Rh6CG287600
ERF Family

Eukaryotic peptide chain release factor subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
46539001 .. 46555540
16540 bp
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UTR
Exon/CDS
Intron
Rh6CG287600.1

Sequence Viewer

Length: 1833 bp
ATGGTGCAATCTAAAAACTTAACACTATCTTTCTCATCGGAGAGTTCCATTGAAGAAGAACTTAAGAGTGAAAGCACTGCAGATGCTATTACAATATTGGTATTGCTAGGTCTCTCTGGAGTTTTTCTTGTCATGCTATCCGTTCTTGGATCAGTGGGATTTTTCAGTGCCATTGGAGTTAAATCTACCCTAATTATTATGGAAGCTAGTCATCCCATTTCTTGTTCTAGCTGTGTTGCACATTCAGGAATATCGGATGAGAAAGTGGCTTACAGAGAATTTGGCAATTGGATTTCCATCAGAAGAAGATCAGAGCTGCCAAAGTTGTTGCACAGGATTCTTACTATGCCGTCAAAAGGGGGAGCGTTTCAAGTCAGGACTAGCTTTGAGTACACTTTGAAGAGCATGTGTAAAGAAGGTGCATGTTATGAGGACTTCTCAACAATTCTCTCCCCCTCTCTCGAAAGTTCTGCCGATCCAAGCCATCAGTTGTTGTTCAGAATGGCAGATTATCACGAGACCGATAAACACATTGAGATGTGGAAAACTAAGAAACTAATCAAGGGACTTGAAGCTGCCAGGGGTAATGGCACCAGCATGATTTCTCTCATCATTCCTCCCCGTGATCAAATCACTCGTGTTACTAAGATGTTGGATAATGAGTATGGAACTGCTTCAAATATCAAAAGCAGGGTGAACCGTCAGTCTGTTTTATGTGCAATTAAATCTGCTCTGCAGCGGCTCAAGGGTTACAACAAGCTTCCTCCTAATGGACTTGTGCTCTATATTGGAACAATTGTTACTGAAGACAGGAAGGAGAAAAAGATTGCAATTAATTTTGAGCCTTTCAAGCCCATCAATGTGTCTCTTTACCTCTGTGACAACAAGTTCCATGTTGAAGCTCTTAATGAACTCTTAGAATCTGATGAGAAATTTGGTTTCATTGTCATAGATGGTCATGGTAGTCTTTTTGGGACATTAAGTGGTAACACGAGGAAGGTGCTTCATAACTATACTGTTGACCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTTCGTTTTGCTCGTCTTGGAGAGGAGGCACGCCACAACTATGTTTCTAAGGCAGCAGAAAATGCCACTAAGCTTTTTATTAACCCTGCCACCAACAAGCCCAATGTTGCAGGAATAATACTGGCAGGATCAGCGGACTTCAAAATTGTGCTTAGTGGGTCAGACAAGTTTGATCCGCGTCTGCAGGCCAAAATACTGAATGTAGTGAGTGTTCGTTGTGGAGGAGAGAATGGTTTCGATCAGGCTATAGACTTGTCATCAAAGATTCTATCCAATGTGAAATTTGTGCAGGAGAAACGCTTGATGGAAAAATACTTTGAAGAGATTAGATTGGATAGAGGAATGTATGTTTTTGGTTTAGATGATACACTAAAAGCTTTGGAGAGAGGTGCTGTGAAGATACTTATTGTGTCGGAAAGACTGGAAATTAGTAGGTATGAGCTGAAAAACTCTAGTACTGGTGAGATTGTTGTCAAACATCTTAACAAAGAGCAAGAAAACAATAAGAGCAACTTTTGGGATTCTGCCAACTCTAGAGAACTAGATATTCAAGACAAGATGTCATTGTTGGAGTGGTTCACTGAAGAGTACAAGGGGTTTGGTTGTACGCTTGAGCTTGTCACCAACAAATCACAAGAGGGGTCACATTTCTGCCAAGGTTTTGGGGGCATTGGAGGAATTCTCCGCTACCAGCTTGATATGAGATCATTTGATGAGTTTTCTGATGATGAAGAAGTTTATGATGCTGGAGAAGTTTCTGATGATGCTAAATAG

Protein Analysis

610

Amino Acids

68.07

Weight (kDa)

6.54

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eRF1_1 PF03463 184 - 306 9.3e-51 eRF1 domain 1
eRF1_2 PF03464 311 - 444 2.1e-34 eRF1 domain 2
eRF1_3 PF03465 448 - 585 1.9e-28 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 590
AccII CGCG 1 cut(s) 1237
AciI CCGC 4 cut(s) 739, 1193, 1235, 1744
AclWI GGATC 4 cut(s) 157, 470, 1195, 1226
AcsI RAATTY 4 cut(s) 278, 932, 1340, 1737
AcuI CTGAAG 2 cut(s) 825, 1662
AfaI GTAC 4 cut(s) 392, 1516, 1649, 1666
AfiI CCNNNNNNNGG 2 cut(s) 356, 770
AflII CTTAAG 1 cut(s) 62
AhdI GACNNNNNGTC 1 cut(s) 1618
AjnI CCWGG 1 cut(s) 578
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 3 cut(s) 116, 512, 870
AlwI GGATC 4 cut(s) 157, 470, 1195, 1226
AoxI GGCC 1 cut(s) 1245
ApeKI GCWGC 4 cut(s) 316, 575, 736, 1112
ApoI RAATTY 4 cut(s) 278, 932, 1340, 1737
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 2 cut(s) 673, 1292
AsuHPI GGTGA 3 cut(s) 706, 1532, 1672
BanI GGYRCC 1 cut(s) 590
BauI CACGAG 3 cut(s) 515, 636, 991
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 4 cut(s) 303, 562, 748, 1124
BccI CCATC 5 cut(s) 305, 492, 863, 947, 1357
BceAI ACGGC 1 cut(s) 334
BcgI CGANNNNNNTGC 4 cut(s) 452, 486, 982, 1016
BciT130I CCWGG 1 cut(s) 580
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 116, 512, 870
BfaI CTAG 7 cut(s) 107, 207, 228, 381, 1512, 1593, 1601
BfmI CTRYAG 4 cut(s) 78, 734, 1241, 1305
BfrI CTTAAG 1 cut(s) 62
BisI GCNGC 5 cut(s) 317, 576, 737, 740, 1113
BlsI GCNGC 5 cut(s) 318, 577, 738, 741, 1114
BmcAI AGTACT 1 cut(s) 1516
Bme1390I CCNGG 1 cut(s) 580
BmeRI GACNNNNNGTC 1 cut(s) 1618
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 1 cut(s) 580
BmsI GCATC 3 cut(s) 73, 1792, 1813
BpiI GAAGAC 1 cut(s) 813
BplI GAGNNNNNCTC 4 cut(s) 422, 454, 1725, 1757
BpmI CTGGAG 2 cut(s) 138, 1827
BpuEI CTTGAG 2 cut(s) 728, 1691
BsaBI GATNNNNATC 1 cut(s) 296
BsaI GGTCTC 2 cut(s) 116, 512
BsaJI CCNNGG 2 cut(s) 579, 1714
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 770
Bse1I ACTGG 3 cut(s) 1185, 1485, 1522
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 2 cut(s) 579, 1714
BseGI GGATG 2 cut(s) 211, 262
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 356, 770
BseNI ACTGG 3 cut(s) 1185, 1485, 1522
BseRI GAGGAG 3 cut(s) 1059, 1097, 1296
BseXI GCAGC 4 cut(s) 303, 562, 748, 1124
BsgI GTGCAG 1 cut(s) 1367
Bsh1236I CGCG 1 cut(s) 1237
BshFI GGCC 1 cut(s) 1247
BshNI GGYRCC 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 783
BslFI GGGAC 2 cut(s) 579, 988
BslI CCNNNNNNNGG 2 cut(s) 356, 770
BsmAI GTCTC 3 cut(s) 116, 512, 870
BsmFI GGGAC 2 cut(s) 579, 988
BsnI GGCC 1 cut(s) 1247
Bso31I GGTCTC 2 cut(s) 116, 512
Bsp1286I GDGCHC 1 cut(s) 783
Bsp143I GATC 8 cut(s) 149, 308, 475, 625, 1187, 1231, 1297, 1763
BspACI CCGC 4 cut(s) 739, 1193, 1235, 1744
BspANI GGCC 1 cut(s) 1247
BspFNI CGCG 1 cut(s) 1237
BspLI GGNNCC 1 cut(s) 592
BspMAI CTGCAG 3 cut(s) 82, 738, 1245
BspPI GGATC 4 cut(s) 157, 470, 1195, 1226
BspQI GCTCTTC 2 cut(s) 395, 1065
BspT107I GGYRCC 1 cut(s) 590
BspTI CTTAAG 1 cut(s) 62
BspTNI GGTCTC 2 cut(s) 116, 512
BsrI ACTGG 3 cut(s) 1185, 1485, 1522
BssECI CCNNGG 2 cut(s) 579, 1714
BssMI GATC 8 cut(s) 149, 308, 475, 625, 1187, 1231, 1297, 1763
BssSI CACGAG 3 cut(s) 515, 636, 991
BssT1I CCWWGG 1 cut(s) 1714
Bst2BI CACGAG 3 cut(s) 515, 636, 991
Bst2UI CCWGG 1 cut(s) 580
Bst4CI ACNGT 2 cut(s) 701, 1018
Bst6I CTCTTC 5 cut(s) 395, 1036, 1065, 1374, 1638
BstAFI CTTAAG 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstC8I GCNNGC 2 cut(s) 1090, 1245
BstDEI CTNAG 6 cut(s) 549, 645, 916, 1107, 1128, 1211
BstF5I GGATG 2 cut(s) 211, 262
BstFNI CGCG 1 cut(s) 1237
BstKTI GATC 8 cut(s) 152, 311, 478, 628, 1190, 1234, 1300, 1766
BstMAI GTCTC 3 cut(s) 116, 512, 870
BstMBI GATC 8 cut(s) 149, 308, 475, 625, 1187, 1231, 1297, 1763
BstMWI GCNNNNNNNGC 3 cut(s) 850, 1121, 1190
BstNI CCWGG 1 cut(s) 580
BstNSI RCATGY 2 cut(s) 409, 426
BstSCI CCNGG 1 cut(s) 578
BstSFI CTRYAG 4 cut(s) 78, 734, 1241, 1305
BstUI CGCG 1 cut(s) 1237
BstV1I GCAGC 4 cut(s) 303, 562, 748, 1124
BstV2I GAAGAC 1 cut(s) 813
BstXI CCANNNNNNTGG 1 cut(s) 1721
BsuRI GGCC 1 cut(s) 1247
BtsCI GGATG 2 cut(s) 211, 262
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 4 cut(s) 75, 159, 172, 1638
Cac8I GCNNGC 2 cut(s) 1090, 1245
CseI GACGC 1 cut(s) 1226
Csp6I GTAC 4 cut(s) 391, 1515, 1648, 1665
CviAII CATG 7 cut(s) 133, 406, 423, 598, 893, 959, 1037
CviQI GTAC 4 cut(s) 391, 1515, 1648, 1665
DdeI CTNAG 6 cut(s) 549, 645, 916, 1107, 1128, 1211
DpnI GATC 8 cut(s) 151, 310, 477, 627, 1189, 1233, 1299, 1765
DpnII GATC 8 cut(s) 149, 308, 475, 625, 1187, 1231, 1297, 1763
DriI GACNNNNNGTC 1 cut(s) 1618
Eam1104I CTCTTC 5 cut(s) 395, 1036, 1065, 1374, 1638
Eam1105I GACNNNNNGTC 1 cut(s) 1618
EarI CTCTTC 5 cut(s) 395, 1036, 1065, 1374, 1638
Eco130I CCWWGG 1 cut(s) 1714
Eco31I GGTCTC 2 cut(s) 116, 512
Eco57I CTGAAG 2 cut(s) 825, 1662
EcoRI GAATTC 1 cut(s) 1737
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 1714
ErhI CCWWGG 1 cut(s) 1714
FaeI CATG 7 cut(s) 136, 409, 426, 601, 896, 962, 1040
FalI AAGNNNNNCTT 4 cut(s) 45, 77, 1556, 1588
FaqI GGGAC 2 cut(s) 579, 988
FatI CATG 7 cut(s) 132, 405, 422, 597, 892, 958, 1036
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 5 cut(s) 317, 576, 737, 740, 1113
FokI GGATG 2 cut(s) 198, 269
Fsp4HI GCNGC 5 cut(s) 317, 576, 737, 740, 1113
FspBI CTAG 7 cut(s) 107, 207, 228, 381, 1512, 1593, 1601
GluI GCNGC 5 cut(s) 317, 576, 737, 740, 1113
GsuI CTGGAG 2 cut(s) 138, 1827
HaeIII GGCC 1 cut(s) 1247
HgaI GACGC 1 cut(s) 1226
Hin1II CATG 7 cut(s) 136, 409, 426, 601, 896, 962, 1040
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HindIII AAGCTT 3 cut(s) 758, 1130, 1434
HinfI GANTC 4 cut(s) 337, 920, 1324, 1580
HphI GGTGA 3 cut(s) 706, 1532, 1672
Hpy166II GTNNAC 4 cut(s) 393, 697, 1021, 1638
Hpy188III TCNNGA 7 cut(s) 117, 246, 376, 461, 515, 1593, 1610
Hpy8I GTNNAC 4 cut(s) 393, 697, 1021, 1638
HpyAV CCTTC 3 cut(s) 410, 808, 991
HpyCH4III ACNGT 2 cut(s) 701, 1018
HpyF10VI GCNNNNNNNGC 3 cut(s) 850, 1121, 1190
HpyF3I CTNAG 6 cut(s) 549, 645, 916, 1107, 1128, 1211
Hsp92II CATG 7 cut(s) 136, 409, 426, 601, 896, 962, 1040
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 8 cut(s) 149, 308, 475, 625, 1187, 1231, 1297, 1763
LguI GCTCTTC 2 cut(s) 395, 1065
LmnI GCTCC 1 cut(s) 362
Lsp1109I GCAGC 4 cut(s) 303, 562, 748, 1124
LweI GCATC 3 cut(s) 73, 1792, 1813
MaeI CTAG 7 cut(s) 107, 207, 228, 381, 1512, 1593, 1601
MaeIII GTNAC 7 cut(s) 640, 749, 799, 878, 986, 1678, 1701
MalI GATC 8 cut(s) 151, 310, 477, 627, 1189, 1233, 1299, 1765
MboI GATC 8 cut(s) 149, 308, 475, 625, 1187, 1231, 1297, 1763
MfeI CAATTG 2 cut(s) 286, 795
MhlI GDGCHC 1 cut(s) 783
MmeI TCCRAC 3 cut(s) 633, 1452, 1608
MroXI GAANNNNTTC 2 cut(s) 673, 1292
MseI TTAA 9 cut(s) 20, 63, 180, 723, 834, 906, 980, 1140, 1542
MslI CAYNNNNRTG 4 cut(s) 536, 596, 860, 1098
MspA1I CMGCKG 2 cut(s) 739, 1193
MspCI CTTAAG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 580
MunI CAATTG 2 cut(s) 286, 795
MvaI CCWGG 1 cut(s) 580
MvnI CGCG 1 cut(s) 1237
MwoI GCNNNNNNNGC 3 cut(s) 850, 1121, 1190
NdeII GATC 8 cut(s) 149, 308, 475, 625, 1187, 1231, 1297, 1763
NlaIII CATG 7 cut(s) 136, 409, 426, 601, 896, 962, 1040
NlaIV GGNNCC 1 cut(s) 592
NmuCI GTSAC 3 cut(s) 878, 1678, 1701
NspI RCATGY 2 cut(s) 409, 426
PciSI GCTCTTC 2 cut(s) 395, 1065
PcsI WCGNNNNNNNCGW 1 cut(s) 1069
PdmI GAANNNNTTC 2 cut(s) 673, 1292
PfeI GAWTC 4 cut(s) 337, 920, 1324, 1580
PkrI GCNGC 5 cut(s) 318, 577, 738, 741, 1114
PshBI ATTAAT 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 1 cut(s) 592
PsrI GAACNNNNNNTAC 4 cut(s) 784, 816, 1254, 1286
PstI CTGCAG 3 cut(s) 82, 738, 1245
RsaI GTAC 4 cut(s) 392, 1516, 1649, 1666
RsaNI GTAC 4 cut(s) 391, 1515, 1648, 1665
RseI CAYNNNNRTG 4 cut(s) 536, 596, 860, 1098
SapI GCTCTTC 2 cut(s) 395, 1065
SaqAI TTAA 9 cut(s) 20, 63, 180, 723, 834, 906, 980, 1140, 1542
SatI GCNGC 5 cut(s) 317, 576, 737, 740, 1113
Sau3AI GATC 8 cut(s) 149, 308, 475, 625, 1187, 1231, 1297, 1763
ScaI AGTACT 1 cut(s) 1516
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 3 cut(s) 73, 1792, 1813
SfcI CTRYAG 4 cut(s) 78, 734, 1241, 1305
SmiMI CAYNNNNRTG 4 cut(s) 536, 596, 860, 1098
SmlI CTYRAG 3 cut(s) 62, 743, 1670
SmoI CTYRAG 3 cut(s) 62, 743, 1670
SsiI CCGC 4 cut(s) 739, 1193, 1235, 1744
SspI AATATT 1 cut(s) 96
SspMI CTAG 7 cut(s) 107, 207, 228, 381, 1512, 1593, 1601
StyD4I CCNGG 1 cut(s) 578
StyI CCWWGG 1 cut(s) 1714
TaaI ACNGT 2 cut(s) 701, 1018
TaqI TCGA 2 cut(s) 462, 1296
TaqII GACCGA 1 cut(s) 536
TatI WGTACW 3 cut(s) 390, 1514, 1647
TauI GCSGC 1 cut(s) 742
TfiI GAWTC 4 cut(s) 337, 920, 1324, 1580
Tru1I TTAA 9 cut(s) 20, 63, 180, 723, 834, 906, 980, 1140, 1542
Tru9I TTAA 9 cut(s) 20, 63, 180, 723, 834, 906, 980, 1140, 1542
TscAI CASTG 4 cut(s) 82, 159, 172, 1645
TseFI GTSAC 3 cut(s) 878, 1678, 1701
TseI GCWGC 4 cut(s) 316, 575, 736, 1112
Tsp45I GTSAC 3 cut(s) 878, 1678, 1701
TspDTI ATGAA 4 cut(s) 924, 931, 995, 1803
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 4 cut(s) 82, 159, 172, 1645
Vha464I CTTAAG 1 cut(s) 62
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 4 cut(s) 278, 932, 1340, 1737
XbaI TCTAGA 1 cut(s) 1592
XceI RCATGY 2 cut(s) 409, 426
XmnI GAANNNNTTC 2 cut(s) 673, 1292
XspI CTAG 7 cut(s) 107, 207, 228, 381, 1512, 1593, 1601
ZrmI AGTACT 1 cut(s) 1516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.