Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Reverse (-)

22334073 .. 22338526

Gene Structure 4454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCAGATTATCACGAGAACGATAAACACATTGAGATGTGGAAAACTAAGAAACTAATCAATGGACTTGAAGCTGCGAGGGGTAATGGCACCAGCATGATTTCTCTCATCATTCCTCCCCGTGATCAAATCGCTCGTGTTATTAAGATGTTGGATAATGAGTATGGAACTGCTTCAAATATCAAAAGCAGGGTGAACCGTCAGTCTGTTTTATGTGCAATTAAATCTGCTCTGCAGCGGCTCAAGGGTTACAACAAGCTTCCTCCTAATGGACTTGTGCTCTATATTGGAACAATTGTTACTGAAGACAGGAAGGAGAAAAAGATTGCAATTAATTTTGAGCCTTTCAAGCCCATCAACGTATCTCTTTACCTCTGTGACAACAAGTTCCATGTTGAAGCTCTTAATGAACTCTTAGAATCTGACGAGAAATTTGGTTTCATTGTCATAGATGGTCATGGTACTCTTTTTGGGACATTAAGTGGTAACACGAGGAAGGTGCTTCATAACTATACTGTTGACCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTTCGTTTTGCTCGTCTTGGAGAGGAGGCACGCCACAACTATGTTTCTAAGGCAGCAGAAAATGCCACTAAGCTTTTTATTAACCCTGCCACCAACAAGCCCAATGTTGCAGGATTAATACTGGCAGGATCAGCAGACTTCAAAATTGTGCTTAGTGGGTCAAACAAGTTTGATCCGCGTCTGCAGGCCAAAATACTGAATGTGGTGAGTGTTCGTTGTGGAGGAGAGAATGGTTTCGATCAGGCTATTGACTTGTCATCGAAGATTCTATCCAATGTGAAATTTGTGCAGGAGAAACGCTTGATGGAAAAATACTTTGAAGAGATTAGATTGGATACAGGAATGTATGTTTTTGGTTTAGATGATACACTAAAAGCTTTGGAGAGAGGTGCTGTGAAGATACTTATTGTGTCGGAAAGTCTGGAAATTAGTAGGTATGTGCTGAAAAACCCTAGTACTGGTGAGATTGTTGTCAAACATCTTAACAAAGAGCAGGAAAACAATAAGAGTTACTTTTGGGATTCTGCCAACTCTAGAGAACTAGATATTCAAGACAAGATGTCATTGTTGGAGTGGTTCACTGATGAGTACAAGGGGTTTGGTTGTACGCTTGAACTTGTCACCAACAAATCACAAGAGGGGTCACATTTCTGCCAAGGTTTTGGGGGCATTGGAGGAATTCTCCGCTACCAGCTTGATATGAGATCATTTGATGAGTTTTCTGATGATGAAGAAGTTTATGATGCTGGAGAAGTTTCTGATGATGCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

443

Amino Acids

49.74

Weight (kDa)

6.54

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	17 - 139	9.1e-51	eRF1 domain 1
eRF1_2	PF03464	144 - 277	9.8e-34	eRF1 domain 2
eRF1_3	PF03465	281 - 418	4.1e-29	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	736
AciI	CCGC	3 cut(s)	238, 734, 1243
AclWI	GGATC	2 cut(s)	694, 725
AcsI	RAATTY	3 cut(s)	431, 839, 1236
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	4 cut(s)	463, 1015, 1148, 1165
AfiI	CCNNNNNNNGG	2 cut(s)	269, 1016
AgsI	TTSAA	8 cut(s)	71, 177, 349, 398, 700, 878, 1109, 1172
AhdI	GACNNNNNGTC	1 cut(s)	1117
AluBI	AGCT	7 cut(s)	74, 259, 401, 557, 631, 935, 1252
AluI	AGCT	7 cut(s)	74, 259, 401, 557, 631, 935, 1252
Alw21I	GWGCWC	1 cut(s)	282
AlwI	GGATC	2 cut(s)	694, 725
AoxI	GGCC	1 cut(s)	744
ApeKI	GCWGC	3 cut(s)	74, 235, 611
ApoI	RAATTY	3 cut(s)	431, 839, 1236
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AseI	ATTAAT	2 cut(s)	333, 674
Asp700I	GAANNNNTTC	2 cut(s)	172, 791
AsuHPI	GGTGA	4 cut(s)	205, 775, 1031, 1171
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	3 cut(s)	14, 135, 490
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	61, 247, 623
BccI	CCATC	3 cut(s)	362, 446, 856
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	124
BfaI	CTAG	3 cut(s)	1011, 1092, 1100
BfmI	CTRYAG	2 cut(s)	233, 740
BfuI	GTATCC	1 cut(s)	886
BisI	GCNGC	4 cut(s)	75, 236, 239, 612
BlsI	GCNGC	4 cut(s)	76, 237, 240, 613
BmcAI	AGTACT	1 cut(s)	1015
BmeRI	GACNNNNNGTC	1 cut(s)	1117
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	2 cut(s)	1291, 1312
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	1224, 1256
BpmI	CTGGAG	1 cut(s)	1326
BpuEI	CTTGAG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	1213
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 1016
Bse1I	ACTGG	2 cut(s)	684, 1021
BseDI	CCNNGG	1 cut(s)	1213
BseLI	CCNNNNNNNGG	2 cut(s)	269, 1016
BseNI	ACTGG	2 cut(s)	684, 1021
BseRI	GAGGAG	3 cut(s)	558, 596, 795
BseXI	GCAGC	3 cut(s)	61, 247, 623
BsgI	GTGCAG	1 cut(s)	866
Bsh1236I	CGCG	1 cut(s)	736
BshFI	GGCC	1 cut(s)	746
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	269, 1016
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	124, 686, 730, 796, 1262
BspACI	CCGC	3 cut(s)	238, 734, 1243
BspANI	GGCC	1 cut(s)	746
BspFNI	CGCG	1 cut(s)	736
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	2 cut(s)	237, 744
BspPI	GGATC	2 cut(s)	694, 725
BspQI	GCTCTTC	1 cut(s)	564
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	684, 1021
BssECI	CCNNGG	1 cut(s)	1213
BssMI	GATC	5 cut(s)	124, 686, 730, 796, 1262
BssSI	CACGAG	3 cut(s)	14, 135, 490
BssT1I	CCWWGG	1 cut(s)	1213
Bst2BI	CACGAG	3 cut(s)	14, 135, 490
Bst4CI	ACNGT	2 cut(s)	200, 517
Bst6I	CTCTTC	3 cut(s)	535, 564, 873
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	589, 744
BstDEI	CTNAG	5 cut(s)	48, 415, 606, 627, 710
BstFNI	CGCG	1 cut(s)	736
BstKTI	GATC	5 cut(s)	127, 689, 733, 799, 1265
BstMBI	GATC	5 cut(s)	124, 686, 730, 796, 1262
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
BstSFI	CTRYAG	2 cut(s)	233, 740
BstUI	CGCG	1 cut(s)	736
BstV1I	GCAGC	3 cut(s)	61, 247, 623
BstV2I	GAAGAC	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	1220
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	746
BtsIMutI	CAGTG	1 cut(s)	1137
Cac8I	GCNNGC	2 cut(s)	589, 744
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	4 cut(s)	462, 1014, 1147, 1164
CviAII	CATG	4 cut(s)	97, 392, 458, 536
CviQI	GTAC	4 cut(s)	462, 1014, 1147, 1164
DdeI	CTNAG	5 cut(s)	48, 415, 606, 627, 710
DpnI	GATC	5 cut(s)	126, 688, 732, 798, 1264
DpnII	GATC	5 cut(s)	124, 686, 730, 796, 1262
DriI	GACNNNNNGTC	1 cut(s)	1117
Eam1104I	CTCTTC	3 cut(s)	535, 564, 873
Eam1105I	GACNNNNNGTC	1 cut(s)	1117
EarI	CTCTTC	3 cut(s)	535, 564, 873
Eco130I	CCWWGG	1 cut(s)	1213
Eco57I	CTGAAG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	1236
EcoT14I	CCWWGG	1 cut(s)	1213
ErhI	CCWWGG	1 cut(s)	1213
FaeI	CATG	4 cut(s)	100, 395, 461, 539
FalI	AAGNNNNNCTT	2 cut(s)	1055, 1087
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	4 cut(s)	96, 391, 457, 535
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	75, 236, 239, 612
Fsp4HI	GCNGC	4 cut(s)	75, 236, 239, 612
FspBI	CTAG	3 cut(s)	1011, 1092, 1100
GluI	GCNGC	4 cut(s)	75, 236, 239, 612
GsuI	CTGGAG	1 cut(s)	1326
HaeIII	GGCC	1 cut(s)	746
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	4 cut(s)	100, 395, 461, 539
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	3 cut(s)	257, 629, 933
HinfI	GANTC	3 cut(s)	419, 823, 1079
HphI	GGTGA	4 cut(s)	205, 775, 1031, 1171
Hpy166II	GTNNAC	3 cut(s)	196, 520, 1137
Hpy188I	TCNGA	4 cut(s)	424, 973, 1282, 1318
Hpy188III	TCNNGA	4 cut(s)	14, 980, 1092, 1109
Hpy8I	GTNNAC	3 cut(s)	196, 520, 1137
HpyAV	CCTTC	2 cut(s)	307, 490
HpyCH4III	ACNGT	2 cut(s)	200, 517
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	6 cut(s)	218, 235, 329, 668, 742, 847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
HpyF3I	CTNAG	5 cut(s)	48, 415, 606, 627, 710
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	100, 395, 461, 539
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	124, 686, 730, 796, 1262
LguI	GCTCTTC	1 cut(s)	564
Lsp1109I	GCAGC	3 cut(s)	61, 247, 623
LweI	GCATC	2 cut(s)	1291, 1312
MaeI	CTAG	3 cut(s)	1011, 1092, 1100
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	7 cut(s)	248, 298, 377, 485, 1067, 1177, 1200
MalI	GATC	5 cut(s)	126, 688, 732, 798, 1264
MboI	GATC	5 cut(s)	124, 686, 730, 796, 1262
MboII	GAAGA	7 cut(s)	317, 551, 552, 832, 890, 967, 1301
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	9 cut(s)	219, 294, 330, 334, 431, 702, 839, 984, 1236
MmeI	TCCRAC	3 cut(s)	132, 951, 1107
MroXI	GAANNNNTTC	2 cut(s)	172, 791
MseI	TTAA	8 cut(s)	144, 222, 333, 405, 479, 639, 674, 1041
MslI	CAYNNNNRTG	3 cut(s)	35, 95, 597
MspA1I	CMGCKG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	736
MwoI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
NdeII	GATC	5 cut(s)	124, 686, 730, 796, 1262
NlaIII	CATG	4 cut(s)	100, 395, 461, 539
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	3 cut(s)	377, 1177, 1200
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	2 cut(s)	172, 791
PfeI	GAWTC	3 cut(s)	419, 823, 1079
PkrI	GCNGC	4 cut(s)	76, 237, 240, 613
PshBI	ATTAAT	2 cut(s)	333, 674
PspN4I	GGNNCC	1 cut(s)	91
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PstI	CTGCAG	2 cut(s)	237, 744
RsaI	GTAC	4 cut(s)	463, 1015, 1148, 1165
RsaNI	GTAC	4 cut(s)	462, 1014, 1147, 1164
RseI	CAYNNNNRTG	3 cut(s)	35, 95, 597
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	8 cut(s)	144, 222, 333, 405, 479, 639, 674, 1041
SatI	GCNGC	4 cut(s)	75, 236, 239, 612
Sau3AI	GATC	5 cut(s)	124, 686, 730, 796, 1262
ScaI	AGTACT	1 cut(s)	1015
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	1291, 1312
SfcI	CTRYAG	2 cut(s)	233, 740
SmiMI	CAYNNNNRTG	3 cut(s)	35, 95, 597
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	9 cut(s)	219, 294, 330, 334, 431, 702, 839, 984, 1236
SsiI	CCGC	3 cut(s)	238, 734, 1243
SspMI	CTAG	3 cut(s)	1011, 1092, 1100
StyI	CCWWGG	1 cut(s)	1213
TaaI	ACNGT	2 cut(s)	200, 517
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	795, 818
TasI	AATT	9 cut(s)	219, 294, 330, 334, 431, 702, 839, 984, 1236
TatI	WGTACW	2 cut(s)	1013, 1146
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	3 cut(s)	419, 823, 1079
Tru1I	TTAA	8 cut(s)	144, 222, 333, 405, 479, 639, 674, 1041
Tru9I	TTAA	8 cut(s)	144, 222, 333, 405, 479, 639, 674, 1041
TscAI	CASTG	1 cut(s)	1144
TseFI	GTSAC	3 cut(s)	377, 1177, 1200
TseI	GCWGC	3 cut(s)	74, 235, 611
Tsp45I	GTSAC	3 cut(s)	377, 1177, 1200
TspDTI	ATGAA	4 cut(s)	423, 430, 494, 1302
TspRI	CASTG	1 cut(s)	1144
VspI	ATTAAT	2 cut(s)	333, 674
XapI	RAATTY	3 cut(s)	431, 839, 1236
XbaI	TCTAGA	1 cut(s)	1091
XmnI	GAANNNNTTC	2 cut(s)	172, 791
XspI	CTAG	3 cut(s)	1011, 1092, 1100
ZrmI	AGTACT	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.