Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

9788231 .. 9790451

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26618.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCAGACCAAGAATCAGATAAGAACATTGAGATTTGGAAGATTAAGAAGCTAATCAAAGGACTTGAAACCGCAAGAGGTAATGGAACAAGTATGATCTCTCTTATAATGCCTCCTAGAGATCAAGTAGCTCGTGTCACTAAGATGCTTGCTGATGAATACGGAACCGCCTCAAACATCAAGAGTCGAGTGAATCGTCAATCTGTTTTATCTGCCATTACTTCTGCTCAACAAAGATTGAAGCTTTACAACAAAGTTCCTCCGAATGGTCTTGTTCTCTATACTGGAACCATTGTTACTGATGATGGTAAAGAGAAGAAAGTGACGATTGATTTCGAGCCTTTTAAACCGATTAATGCTTCGTTGTATTTGTGTGACAATAAGTTCCACACCGAGCCTTTGAATGAGCTTTTGGAGTCTGATGATAAGTTTGGTTTCATTGTTATGGATGGAAATGGAACTTTGTTTGGTACTTTGAGTGGGAATACAAGAGAGGTTCTTCATAAGTTCACTGTCGATCTTCCGAAAAAGCACGGAAGAGGAGGACAATCTGCGTTGCGATTTGCTCGTCTTAGGATGGAGAAGAGACATAACTATGTGAGGAAAACCGCGGAGCTTGCCACTCAGTTTTACATTAATCCAGCTACGAGTCAGCCTAATGTCTCTGGTCTTATACTTGCTGGTTCAGCGGATTTTAAGACCGAGCTAAGTCAATCAGAACTGTTTGATCCTCGTCTTCAAGCTAAGATATTGAATGTGGTTGATGTTTCTTACGGAGGAGAGAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATTCTATCTAATGTGAAGTTCATACAAGAAAAGAAATTGATTGGGAAGTACTTTGAGGAGATTAGTCAAGACACTGGGAAATATGTTTTCGGTGTTGAAGATACTTTAAAGGCTCTGGAAATGGGTGCTGTTGAGACTCTTATAGTGTGGGAGAATCTAGATATTAATAGGTATGAGTTAAAGAACAACACGACCGGAGAAATCGTGATTAAGCATTTGGGAAAGGATCAAGAGAACAACCAAAGCAATTTCCATGATGCAGAGACTAATGCAGAGTTAGAAGTTCAGGAGAAGATGCCTCTGCTTGAATGGTTTGCTAACGAATATAAACGTTTTGGTTGTACACTTGAGTTTGTGACTAACAAGTCCCAAGAAGGATCACAATTTTGCAGAGGCTTTGGCGGTATTGGTGGATTGTTGCGGTACCAGCTTGATATGAGGACATTCGATGAATTATCCGATGGTGAAGTTTATGAAGACTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

435

Amino Acids

49.01

Weight (kDa)

5.38

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	16 - 138	1.9e-53	eRF1 domain 1
eRF1_2	PF03464	143 - 276	3.5e-42	eRF1 domain 2
eRF1_3	PF03465	280 - 417	7e-34	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AasI	GACNNNNNNGTC	1 cut(s)	1183
Acc65I	GGTACC	1 cut(s)	1242
AccB1I	GGYRCC	1 cut(s)	1242
AccII	CGCG	1 cut(s)	611
AciI	CCGC	7 cut(s)	72, 168, 609, 611, 689, 1221, 1240
AclI	AACGTT	1 cut(s)	1150
AclWI	GGATC	3 cut(s)	722, 1053, 1204
AfaI	GTAC	4 cut(s)	472, 869, 1162, 1244
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	8 cut(s)	68, 241, 403, 740, 754, 793, 917, 1127
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
Alw26I	GTCTC	4 cut(s)	580, 667, 947, 1076
AlwI	GGATC	3 cut(s)	722, 1053, 1204
AseI	ATTAAT	3 cut(s)	354, 636, 984
Asp700I	GAANNNNTTC	1 cut(s)	788
Asp718I	GGTACC	1 cut(s)	1242
AsuHPI	GGTGA	1 cut(s)	1295
BanI	GGYRCC	1 cut(s)	1242
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	2 cut(s)	728, 1302
BccI	CCATC	4 cut(s)	299, 443, 571, 1274
BcoDI	GTCTC	4 cut(s)	580, 667, 947, 1076
BfaI	CTAG	2 cut(s)	117, 977
BmcAI	AGTACT	1 cut(s)	869
BmiI	GGNNCC	3 cut(s)	166, 289, 1244
BmrI	ACTGGG	1 cut(s)	903
BmsI	GCATC	3 cut(s)	135, 1066, 1104
BmuI	ACTGGG	1 cut(s)	903
BpiI	GAAGAC	2 cut(s)	728, 1302
BpuEI	CTTGAG	1 cut(s)	1187
BsaJI	CCNNGG	1 cut(s)	609
BsaWI	WCCGGW	1 cut(s)	1013
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	289, 898
BseDI	CCNNGG	1 cut(s)	609
BseGI	GGATG	2 cut(s)	454, 582
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	638, 807
BseNI	ACTGG	2 cut(s)	289, 898
BseRI	GAGGAG	3 cut(s)	555, 792, 890
Bsh1236I	CGCG	1 cut(s)	611
Bsh1285I	CGRYCG	1 cut(s)	1014
BshNI	GGYRCC	1 cut(s)	1242
BsiEI	CGRYCG	1 cut(s)	1014
BsiSI	CCGG	1 cut(s)	1014
BslFI	GGGAC	1 cut(s)	1171
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	4 cut(s)	580, 667, 947, 1076
BsmFI	GGGAC	1 cut(s)	1171
Bsp1407I	TGTACA	1 cut(s)	1160
Bsp143I	GATC	6 cut(s)	96, 121, 517, 727, 1045, 1196
BspACI	CCGC	7 cut(s)	72, 168, 609, 611, 689, 1221, 1240
BspCNI	CTCAG	2 cut(s)	637, 808
BspFNI	CGCG	1 cut(s)	611
BspLI	GGNNCC	3 cut(s)	166, 289, 1244
BspPI	GGATC	3 cut(s)	722, 1053, 1204
BspT107I	GGYRCC	1 cut(s)	1242
BsrGI	TGTACA	1 cut(s)	1160
BsrI	ACTGG	2 cut(s)	289, 898
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	6 cut(s)	96, 121, 517, 727, 1045, 1196
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	514, 723
Bst6I	CTCTTC	2 cut(s)	532, 578
BstAUI	TGTACA	1 cut(s)	1160
BstC8I	GCNNGC	2 cut(s)	150, 618
BstDEI	CTNAG	7 cut(s)	141, 572, 624, 707, 744, 816, 1300
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	454, 582
BstFNI	CGCG	1 cut(s)	611
BstKTI	GATC	6 cut(s)	99, 124, 520, 730, 1048, 1199
BstMAI	GTCTC	4 cut(s)	580, 667, 947, 1076
BstMBI	GATC	6 cut(s)	96, 121, 517, 727, 1045, 1196
BstMCI	CGRYCG	1 cut(s)	1014
BstMWI	GCNNNNNNNGC	3 cut(s)	617, 686, 1246
BstUI	CGCG	1 cut(s)	611
BstV2I	GAAGAC	2 cut(s)	728, 1302
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	454, 582
BtsIMutI	CAGTG	2 cut(s)	510, 891
Cac8I	GCNNGC	2 cut(s)	150, 618
Cfr42I	CCGCGG	1 cut(s)	612
Csp6I	GTAC	4 cut(s)	471, 868, 1161, 1243
CviAII	CATG	1 cut(s)	1073
CviQI	GTAC	4 cut(s)	471, 868, 1161, 1243
DdeI	CTNAG	7 cut(s)	141, 572, 624, 707, 744, 816, 1300
DpnI	GATC	6 cut(s)	98, 123, 519, 729, 1047, 1198
DpnII	GATC	6 cut(s)	96, 121, 517, 727, 1045, 1196
DraI	TTTAAA	2 cut(s)	346, 927
DrdI	GACNNNNNNGTC	1 cut(s)	1183
DseDI	GACNNNNNNGTC	1 cut(s)	1183
Eam1104I	CTCTTC	2 cut(s)	532, 578
EarI	CTCTTC	2 cut(s)	532, 578
FaeI	CATG	1 cut(s)	1076
FaqI	GGGAC	1 cut(s)	1171
FatI	CATG	1 cut(s)	1072
FokI	GGATG	2 cut(s)	461, 589
FspBI	CTAG	2 cut(s)	117, 977
HapII	CCGG	1 cut(s)	1014
Hin1II	CATG	1 cut(s)	1076
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	9 cut(s)	14, 184, 193, 416, 649, 820, 955, 973, 1298
HpaII	CCGG	1 cut(s)	1014
HphI	GGTGA	1 cut(s)	1295
Hpy166II	GTNNAC	2 cut(s)	510, 1163
Hpy188I	TCNGA	7 cut(s)	19, 264, 421, 525, 718, 1279, 1303
Hpy188III	TCNNGA	7 cut(s)	181, 887, 935, 977, 1024, 1049, 1106
Hpy8I	GTNNAC	2 cut(s)	510, 1163
HpyAV	CCTTC	1 cut(s)	1187
HpyCH4III	ACNGT	2 cut(s)	514, 723
HpyCH4IV	ACGT	1 cut(s)	1150
HpyCH4V	TGCA	3 cut(s)	1079, 1091, 1209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	617, 686, 1246
HpyF3I	CTNAG	7 cut(s)	141, 572, 624, 707, 744, 816, 1300
HpySE526I	ACGT	1 cut(s)	1150
Hsp92II	CATG	1 cut(s)	1076
KpnI	GGTACC	1 cut(s)	1246
KspI	CCGCGG	1 cut(s)	612
Kzo9I	GATC	6 cut(s)	96, 121, 517, 727, 1045, 1196
LmnI	GCTCC	1 cut(s)	613
LpnPI	CCDG	9 cut(s)	270, 651, 654, 666, 879, 920, 1027, 1091, 1259
LweI	GCATC	3 cut(s)	135, 1066, 1104
MaeI	CTAG	2 cut(s)	117, 977
MaeII	ACGT	1 cut(s)	1150
MaeIII	GTNAC	5 cut(s)	136, 295, 322, 374, 1174
MalI	GATC	6 cut(s)	98, 123, 519, 729, 1047, 1198
MboI	GATC	6 cut(s)	96, 121, 517, 727, 1045, 1196
MfeI	CAATTG	1 cut(s)	801
MluCI	AATT	5 cut(s)	801, 854, 1066, 1202, 1271
MlyI	GAGTC	5 cut(s)	193, 425, 658, 949, 1292
MroXI	GAANNNNTTC	1 cut(s)	788
MslI	CAYNNNNRTG	3 cut(s)	143, 443, 594
MspA1I	CMGCKG	2 cut(s)	611, 689
MspI	CCGG	1 cut(s)	1014
MunI	CAATTG	1 cut(s)	801
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	3 cut(s)	617, 686, 1246
NdeII	GATC	6 cut(s)	96, 121, 517, 727, 1045, 1196
NlaIII	CATG	1 cut(s)	1076
NlaIV	GGNNCC	3 cut(s)	166, 289, 1244
NmuCI	GTSAC	4 cut(s)	136, 322, 374, 1174
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	4 cut(s)	14, 193, 820, 973
PleI	GAGTC	5 cut(s)	192, 424, 657, 949, 1292
PpsI	GAGTC	5 cut(s)	192, 424, 657, 949, 1292
PshBI	ATTAAT	3 cut(s)	354, 636, 984
PsiI	TTATAA	1 cut(s)	107
Psp1406I	AACGTT	1 cut(s)	1150
PspN4I	GGNNCC	3 cut(s)	166, 289, 1244
PsrI	GAACNNNNNNTAC	2 cut(s)	280, 312
RsaI	GTAC	4 cut(s)	472, 869, 1162, 1244
RsaNI	GTAC	4 cut(s)	471, 868, 1161, 1243
RseI	CAYNNNNRTG	3 cut(s)	143, 443, 594
SacII	CCGCGG	1 cut(s)	612
Sau3AI	GATC	6 cut(s)	96, 121, 517, 727, 1045, 1196
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	5 cut(s)	193, 425, 658, 949, 1292
SfaNI	GCATC	3 cut(s)	135, 1066, 1104
Sfr303I	CCGCGG	1 cut(s)	612
SgrBI	CCGCGG	1 cut(s)	612
SmiMI	CAYNNNNRTG	3 cut(s)	143, 443, 594
SmlI	CTYRAG	1 cut(s)	1166
SmoI	CTYRAG	1 cut(s)	1166
Sse9I	AATT	5 cut(s)	801, 854, 1066, 1202, 1271
SsiI	CCGC	7 cut(s)	72, 168, 609, 611, 689, 1221, 1240
SspMI	CTAG	2 cut(s)	117, 977
TaaI	ACNGT	2 cut(s)	514, 723
TaiI	ACGT	1 cut(s)	1153
TaqI	TCGA	4 cut(s)	187, 336, 516, 1266
TaqII	GACCGA	1 cut(s)	716
TasI	AATT	5 cut(s)	801, 854, 1066, 1202, 1271
TatI	WGTACW	2 cut(s)	867, 1160
TfiI	GAWTC	4 cut(s)	14, 193, 820, 973
TscAI	CASTG	2 cut(s)	517, 898
TseFI	GTSAC	4 cut(s)	136, 322, 374, 1174
Tsp45I	GTSAC	4 cut(s)	136, 322, 374, 1174
TspDTI	ATGAA	6 cut(s)	171, 427, 491, 829, 1284, 1308
TspGWI	ACGGA	3 cut(s)	177, 549, 789
TspRI	CASTG	2 cut(s)	517, 898
VspI	ATTAAT	3 cut(s)	354, 636, 984
XbaI	TCTAGA	1 cut(s)	976
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	2 cut(s)	117, 977
ZrmI	AGTACT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.