Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

26268501 .. 26268940

Gene Structure 440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1170100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAAGTGGTGGATGTTTCTTATGGAGGAGATGATGGCTTCCATATGGTTATTAAGTTCTCAGATACAGGAAAGTATGTAGTTGGCGTAGAGGACACGCTAAAGGCTTTAGAGATGGGAGCGGTTAAGGCATTTATTGTGTGGGAAAATCAGGAGTTAAATAGGTATGTGTTAAAGAACTCAAAGACCGATGAAATTGTTGTGAAACATTTCAACAAGAAGCAGAAGAAGATGTCACTGTTGGCATGGTTTGCTGGTGAGTACAAGTGTTTCGGTTGTGCTCTTGAGTTTGTCACCACCAAATCACAAGAGGGGTCACAGTTCTACCAAGGAATTGGGAGCATTGGAGGATTGTTACGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

122

Amino Acids

13.64

Weight (kDa)

8.47

Isoelectric Point (pI)

18.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_3	PF03465	18 - 121	1.1e-19	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	122
AciI	CCGC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	269, 286
Bbv12I	GWGCWC	1 cut(s)	283
BccI	CCATC	2 cut(s)	29, 109
BpuEI	CTTGAG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	240, 321
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 251
BstXI	CCANNNNNNTGG	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	2 cut(s)	39, 107
CviKI_1	RGCY	2 cut(s)	39, 107
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	1 cut(s)	249
FaiI	YATR	6 cut(s)	24, 45, 47, 78, 168, 247
FatI	CATG	1 cut(s)	245
FauNDI	CATATG	1 cut(s)	45
FokI	GGATG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	269, 286
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	152, 284
HpyCH4III	ACNGT	2 cut(s)	240, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 251
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	119, 339
LpnPI	CCDG	3 cut(s)	54, 137, 240
MaeIII	GTNAC	4 cut(s)	234, 292, 315, 354
MbiI	CCGCTC	1 cut(s)	122
MboII	GAAGA	2 cut(s)	238, 241
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	2 cut(s)	195, 333
MnlI	CCTC	4 cut(s)	20, 85, 304, 341
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	4 cut(s)	54, 126, 158, 173
MwoI	GCNNNNNNNGC	2 cut(s)	128, 251
NdeI	CATATG	1 cut(s)	45
NlaIII	CATG	1 cut(s)	249
NmuCI	GTSAC	3 cut(s)	234, 292, 315
PdmI	GAANNNNTTC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	4 cut(s)	54, 126, 158, 173
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	195, 333
SsiI	CCGC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	240, 321
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	195, 333
TatI	WGTACW	1 cut(s)	261
Tru1I	TTAA	4 cut(s)	54, 126, 158, 173
Tru9I	TTAA	4 cut(s)	54, 126, 158, 173
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	3 cut(s)	234, 292, 315
Tsp45I	GTSAC	3 cut(s)	234, 292, 315
TspDTI	ATGAA	2 cut(s)	17, 207
TspRI	CASTG	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.