Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

10404600 .. 10408314

Gene Structure 3715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1135000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCAGATGGTCATGAGACTGATAAGAACATTGAAATTTGGAAGATTAAGAAACTGATCAAGGCACTTGAAGCTGCAAGGGGTAATGGAACCAGCATGATTTCTCTCATCATGCCTCCCCGGGATCAGATTTCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCATCAAACATTAAGAGCAGGGTGAATCGACAGTCTGTTCTTGGGGCTATTACATCCGCTCAGCAGAGGCTCAAGCTTTACAACAAAGTTCCTCCGAATGGGCTTGTGCTGTACACAGGGACCATTGTTACTGACGATGGGAAGGAAAAAAAGGTCACCATTGATTTTGAGCCTTTCAGGCCAATCAACGCATCTCTTTACCTCTGTGACAACAAGTTTCATATTGAAGCTCTGAATGAACTCTTAGAATCTGATGACAAGTTTGGTTTCATTGTCATGGACGGAAATGGGACACTTTTTGGGACACTAAGCGGAAACACTAGGGAGGTGCTTCATAAATTTAGTGTCGACCTTCCAAAGAAGCACGGAAGAGGAGGGCAGTCAGCTCTACGTTTTGCTCGTCTGCGAATGGAGAAGCGCCACAACTATGTTAGAAAGACAGCAGAGCTTGCCACACAGTTTTTTATTAATCCTGCCACCAGTCAGCCCAATGTTTCAGGATTAATACTGGCTGGATCAGCTGACTTCAAAACCGAGCTTAGTCAGTCAGATATGTTTGATCCTCGTCTGCAGGCCAAAATACTGAACGTGGTGGATGTTTCTTATGGAGGAGAGAACGGTTTCAACCAGGCTATTGAGCTGTCAGCAGAGATCCTGTCCAATGTGAAATTCATTCAGGAGAAGAAGTTGATTGGAAAATACTTTGAGGAGATTAGCCAGGATACAGGAAAGTATGTTTTTGGTGTTGAGGACACACTAAAAGCCCTAGAGATGGGTGCTGTCGAGATTCTTATTGTGTGGGAAAGTCTGGACATCAATCGGTATGTGCTGAAAAATACGACTACTGGTGAGATTATAGTGAAGCATTTCAACAAGGAGCAGGAGAACAATCAGAGCAACTTCCGGGATGCTAACAATGCGGAGCTAGAGGTTCAGGACAAGACGTCACTGCTGGAGTGGTTTGCTAATGAGTACAGGCGGTTTGGTTGTAGTCTTGAGTTTGTCACCAACAAGTCGCAGGAGGGGTCACAGTTCTGCCGTGGTTTTGGTGGCATTGGAGGAATTCTTCGCTACCAGCTTGATATGAGGTCGTTTGATGAGTTTTCTGACGATGGAGAAGTTTATGATGATTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

437

Amino Acids

49.07

Weight (kDa)

5.54

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	17 - 139	1.7e-52	eRF1 domain 1
eRF1_2	PF03464	144 - 277	2.4e-43	eRF1 domain 2
eRF1_3	PF03465	281 - 417	5.3e-33	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1118
AccBSI	CCGCTC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	4 cut(s)	228, 483, 1091, 1150
AclWI	GGATC	4 cut(s)	132, 694, 725, 817
AcsI	RAATTY	5 cut(s)	36, 161, 509, 839, 1233
AcyI	GRCGYC	1 cut(s)	1115
AfaI	GTAC	2 cut(s)	284, 1145
AfiI	CCNNNNNNNGG	2 cut(s)	269, 943
AgsI	TTSAA	6 cut(s)	35, 71, 398, 700, 796, 1042
AhdI	GACNNNNNGTC	1 cut(s)	1114
AjnI	CCWGG	2 cut(s)	798, 888
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	4 cut(s)	132, 694, 725, 817
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	350, 744
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	5 cut(s)	36, 161, 509, 839, 1233
AseI	ATTAAT	2 cut(s)	639, 674
Asp700I	GAANNNNTTC	2 cut(s)	791, 1037
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	3 cut(s)	121, 122, 1076
AsuHPI	GGTGA	5 cut(s)	167, 205, 319, 1031, 1168
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	4 cut(s)	2, 302, 937, 1277
BceAI	ACGGC	1 cut(s)	1194
BciT130I	CCWGG	2 cut(s)	800, 890
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	3 cut(s)	121, 122, 1076
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	3 cut(s)	492, 938, 1097
BfmI	CTRYAG	1 cut(s)	740
BfoI	RGCGCY	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	886
BglI	GCCNNNNNGGC	1 cut(s)	349
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	5 cut(s)	121, 122, 800, 890, 1076
Bme18I	GGWCC	1 cut(s)	291
BmeRI	GACNNNNNGTC	1 cut(s)	1114
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	91, 292
BmrFI	CCNGG	5 cut(s)	121, 122, 800, 890, 1076
BmsI	GCATC	4 cut(s)	138, 182, 371, 1069
BpmI	CTGGAG	1 cut(s)	1145
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	227, 1187
BpuMI	CCSGG	3 cut(s)	121, 122, 1076
BsaHI	GRCGYC	1 cut(s)	1115
BsaJI	CCNNGG	3 cut(s)	119, 120, 1210
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 943
Bse1I	ACTGG	3 cut(s)	651, 684, 1021
BseBI	CCWGG	2 cut(s)	800, 890
BseDI	CCNNGG	3 cut(s)	119, 120, 1210
BseGI	GGATG	3 cut(s)	224, 772, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	269, 943
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	3 cut(s)	651, 684, 1021
BseRI	GAGGAG	3 cut(s)	558, 795, 893
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	352, 746
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	121, 1075
BslFI	GGGAC	3 cut(s)	304, 475, 487
BslI	CCNNNNNNNGG	2 cut(s)	269, 943
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	3 cut(s)	304, 475, 487
BsnI	GGCC	2 cut(s)	352, 746
BsoBI	CYCGRG	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	57, 124, 686, 730, 822
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	4 cut(s)	228, 483, 1091, 1150
BspANI	GGCC	2 cut(s)	352, 746
BspCNI	CTCAG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	91, 292
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	4 cut(s)	132, 694, 725, 817
BsrBI	CCGCTC	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	651, 684, 1021
BssECI	CCNNGG	3 cut(s)	119, 120, 1210
BssMI	GATC	5 cut(s)	57, 124, 686, 730, 822
BssNI	GRCGYC	1 cut(s)	1115
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	800, 890
Bst4CI	ACNGT	4 cut(s)	204, 630, 791, 1203
Bst6I	CTCTTC	1 cut(s)	535
BstACI	GRCGYC	1 cut(s)	1115
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	621, 744
BstDEI	CTNAG	5 cut(s)	144, 231, 415, 479, 710
BstDSI	CCRYGG	1 cut(s)	1210
BstEII	GGTNACC	1 cut(s)	325
BstF5I	GGATG	3 cut(s)	224, 772, 1084
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	5 cut(s)	60, 127, 689, 733, 825
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	5 cut(s)	57, 124, 686, 730, 822
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 349, 620, 689, 1088
BstNI	CCWGG	2 cut(s)	800, 890
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	5 cut(s)	119, 120, 798, 888, 1074
BstSFI	CTRYAG	1 cut(s)	740
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	822
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	2 cut(s)	352, 746
BtgI	CCRYGG	1 cut(s)	1210
BtsCI	GGATG	3 cut(s)	224, 772, 1084
BtsI	GCAGTG	1 cut(s)	1118
BtsIMutI	CAGTG	1 cut(s)	1118
Cac8I	GCNNGC	2 cut(s)	621, 744
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	291
Cfr9I	CCCGGG	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	283, 1144
CviAII	CATG	4 cut(s)	14, 97, 112, 448
CviQI	GTAC	2 cut(s)	283, 1144
DdeI	CTNAG	5 cut(s)	144, 231, 415, 479, 710
DpnI	GATC	5 cut(s)	59, 126, 688, 732, 824
DpnII	GATC	5 cut(s)	57, 124, 686, 730, 822
DriI	GACNNNNNGTC	1 cut(s)	1114
Eam1104I	CTCTTC	1 cut(s)	535
Eam1105I	GACNNNNNGTC	1 cut(s)	1114
EarI	CTCTTC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	1233
EcoRII	CCWGG	2 cut(s)	798, 888
FaeI	CATG	4 cut(s)	17, 100, 115, 451
FaqI	GGGAC	3 cut(s)	304, 475, 487
FatI	CATG	4 cut(s)	13, 96, 111, 447
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	3 cut(s)	211, 779, 1091
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	3 cut(s)	492, 938, 1097
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	1145
HaeII	RGCGCY	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	352, 746
HapII	CCGG	2 cut(s)	121, 1075
HhaI	GCGC	1 cut(s)	591
Hin1I	GRCGYC	1 cut(s)	1115
Hin1II	CATG	4 cut(s)	17, 100, 115, 451
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	4 cut(s)	196, 419, 958, 1301
HpaII	CCGG	2 cut(s)	121, 1075
HphI	GGTGA	5 cut(s)	167, 205, 319, 1031, 1168
Hpy166II	GTNNAC	2 cut(s)	285, 520
Hpy188I	TCNGA	8 cut(s)	129, 267, 405, 424, 721, 1065, 1279, 1306
Hpy188III	TCNNGA	7 cut(s)	14, 669, 848, 955, 980, 1106, 1166
Hpy8I	GTNNAC	2 cut(s)	285, 520
HpyAV	CCTTC	2 cut(s)	307, 533
HpyCH4III	ACNGT	4 cut(s)	204, 630, 791, 1203
HpyCH4IV	ACGT	3 cut(s)	562, 759, 1115
HpyCH4V	TGCA	3 cut(s)	77, 173, 742
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 349, 620, 689, 1088
HpyF3I	CTNAG	5 cut(s)	144, 231, 415, 479, 710
HpySE526I	ACGT	3 cut(s)	562, 759, 1115
Hsp92I	GRCGYC	1 cut(s)	1115
Hsp92II	CATG	4 cut(s)	17, 100, 115, 451
HspAI	GCGC	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	5 cut(s)	57, 124, 686, 730, 822
LmnI	GCTCC	2 cut(s)	1048, 1093
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	4 cut(s)	138, 182, 371, 1069
MaeI	CTAG	3 cut(s)	492, 938, 1097
MaeII	ACGT	3 cut(s)	562, 759, 1115
MaeIII	GTNAC	7 cut(s)	139, 298, 325, 377, 1116, 1174, 1197
MalI	GATC	5 cut(s)	59, 126, 688, 732, 824
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	5 cut(s)	57, 124, 686, 730, 822
MboII	GAAGA	4 cut(s)	55, 552, 865, 1229
MflI	RGATCY	1 cut(s)	822
MluCI	AATT	5 cut(s)	36, 161, 509, 839, 1233
MroXI	GAANNNNTTC	2 cut(s)	791, 1037
MseI	TTAA	4 cut(s)	48, 183, 639, 674
MslI	CAYNNNNRTG	2 cut(s)	446, 597
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	2 cut(s)	121, 1075
MspR9I	CCNGG	5 cut(s)	121, 122, 800, 890, 1076
MvaI	CCWGG	2 cut(s)	800, 890
MwoI	GCNNNNNNNGC	5 cut(s)	71, 349, 620, 689, 1088
NciI	CCSGG	3 cut(s)	121, 122, 1076
NdeII	GATC	5 cut(s)	57, 124, 686, 730, 822
NlaIII	CATG	4 cut(s)	17, 100, 115, 451
NlaIV	GGNNCC	2 cut(s)	91, 292
NmuCI	GTSAC	5 cut(s)	325, 377, 1116, 1174, 1197
PagI	TCATGA	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	2 cut(s)	791, 1037
PfeI	GAWTC	4 cut(s)	196, 419, 958, 1301
PfoI	TCCNGGA	1 cut(s)	1074
PkrI	GCNGC	1 cut(s)	76
PshBI	ATTAAT	2 cut(s)	639, 674
Psp6I	CCWGG	2 cut(s)	798, 888
PspEI	GGTNACC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	798, 888
PspN4I	GGNNCC	2 cut(s)	91, 292
PspPI	GGNCC	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	822
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	2 cut(s)	284, 1145
RsaNI	GTAC	2 cut(s)	283, 1144
RseI	CAYNNNNRTG	2 cut(s)	446, 597
SalI	GTCGAC	1 cut(s)	518
SaqAI	TTAA	4 cut(s)	48, 183, 639, 674
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	5 cut(s)	57, 124, 686, 730, 822
Sau96I	GGNCC	1 cut(s)	291
ScrFI	CCNGG	5 cut(s)	121, 122, 800, 890, 1076
SfaNI	GCATC	4 cut(s)	138, 182, 371, 1069
SfcI	CTRYAG	1 cut(s)	740
SinI	GGWCC	1 cut(s)	291
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	446, 597
SmlI	CTYRAG	2 cut(s)	242, 1166
SmoI	CTYRAG	2 cut(s)	242, 1166
Sse9I	AATT	5 cut(s)	36, 161, 509, 839, 1233
SsiI	CCGC	4 cut(s)	228, 483, 1091, 1150
SspMI	CTAG	3 cut(s)	492, 938, 1097
StyD4I	CCNGG	5 cut(s)	119, 120, 798, 888, 1074
TaaI	ACNGT	4 cut(s)	204, 630, 791, 1203
TaiI	ACGT	3 cut(s)	565, 762, 1118
TaqI	TCGA	3 cut(s)	199, 519, 954
TasI	AATT	5 cut(s)	36, 161, 509, 839, 1233
TatI	WGTACW	2 cut(s)	282, 1143
TfiI	GAWTC	4 cut(s)	196, 419, 958, 1301
Tru1I	TTAA	4 cut(s)	48, 183, 639, 674
Tru9I	TTAA	4 cut(s)	48, 183, 639, 674
TscAI	CASTG	1 cut(s)	1125
TseFI	GTSAC	5 cut(s)	325, 377, 1116, 1174, 1197
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	5 cut(s)	325, 377, 1116, 1174, 1197
TspDTI	ATGAA	6 cut(s)	174, 380, 423, 430, 494, 832
TspGWI	ACGGA	2 cut(s)	468, 552
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	1 cut(s)	1125
VpaK11BI	GGWCC	1 cut(s)	291
VspI	ATTAAT	2 cut(s)	639, 674
XapI	RAATTY	5 cut(s)	36, 161, 509, 839, 1233
XmaI	CCCGGG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	519
XmnI	GAANNNNTTC	2 cut(s)	791, 1037
XspI	CTAG	3 cut(s)	492, 938, 1097
ZraI	GACGTC	1 cut(s)	1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.