pycom07g02390
ERF Family

Eukaryotic peptide chain release factor subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
1936110 .. 1937912
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02390.1

Sequence Viewer

Length: 1632 bp
ATGGCCGATGCTCATGAGACTCCTGATAAGAACATTGAGCTATGGAGAATTAAGAAACTGATCAAGGGACTTGAAGCTGCAAAGGGCAATGGCACCAGTATGATTTCTCTCATCATTCCTCCCCGTGATAAAATACCTCGAGTTACGAAGATGCTTAGTGATGAATTAGGATCAGCTTTGAATATCAAAAGTAGGGTGAATCGTCAGTCTGTTCAAGGTGCAATTACATCAGCTCAGCAGCGGCTCAAGCTCTATAACAAGGTTCCTCCAAATGGCCTTGCTCTGTTTACAGGAACCATTGCTACCGAAGATGGCAATGAAAAGAAGGTCACGTTTGATTTCGAGCCTTTGAAGCCGATCAATGTGTCTCTATACCTCTGTGACAACAAGTTCCATACCGAAGCTCTGAATGAACTCTTAGAATGTGGTGAAAAATTTGGTTTCATTATCATGGATGGTAGGGGGACTCTTTTCGGGACATTGATTGGTAACGTAAGGGAGGTTCTTCAGAAGTATCGCATTGACCTGCCAAAGAAACATGGAAGAGGTGGGCAATCAGCTCTTCGATTTGCTCGCCTTGGAGAGGAAGCACGCGACAACCATGTTATCAAGACAGCAGAGCTTGCCAAAAGTTTGTTTATTAATCCAGCCACTAACCAGCCCAATGTTAAAGGATTAATACTGGCTGGATCAGCTGATTTCAAAACTAAGCTTAGTGAGTCGGGTAAGTTTGATCCCCGTCTGCAGGCAAAAATACTGAAAGTGGTGGATATTTCTTATGGAGGAGAGGATGGATTCAATCAGGCTATTAAGCTGTCTGCTGAATTTCTGTCCAATGTGAAATTTATACAGGAGCAGATCTTATTAGGGAAATACTTTAAAGAGGTTAATGAGGATACAGGAAAGTATGTTATTGGCGTAGAGGACACGCTAAAGGCTTTGGAGATGGGAACAATTAAGACACTTATTGTGTGGGAAAATCTGGAGATCGATAGGTATGTGTTAAAGAATTCAAAGACTGATGAGATTGCTGTGAAATATTTCGACAAGGAGCAGGAAAAAAATATGAGCAACTTTCAAGATCCTGCCAGCCAAGGAGAGCTAAAGATTCAGGAGAAGATGTCACTGTTGGAATGGTTTGCTGATGAGTACAAGCGTTTTGGTTGTGCTCTTGAGTTTGTCACCAACAAATCACAAGAGGGGTCACAATTCTGTCGAGGTTTTGGGGGTATTGGAGGGCTTCTCCGCTACCAGCTTGATATAAGGTCGTTTGACGAGTTTGGTGATGATGAAGTGGATGAGGATGGAGAAGTTTACGATGTTGAAGAGGCTGAAAGCAGGGGTGAAAAAGCCTGCACCAGCGCGCATGGGGTAGTGGCAGCTGCTGCTGCTCCTGAGCGGTGCTCCAAAACAATTTCAGGCTCGACCAAGGACATTGCATTATCATCTGATTCCGAAAGGCTTAATGTGGTTATTGCATCTGGGTCACAAAGAGGTGGGGGTGAAAAAGCCTGCACCAAAGTTACAACTGCTGCTCCGGAGAAGTGCTCCAAAAAATTCTCAGCCCTGACCAAGGTTTGTATTTATGCCCCCTCCATATCATATCCAACACTGTATCTTTTTGTTATCTGA

Protein Analysis

544

Amino Acids

60.03

Weight (kDa)

6.35

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eRF1_1 PF03463 18 - 140 1.3e-49 eRF1 domain 1
eRF1_2 PF03464 145 - 278 2.5e-35 eRF1 domain 2
eRF1_3 PF03465 282 - 419 2.4e-28 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 1399
AccII CGCG 2 cut(s) 594, 1364
AccIII TCCGGA 1 cut(s) 1537
AciI CCGC 3 cut(s) 241, 1246, 1399
AclWI GGATC 4 cut(s) 178, 697, 728, 1076
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 434, 824, 842, 1009, 1556
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 1 cut(s) 1151
AfiI CCNNNNNNNGG 4 cut(s) 272, 583, 745, 1573
AgsI TTSAA 9 cut(s) 74, 181, 215, 352, 703, 799, 1014, 1079, 1325
Alw21I GWGCWC 3 cut(s) 1171, 1406, 1550
Alw26I GTCTC 2 cut(s) 11, 372
AlwI GGATC 4 cut(s) 178, 697, 728, 1076
AlwNI CAGNNNCTG 1 cut(s) 1385
Ama87I CYCGRG 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 1537
AoxI GGCC 2 cut(s) 3, 274
ApeKI GCWGC 7 cut(s) 77, 238, 1379, 1382, 1385, 1388, 1532
ApoI RAATTY 5 cut(s) 434, 824, 842, 1009, 1556
AseI ATTAAT 2 cut(s) 642, 677
Asp700I GAANNNNTTC 1 cut(s) 1040
AspLEI GCGC 2 cut(s) 1364, 1366
AsuHPI GGTGA 6 cut(s) 208, 440, 1174, 1295, 1355, 1514
AvaI CYCGRG 1 cut(s) 138
BanI GGYRCC 1 cut(s) 92
Bbv12I GWGCWC 3 cut(s) 1171, 1406, 1550
BbvI GCAGC 7 cut(s) 64, 250, 1369, 1372, 1375, 1391, 1519
BccI CCATC 5 cut(s) 305, 449, 785, 940, 1298
BciVI GTATCC 1 cut(s) 889
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 11, 372
BfmI CTRYAG 1 cut(s) 743
BfuAI ACCTGC 1 cut(s) 534
BfuI GTATCC 1 cut(s) 889
BglII AGATCT 1 cut(s) 858
BisI GCNGC 8 cut(s) 78, 239, 242, 1380, 1383, 1386, 1389, 1533
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 8 cut(s) 79, 240, 243, 1381, 1384, 1387, 1390, 1534
BmeT110I CYCGRG 1 cut(s) 138
BmiI GGNNCC 3 cut(s) 94, 264, 295
BmsI GCATC 2 cut(s) 141, 1487
BplI GAGNNNNNCTC 6 cut(s) 1227, 1259, 1388, 1420, 1532, 1564
BpmI CTGGAG 1 cut(s) 1004
Bpu10I CCTNAGC 1 cut(s) 1395
Bpu1102I GCTNAGC 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 230, 1193
Bsa29I ATCGAT 1 cut(s) 990
BsaJI CCNNGG 4 cut(s) 577, 1093, 1428, 1572
BsaWI WCCGGW 1 cut(s) 1537
BsaXI ACNNNNNCTCC 4 cut(s) 1106, 1136, 1519, 1549
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 583, 745, 1573
Bse1I ACTGG 2 cut(s) 96, 687
Bse3DI GCAATG 4 cut(s) 94, 297, 322, 1434
BseAI TCCGGA 1 cut(s) 1537
BseCI ATCGAT 1 cut(s) 990
BseDI CCNNGG 4 cut(s) 577, 1093, 1428, 1572
BseGI GGATG 4 cut(s) 460, 796, 1303, 1309
BseLI CCNNNNNNNGG 4 cut(s) 272, 583, 745, 1573
BseMI GCAATG 4 cut(s) 94, 297, 322, 1434
BseMII CTCAG 3 cut(s) 248, 1386, 1575
BseNI ACTGG 2 cut(s) 96, 687
BsePI GCGCGC 1 cut(s) 1362
BseRI GAGGAG 1 cut(s) 798
BseXI GCAGC 7 cut(s) 64, 250, 1369, 1372, 1375, 1391, 1519
BsgI GTGCAG 2 cut(s) 1339, 1498
Bsh1236I CGCG 2 cut(s) 594, 1364
BshFI GGCC 2 cut(s) 5, 276
BshNI GGYRCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 990
BsiHKAI GWGCWC 3 cut(s) 1171, 1406, 1550
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 1538
BslFI GGGAC 3 cut(s) 81, 478, 490
BslI CCNNNNNNNGG 4 cut(s) 272, 583, 745, 1573
BsmAI GTCTC 2 cut(s) 11, 372
BsmFI GGGAC 3 cut(s) 81, 478, 490
BsnI GGCC 2 cut(s) 5, 276
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 3 cut(s) 1171, 1406, 1550
Bsp13I TCCGGA 1 cut(s) 1537
Bsp143I GATC 8 cut(s) 60, 170, 357, 689, 733, 858, 987, 1081
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 3 cut(s) 241, 1246, 1399
BspANI GGCC 2 cut(s) 5, 276
BspCNI CTCAG 3 cut(s) 247, 1387, 1574
BspDI ATCGAT 1 cut(s) 990
BspEI TCCGGA 1 cut(s) 1537
BspFNI CGCG 2 cut(s) 594, 1364
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 3 cut(s) 94, 264, 295
BspMAI CTGCAG 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 4 cut(s) 178, 697, 728, 1076
BspQI GCTCTTC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 1399
BsrDI GCAATG 4 cut(s) 94, 297, 322, 1434
BsrI ACTGG 2 cut(s) 96, 687
BssECI CCNNGG 4 cut(s) 577, 1093, 1428, 1572
BssHII GCGCGC 1 cut(s) 1362
BssMI GATC 8 cut(s) 60, 170, 357, 689, 733, 858, 987, 1081
BssT1I CCWWGG 4 cut(s) 577, 1093, 1428, 1572
Bst4CI ACNGT 2 cut(s) 1128, 1614
Bst6I CTCTTC 3 cut(s) 538, 567, 1320
BstAPI GCANNNNNTGC 2 cut(s) 623, 1385
BstC8I GCNNGC 8 cut(s) 574, 592, 624, 747, 1090, 1354, 1364, 1513
BstDEI CTNAG 7 cut(s) 155, 234, 418, 708, 713, 1395, 1561
BstENI CCTNNNNNAGG 2 cut(s) 581, 1571
BstF5I GGATG 4 cut(s) 460, 796, 1303, 1309
BstFNI CGCG 2 cut(s) 594, 1364
BstHHI GCGC 2 cut(s) 1364, 1366
BstKTI GATC 8 cut(s) 63, 173, 360, 692, 736, 861, 990, 1084
BstMAI GTCTC 2 cut(s) 11, 372
BstMBI GATC 8 cut(s) 60, 170, 357, 689, 733, 858, 987, 1081
BstMWI GCNNNNNNNGC 6 cut(s) 247, 352, 623, 692, 1385, 1388
BstSFI CTRYAG 1 cut(s) 743
BstUI CGCG 2 cut(s) 594, 1364
BstV1I GCAGC 7 cut(s) 64, 250, 1369, 1372, 1375, 1391, 1519
BstX2I RGATCY 2 cut(s) 858, 1081
BstYI RGATCY 2 cut(s) 858, 1081
Bsu15I ATCGAT 1 cut(s) 990
BsuI GTATCC 1 cut(s) 889
BsuRI GGCC 2 cut(s) 5, 276
BsuTUI ATCGAT 1 cut(s) 990
BtsCI GGATG 4 cut(s) 460, 796, 1303, 1309
BtsIMutI CAGTG 2 cut(s) 1124, 1610
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 8 cut(s) 574, 592, 624, 747, 1090, 1354, 1364, 1513
CaiI CAGNNNCTG 1 cut(s) 1385
CciI TCATGA 1 cut(s) 13
CfoI GCGC 2 cut(s) 1364, 1366
ClaI ATCGAT 1 cut(s) 990
Csp6I GTAC 1 cut(s) 1150
CviAII CATG 5 cut(s) 14, 451, 539, 602, 1367
CviQI GTAC 1 cut(s) 1150
DdeI CTNAG 7 cut(s) 155, 234, 418, 708, 713, 1395, 1561
DpnI GATC 8 cut(s) 62, 172, 359, 691, 735, 860, 989, 1083
DpnII GATC 8 cut(s) 60, 170, 357, 689, 733, 858, 987, 1081
DraI TTTAAA 1 cut(s) 880
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 538, 567, 1320
EarI CTCTTC 3 cut(s) 538, 567, 1320
Eco130I CCWWGG 4 cut(s) 577, 1093, 1428, 1572
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 138
EcoNI CCTNNNNNAGG 2 cut(s) 581, 1571
EcoRI GAATTC 1 cut(s) 1009
EcoT14I CCWWGG 4 cut(s) 577, 1093, 1428, 1572
ErhI CCWWGG 4 cut(s) 577, 1093, 1428, 1572
FaeI CATG 5 cut(s) 17, 454, 542, 605, 1370
FaqI GGGAC 3 cut(s) 81, 478, 490
FatI CATG 5 cut(s) 13, 450, 538, 601, 1366
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 8 cut(s) 78, 239, 242, 1380, 1383, 1386, 1389, 1533
FokI GGATG 4 cut(s) 467, 803, 1310, 1316
Fsp4HI GCNGC 8 cut(s) 78, 239, 242, 1380, 1383, 1386, 1389, 1533
GlaI GCGC 2 cut(s) 1363, 1365
GluI GCNGC 8 cut(s) 78, 239, 242, 1380, 1383, 1386, 1389, 1533
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 2 cut(s) 5, 276
HapII CCGG 1 cut(s) 1538
HhaI GCGC 2 cut(s) 1364, 1366
Hin1II CATG 5 cut(s) 17, 454, 542, 605, 1370
Hin6I GCGC 2 cut(s) 1362, 1364
HinP1I GCGC 2 cut(s) 1362, 1364
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 7 cut(s) 19, 199, 466, 719, 795, 1108, 1451
HpaII CCGG 1 cut(s) 1538
HphI GGTGA 6 cut(s) 208, 440, 1174, 1295, 1355, 1514
Hpy166II GTNNAC 2 cut(s) 288, 1315
Hpy188I TCNGA 5 cut(s) 408, 510, 1450, 1456, 1631
Hpy8I GTNNAC 2 cut(s) 288, 1315
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 1128, 1614
HpyCH4IV ACGT 2 cut(s) 332, 492
HpyCH4V TGCA 7 cut(s) 80, 221, 745, 1356, 1439, 1478, 1515
HpyF10VI GCNNNNNNNGC 6 cut(s) 247, 352, 623, 692, 1385, 1388
HpyF3I CTNAG 7 cut(s) 155, 234, 418, 708, 713, 1395, 1561
HpySE526I ACGT 2 cut(s) 332, 492
Hsp92II CATG 5 cut(s) 17, 454, 542, 605, 1370
HspAI GCGC 2 cut(s) 1362, 1364
Kpn2I TCCGGA 1 cut(s) 1537
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 8 cut(s) 60, 170, 357, 689, 733, 858, 987, 1081
LguI GCTCTTC 1 cut(s) 567
LmnI GCTCC 6 cut(s) 853, 1051, 1396, 1409, 1540, 1553
Lsp1109I GCAGC 7 cut(s) 64, 250, 1369, 1372, 1375, 1391, 1519
LweI GCATC 2 cut(s) 141, 1487
MaeII ACGT 2 cut(s) 332, 492
MaeIII GTNAC 9 cut(s) 142, 328, 380, 488, 1122, 1180, 1203, 1485, 1522
MalI GATC 8 cut(s) 62, 172, 359, 691, 735, 860, 989, 1083
MbiI CCGCTC 1 cut(s) 1399
MboI GATC 8 cut(s) 60, 170, 357, 689, 733, 858, 987, 1081
MboII GAAGA 7 cut(s) 160, 320, 497, 554, 555, 1129, 1337
MflI RGATCY 2 cut(s) 858, 1081
MhlI GDGCHC 3 cut(s) 1171, 1406, 1550
MlyI GAGTC 3 cut(s) 13, 460, 728
MmeI TCCRAC 2 cut(s) 1110, 1631
MroI TCCGGA 1 cut(s) 1537
MroXI GAANNNNTTC 1 cut(s) 1040
MslI CAYNNNNRTG 2 cut(s) 98, 449
MspA1I CMGCKG 3 cut(s) 241, 695, 1382
MspI CCGG 1 cut(s) 1538
MvnI CGCG 2 cut(s) 594, 1364
MwoI GCNNNNNNNGC 6 cut(s) 247, 352, 623, 692, 1385, 1388
NdeII GATC 8 cut(s) 60, 170, 357, 689, 733, 858, 987, 1081
NlaIII CATG 5 cut(s) 17, 454, 542, 605, 1370
NlaIV GGNNCC 3 cut(s) 94, 264, 295
NmuCI GTSAC 6 cut(s) 328, 380, 1122, 1180, 1203, 1485
PaeR7I CTCGAG 1 cut(s) 138
PagI TCATGA 1 cut(s) 13
PauI GCGCGC 1 cut(s) 1362
PciSI GCTCTTC 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 1040
PfeI GAWTC 4 cut(s) 199, 795, 1108, 1451
PkrI GCNGC 8 cut(s) 79, 240, 243, 1381, 1384, 1387, 1390, 1534
PleI GAGTC 3 cut(s) 13, 460, 727
PpsI GAGTC 3 cut(s) 13, 460, 727
PshBI ATTAAT 2 cut(s) 642, 677
PspN4I GGNNCC 3 cut(s) 94, 264, 295
PspXI VCTCGAGB 1 cut(s) 138
PsrI GAACNNNNNNTAC 4 cut(s) 286, 318, 486, 518
PstI CTGCAG 1 cut(s) 747
PstNI CAGNNNCTG 1 cut(s) 1385
PsuI RGATCY 2 cut(s) 858, 1081
PteI GCGCGC 1 cut(s) 1362
PvuII CAGCTG 2 cut(s) 695, 1382
RsaI GTAC 1 cut(s) 1151
RsaNI GTAC 1 cut(s) 1150
RseI CAYNNNNRTG 2 cut(s) 98, 449
SapI GCTCTTC 1 cut(s) 567
SatI GCNGC 8 cut(s) 78, 239, 242, 1380, 1383, 1386, 1389, 1533
Sau3AI GATC 8 cut(s) 60, 170, 357, 689, 733, 858, 987, 1081
SchI GAGTC 3 cut(s) 13, 460, 728
SduI GDGCHC 3 cut(s) 1171, 1406, 1550
SfaNI GCATC 2 cut(s) 141, 1487
SfcI CTRYAG 1 cut(s) 743
Sfr274I CTCGAG 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 98, 449
SmlI CTYRAG 3 cut(s) 138, 245, 1172
SmoI CTYRAG 3 cut(s) 138, 245, 1172
SsiI CCGC 3 cut(s) 241, 1246, 1399
SspI AATATT 1 cut(s) 1040
StyI CCWWGG 4 cut(s) 577, 1093, 1428, 1572
TaaI ACNGT 2 cut(s) 1128, 1614
TaiI ACGT 2 cut(s) 335, 495
TaqI TCGA 7 cut(s) 139, 342, 565, 990, 1044, 1216, 1424
TatI WGTACW 1 cut(s) 1149
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 4 cut(s) 199, 795, 1108, 1451
TscAI CASTG 2 cut(s) 1131, 1617
TseFI GTSAC 6 cut(s) 328, 380, 1122, 1180, 1203, 1485
TseI GCWGC 7 cut(s) 77, 238, 1379, 1382, 1385, 1388, 1532
Tsp45I GTSAC 6 cut(s) 328, 380, 1122, 1180, 1203, 1485
TspDTI ATGAA 5 cut(s) 177, 333, 426, 433, 1305
TspRI CASTG 2 cut(s) 1131, 1617
VspI ATTAAT 2 cut(s) 642, 677
XagI CCTNNNNNAGG 2 cut(s) 581, 1571
XapI RAATTY 5 cut(s) 434, 824, 842, 1009, 1556
XhoI CTCGAG 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.