Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

47636369 .. 47637699

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGCAGATTATCACGAGACCGATAAACACATTGAGATGTGGAAAACTAAGAAACTAATCAAGGGACTTGAAGCTGCGAGGGGTAATGGCACCAGCATGATTTCTCTCATCATTCCTCCCCGTGATCAAATCACTCGTGTTACTAAGATGTTGGATAATGAGTATGGAACTGCTTCAAATATCAAAAGCAGGGTGAACCGTCAGTCTGTTTTATGTGCAATTAAATCTGCTCTGCAGCGGCTCAAGGGTTACAACAAGCTTCCTCCTAATGGACTTCTGCTCTATATTGGAACAATTGTTACTGAAGACAGGAAGGAGAAAAAGATTGCAATTAATTTTGAGCCTTTCAAGCCCATCAATGTGTCACTTTACCTCTGTGACAACAAGTTCCATGTTGAAGCTCTTAATGAACTCTTGGAATCTGATGAGAAATTTGGTTTCATTGTCATAGATGGTCATGGTAGTCTTTTTGGGACATTAAGTGGTAACACGAGAAAGGTGCTTCATAACTATACTGTTGACCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTTCGTTTTGCTCGTCTTGGAGAGGAGGCACGCCACAACTATGTTTCTAAGGCAGCAGAAAATGCCACTAAGCTTTTTATTAACCCTGCCACCAACAAGCCCAATGTTGCAGGAATAATACTGGCAGGATCAGCGGACTTCAAAATTGTGCTTAGCCAAATACTGAATGTAGTGAGTGTTCGTTGTGGAGGAGAGAATGGTTTCGATCAGGCTATAGACTTGTCATCGAAGATTCTATCCAATGTGAAATTTGTGCAGGAGAAACGGTTGATGGAAAAATACTTTGAAGAGATTAGATTGGATACAGGAATGTATGTTTTTGGTTTAGATGATACACTAAAAGCTTTGGAGAGAGGTGCTGTGAAGATACTTATTGTGTCGGAAAGACTGGAAATTAGTAGGTATGAGCTGAAAAACTCTAGTACCGGTGAGATTGTTGTCAAACATCTTAACAAAGAGCAAGAAAACAATAAGAGCAACTTTTGGGATTCTGCCAACTCTAGAGAACTAGATATTCAAGACAAGATGTCATTGTTGGAGTGGTTCACTGACGAGTACAAGGGGTTTGGTTGTACGCTTGAGCTTGTCACCAACAAATCACAAGAGGGGTCACATTTCTGCCAAGGTTTTGGGGGCATTGGAGGAATTCTCCGCTACCAGCTTGATATGAGATCATTTGATGAGTTTTCTGATGATGAAGAAGTTTATGATGCTGGAGAAGTTTCTGATGATGCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

432

Amino Acids

48.58

Weight (kDa)

6.36

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	17 - 139	2.5e-50	eRF1 domain 1
eRF1_2	PF03464	144 - 263	3.4e-27	eRF1 domain 2
eRF1_3	PF03465	270 - 407	5.1e-29	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	3 cut(s)	238, 692, 1210
AclWI	GGATC	1 cut(s)	694
AcsI	RAATTY	3 cut(s)	431, 806, 1203
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	982, 1115, 1132
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgeI	ACCGGT	1 cut(s)	983
AgsI	TTSAA	7 cut(s)	71, 177, 349, 398, 700, 845, 1076
AhdI	GACNNNNNGTC	1 cut(s)	1084
AluBI	AGCT	9 cut(s)	74, 259, 401, 557, 631, 902, 967, 1141, 1219
AluI	AGCT	9 cut(s)	74, 259, 401, 557, 631, 902, 967, 1141, 1219
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	694
ApeKI	GCWGC	3 cut(s)	74, 235, 611
ApoI	RAATTY	3 cut(s)	431, 806, 1203
AseI	ATTAAT	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	983
Asp700I	GAANNNNTTC	2 cut(s)	172, 758
AsuHPI	GGTGA	3 cut(s)	205, 998, 1138
BaeI	ACNNNNGTAYC	2 cut(s)	964, 997
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	3 cut(s)	14, 135, 490
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	61, 247, 623
BccI	CCATC	3 cut(s)	362, 446, 823
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciVI	GTATCC	1 cut(s)	853
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	3 cut(s)	978, 1059, 1067
BfmI	CTRYAG	2 cut(s)	233, 771
BfuI	GTATCC	1 cut(s)	853
BisI	GCNGC	4 cut(s)	75, 236, 239, 612
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	4 cut(s)	76, 237, 240, 613
BmeRI	GACNNNNNGTC	1 cut(s)	1084
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	2 cut(s)	1258, 1279
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	1191, 1223
BpmI	CTGGAG	1 cut(s)	1293
Bpu1102I	GCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	2 cut(s)	227, 1157
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	1180
BsaWI	WCCGGW	1 cut(s)	983
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	983
Bse1I	ACTGG	2 cut(s)	684, 951
BseDI	CCNNGG	1 cut(s)	1180
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	684, 951
BseRI	GAGGAG	3 cut(s)	558, 596, 762
BseXI	GCAGC	3 cut(s)	61, 247, 623
BsgI	GTGCAG	1 cut(s)	833
BshNI	GGYRCC	1 cut(s)	89
BshTI	ACCGGT	1 cut(s)	983
BsiSI	CCGG	1 cut(s)	984
BslFI	GGGAC	2 cut(s)	78, 487
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	2 cut(s)	78, 487
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	124, 686, 763, 1229
Bsp1720I	GCTNAGC	1 cut(s)	710
BspACI	CCGC	3 cut(s)	238, 692, 1210
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	694
BspQI	GCTCTTC	1 cut(s)	564
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	983
BsrI	ACTGG	2 cut(s)	684, 951
BssAI	RCCGGY	1 cut(s)	983
BssECI	CCNNGG	1 cut(s)	1180
BssMI	GATC	4 cut(s)	124, 686, 763, 1229
BssSI	CACGAG	3 cut(s)	14, 135, 490
BssT1I	CCWWGG	1 cut(s)	1180
Bst2BI	CACGAG	3 cut(s)	14, 135, 490
Bst4CI	ACNGT	3 cut(s)	200, 517, 825
Bst6I	CTCTTC	3 cut(s)	535, 564, 840
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	5 cut(s)	48, 144, 606, 627, 710
BstKTI	GATC	4 cut(s)	127, 689, 766, 1232
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	4 cut(s)	124, 686, 763, 1229
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
BstSFI	CTRYAG	2 cut(s)	233, 771
BstV1I	GCAGC	3 cut(s)	61, 247, 623
BstV2I	GAAGAC	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	1187
BsuI	GTATCC	1 cut(s)	853
BtsIMutI	CAGTG	1 cut(s)	1104
Cac8I	GCNNGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	983
Csp6I	GTAC	3 cut(s)	981, 1114, 1131
CspAI	ACCGGT	1 cut(s)	983
CviAII	CATG	4 cut(s)	97, 392, 458, 536
CviQI	GTAC	3 cut(s)	981, 1114, 1131
DdeI	CTNAG	5 cut(s)	48, 144, 606, 627, 710
DpnI	GATC	4 cut(s)	126, 688, 765, 1231
DpnII	GATC	4 cut(s)	124, 686, 763, 1229
DriI	GACNNNNNGTC	1 cut(s)	1084
Eam1104I	CTCTTC	3 cut(s)	535, 564, 840
Eam1105I	GACNNNNNGTC	1 cut(s)	1084
EarI	CTCTTC	3 cut(s)	535, 564, 840
Eco130I	CCWWGG	1 cut(s)	1180
Eco31I	GGTCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	1203
EcoT14I	CCWWGG	1 cut(s)	1180
ErhI	CCWWGG	1 cut(s)	1180
FaeI	CATG	4 cut(s)	100, 395, 461, 539
FalI	AAGNNNNNCTT	2 cut(s)	1022, 1054
FaqI	GGGAC	2 cut(s)	78, 487
FatI	CATG	4 cut(s)	96, 391, 457, 535
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	75, 236, 239, 612
Fsp4HI	GCNGC	4 cut(s)	75, 236, 239, 612
FspBI	CTAG	3 cut(s)	978, 1059, 1067
GluI	GCNGC	4 cut(s)	75, 236, 239, 612
GsuI	CTGGAG	1 cut(s)	1293
HapII	CCGG	1 cut(s)	984
Hin1II	CATG	4 cut(s)	100, 395, 461, 539
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	3 cut(s)	257, 629, 900
HinfI	GANTC	3 cut(s)	419, 790, 1046
HpaII	CCGG	1 cut(s)	984
HphI	GGTGA	3 cut(s)	205, 998, 1138
Hpy166II	GTNNAC	3 cut(s)	196, 520, 1104
Hpy188I	TCNGA	4 cut(s)	424, 940, 1249, 1285
Hpy188III	TCNNGA	3 cut(s)	14, 1059, 1076
Hpy8I	GTNNAC	3 cut(s)	196, 520, 1104
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	3 cut(s)	200, 517, 825
HpyCH4V	TGCA	5 cut(s)	218, 235, 329, 668, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
HpyF3I	CTNAG	5 cut(s)	48, 144, 606, 627, 710
Hsp92II	CATG	4 cut(s)	100, 395, 461, 539
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	124, 686, 763, 1229
LguI	GCTCTTC	1 cut(s)	564
Lsp1109I	GCAGC	3 cut(s)	61, 247, 623
LweI	GCATC	2 cut(s)	1258, 1279
MaeI	CTAG	3 cut(s)	978, 1059, 1067
MaeIII	GTNAC	8 cut(s)	139, 248, 298, 363, 377, 485, 1144, 1167
MalI	GATC	4 cut(s)	126, 688, 765, 1231
MboI	GATC	4 cut(s)	124, 686, 763, 1229
MboII	GAAGA	7 cut(s)	317, 551, 552, 799, 857, 934, 1268
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	9 cut(s)	219, 294, 330, 334, 431, 702, 806, 951, 1203
MmeI	TCCRAC	3 cut(s)	132, 918, 1074
MroXI	GAANNNNTTC	2 cut(s)	172, 758
MseI	TTAA	6 cut(s)	222, 333, 405, 479, 639, 1008
MslI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
MspA1I	CMGCKG	2 cut(s)	238, 692
MspI	CCGG	1 cut(s)	984
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
NdeII	GATC	4 cut(s)	124, 686, 763, 1229
NlaIII	CATG	4 cut(s)	100, 395, 461, 539
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	4 cut(s)	363, 377, 1144, 1167
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	2 cut(s)	172, 758
PfeI	GAWTC	3 cut(s)	419, 790, 1046
PinAI	ACCGGT	1 cut(s)	983
PkrI	GCNGC	4 cut(s)	76, 237, 240, 613
PshBI	ATTAAT	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	91
PsrI	GAACNNNNNNTAC	4 cut(s)	283, 315, 720, 752
PstI	CTGCAG	1 cut(s)	237
RsaI	GTAC	3 cut(s)	982, 1115, 1132
RsaNI	GTAC	3 cut(s)	981, 1114, 1131
RseI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	6 cut(s)	222, 333, 405, 479, 639, 1008
SatI	GCNGC	4 cut(s)	75, 236, 239, 612
Sau3AI	GATC	4 cut(s)	124, 686, 763, 1229
SfaNI	GCATC	2 cut(s)	1258, 1279
SfcI	CTRYAG	2 cut(s)	233, 771
SmiMI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
SmlI	CTYRAG	2 cut(s)	242, 1136
SmoI	CTYRAG	2 cut(s)	242, 1136
Sse9I	AATT	9 cut(s)	219, 294, 330, 334, 431, 702, 806, 951, 1203
SsiI	CCGC	3 cut(s)	238, 692, 1210
SspMI	CTAG	3 cut(s)	978, 1059, 1067
StyI	CCWWGG	1 cut(s)	1180
TaaI	ACNGT	3 cut(s)	200, 517, 825
TaqI	TCGA	2 cut(s)	762, 785
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	9 cut(s)	219, 294, 330, 334, 431, 702, 806, 951, 1203
TatI	WGTACW	1 cut(s)	1113
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	3 cut(s)	419, 790, 1046
Tru1I	TTAA	6 cut(s)	222, 333, 405, 479, 639, 1008
Tru9I	TTAA	6 cut(s)	222, 333, 405, 479, 639, 1008
TscAI	CASTG	1 cut(s)	1111
TseFI	GTSAC	4 cut(s)	363, 377, 1144, 1167
TseI	GCWGC	3 cut(s)	74, 235, 611
Tsp45I	GTSAC	4 cut(s)	363, 377, 1144, 1167
TspDTI	ATGAA	4 cut(s)	423, 430, 494, 1269
TspRI	CASTG	1 cut(s)	1111
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	3 cut(s)	431, 806, 1203
XbaI	TCTAGA	1 cut(s)	1058
XmnI	GAANNNNTTC	2 cut(s)	172, 758
XspI	CTAG	3 cut(s)	978, 1059, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.