4 cut(s)	100, 293, 625, 1178
HpaII	CCGG	1 cut(s)	1117
HphI	GGTGA	2 cut(s)	109, 1175
Hpy166II	GTNNAC	2 cut(s)	394, 640
Hpy188I	TCNGA	7 cut(s)	279, 298, 595, 630, 939, 1156, 1183
Hpy188III	TCNNGA	7 cut(s)	137, 543, 764, 854, 950, 983, 1043
Hpy8I	GTNNAC	2 cut(s)	394, 640
HpyCH4III	ACNGT	4 cut(s)	205, 426, 504, 1080
HpyCH4IV	ACGT	2 cut(s)	128, 642
HpyCH4V	TGCA	2 cut(s)	616, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 223, 494, 563
HpyF3I	CTNAG	7 cut(s)	48, 135, 353, 579, 584, 891, 957
HpySE526I	ACGT	2 cut(s)	128, 642
Hsp92II	CATG	2 cut(s)	325, 1135
HspAI	GCGC	1 cut(s)	822
KpnI	GGTACC	1 cut(s)	1123
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	28, 560, 604, 696, 897
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	139, 922
LweI	GCATC	2 cut(s)	42, 943
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	2 cut(s)	128, 642
MaeIII	GTNAC	6 cut(s)	43, 152, 464, 993, 1051, 1074
MalI	GATC	5 cut(s)	30, 562, 606, 698, 899
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	5 cut(s)	28, 560, 604, 696, 897
MboII	GAAGA	6 cut(s)	74, 425, 426, 440, 493, 739
MflI	RGATCY	1 cut(s)	696
MluCI	AATT	6 cut(s)	198, 305, 383, 683, 971, 1110
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	5 cut(s)	87, 231, 513, 548, 669
MslI	CAYNNNNRTG	2 cut(s)	320, 471
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	1 cut(s)	1117
MwoI	GCNNNNNNNGC	4 cut(s)	148, 223, 494, 563
NdeII	GATC	5 cut(s)	28, 560, 604, 696, 897
NlaIII	CATG	2 cut(s)	325, 1135
NlaIV	GGNNCC	3 cut(s)	121, 165, 1121
NmeAIII	GCCGAG	1 cut(s)	1112
NmuCI	GTSAC	4 cut(s)	464, 993, 1051, 1074
NspV	TTCGAA	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	4 cut(s)	100, 293, 625, 1178
PkrI	GCNGC	1 cut(s)	144
PshBI	ATTAAT	3 cut(s)	231, 513, 548
PspN4I	GGNNCC	3 cut(s)	121, 165, 1121
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	618
PsuI	RGATCY	1 cut(s)	696
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	889, 1022, 1121
RsaNI	GTAC	3 cut(s)	888, 1021, 1120
RseI	CAYNNNNRTG	2 cut(s)	320, 471
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	87, 231, 513, 548, 669
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	5 cut(s)	28, 560, 604, 696, 897
Sau96I	GGNCC	1 cut(s)	120
ScaI	AGTACT	1 cut(s)	889
SfaNI	GCATC	2 cut(s)	42, 943
SfcI	CTRYAG	1 cut(s)	614
SfuI	TTCGAA	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	320, 471
SmlI	CTYRAG	2 cut(s)	146, 1043
SmoI	CTYRAG	2 cut(s)	146, 1043
Sse9I	AATT	6 cut(s)	198, 305, 383, 683, 971, 1110
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	142, 1027
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	226
TaaI	ACNGT	4 cut(s)	205, 426, 504, 1080
TaiI	ACGT	2 cut(s)	131, 645
TaqI	TCGA	3 cut(s)	451, 792, 1143
TasI	AATT	6 cut(s)	198, 305, 383, 683, 971, 1110
TatI	WGTACW	2 cut(s)	887, 1020
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	4 cut(s)	100, 293, 625, 1178
Tru1I	TTAA	5 cut(s)	87, 231, 513, 548, 669
Tru9I	TTAA	5 cut(s)	87, 231, 513, 548, 669
TseFI	GTSAC	4 cut(s)	464, 993, 1051, 1074
Tsp45I	GTSAC	4 cut(s)	464, 993, 1051, 1074
TspDTI	ATGAA	5 cut(s)	254, 297, 304, 368, 706
TspGWI	ACGGA	2 cut(s)	100, 426
VspI	ATTAAT	3 cut(s)	231, 513, 548
XapI	RAATTY	3 cut(s)	305, 383, 1110
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.