Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Reverse (-)

38393314 .. 38394138

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0223700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAGGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCATCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACTTCTGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTACTAATTAGGCTTAGTATAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

274

Amino Acids

30.07

Weight (kDa)

6.3

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.8e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccIII	TCCGGA	1 cut(s)	793
AciI	CCGC	1 cut(s)	743
AcsI	RAATTY	1 cut(s)	526
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	2 cut(s)	328, 571
AfiI	CCNNNNNNNGG	3 cut(s)	329, 413, 664
AgsI	TTSAA	2 cut(s)	556, 640
AhlI	ACTAGT	2 cut(s)	314, 443
AjnI	CCWGG	3 cut(s)	92, 322, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	4 cut(s)	7, 410, 777, 799
AluI	AGCT	4 cut(s)	7, 410, 777, 799
Alw21I	GWGCWC	2 cut(s)	665, 779
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	661
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	793
AoxI	GGCC	1 cut(s)	404
ApaLI	GTGCAC	1 cut(s)	661
ApeKI	GCWGC	2 cut(s)	50, 293
ApoI	RAATTY	1 cut(s)	526
ArsI	GACNNNNNNTTYG	4 cut(s)	383, 415, 416, 448
AseI	ATTAAT	1 cut(s)	471
Asp700I	GAANNNNTTC	3 cut(s)	316, 513, 644
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	3 cut(s)	357, 404, 438
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	357, 438
AxyI	CCTNAGG	1 cut(s)	128
BaeGI	GKGCMC	2 cut(s)	306, 665
BamHI	GGATCC	4 cut(s)	123, 335, 383, 416
BanII	GRGCYC	2 cut(s)	262, 779
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	697
Bbv12I	GWGCWC	2 cut(s)	665, 779
BbvI	GCAGC	2 cut(s)	62, 280
BccI	CCATC	5 cut(s)	26, 204, 395, 452, 798
BceAI	ACGGC	2 cut(s)	72, 681
BciT130I	CCWGG	3 cut(s)	94, 324, 631
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 443
BfaI	CTAG	2 cut(s)	315, 444
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	51, 294
BlpI	GCTNAGC	1 cut(s)	778
BlsI	GCNGC	2 cut(s)	52, 295
Bme1390I	CCNGG	4 cut(s)	55, 94, 324, 631
Bme18I	GGWCC	2 cut(s)	357, 438
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	3 cut(s)	357, 404, 438
BmiI	GGNNCC	9 cut(s)	102, 125, 245, 337, 358, 385, 418, 439, 487
BmrFI	CCNGG	4 cut(s)	55, 94, 324, 631
BpiI	GAAGAC	1 cut(s)	697
BpmI	CTGGAG	2 cut(s)	93, 746
Bpu10I	CCTNAGC	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	778
BpuEI	CTTGAG	2 cut(s)	282, 793
BpuMI	CCSGG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	306, 753
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 413, 664
Bse1I	ACTGG	6 cut(s)	334, 367, 376, 505, 567, 763
Bse21I	CCTNAGG	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	793
BseBI	CCWGG	3 cut(s)	94, 324, 631
BseDI	CCNNGG	2 cut(s)	306, 753
BseGI	GGATG	3 cut(s)	37, 601, 790
BseLI	CCNNNNNNNGG	3 cut(s)	329, 413, 664
BseMII	CTCAG	4 cut(s)	142, 692, 752, 792
BseNI	ACTGG	6 cut(s)	334, 367, 376, 505, 567, 763
BseRI	GAGGAG	2 cut(s)	632, 635
BseSI	GKGCMC	2 cut(s)	306, 665
BseXI	GCAGC	2 cut(s)	62, 280
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	406
BsiHKAI	GWGCWC	2 cut(s)	665, 779
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	54, 794
BslI	CCNNNNNNNGG	3 cut(s)	329, 413, 664
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	262, 306, 665, 779
Bsp13I	TCCGGA	1 cut(s)	793
Bsp1720I	GCTNAGC	1 cut(s)	778
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	743
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	4 cut(s)	141, 693, 751, 791
BspEI	TCCGGA	1 cut(s)	793
BspLI	GGNNCC	9 cut(s)	102, 125, 245, 337, 358, 385, 418, 439, 487
BsrI	ACTGG	6 cut(s)	334, 367, 376, 505, 567, 763
BssECI	CCNNGG	2 cut(s)	306, 753
BssNI	GRCGYC	1 cut(s)	674
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	3 cut(s)	94, 324, 631
Bst4CI	ACNGT	2 cut(s)	207, 754
Bst6I	CTCTTC	2 cut(s)	272, 650
BstACI	GRCGYC	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	5 cut(s)	128, 701, 738, 778, 812
BstDSI	CCRYGG	2 cut(s)	306, 753
BstEII	GGTNACC	1 cut(s)	682
BstF5I	GGATG	3 cut(s)	37, 601, 790
BstHHI	GCGC	1 cut(s)	715
BstMAI	GTCTC	1 cut(s)	197
BstNI	CCWGG	3 cut(s)	94, 324, 631
BstPI	GGTNACC	1 cut(s)	682
BstSCI	CCNGG	4 cut(s)	53, 92, 322, 629
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	306, 665
BstV1I	GCAGC	2 cut(s)	62, 280
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	8 cut(s)	123, 133, 186, 335, 383, 416, 464, 757
BstYI	RGATCY	8 cut(s)	123, 133, 186, 335, 383, 416, 464, 757
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	406
BtgI	CCRYGG	2 cut(s)	306, 753
BtsCI	GGATG	3 cut(s)	37, 601, 790
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	408
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	3 cut(s)	357, 404, 438
Csp6I	GTAC	2 cut(s)	327, 570
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	2 cut(s)	327, 570
DdeI	CTNAG	5 cut(s)	128, 701, 738, 778, 812
DraI	TTTAAA	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	272, 650
EarI	CTCTTC	2 cut(s)	272, 650
Ecl136II	GAGCTC	1 cut(s)	777
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 779
Eco47I	GGWCC	2 cut(s)	357, 438
Eco53kI	GAGCTC	1 cut(s)	777
Eco81I	CCTNAGG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	682
EcoICRI	GAGCTC	1 cut(s)	777
EcoO65I	GGTNACC	1 cut(s)	682
EcoRII	CCWGG	3 cut(s)	92, 322, 629
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	262, 779
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	310
FaiI	YATR	4 cut(s)	210, 308, 538, 818
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	51, 294
FokI	GGATG	3 cut(s)	44, 588, 777
FriOI	GRGCYC	2 cut(s)	262, 779
Fsp4HI	GCNGC	2 cut(s)	51, 294
FspBI	CTAG	2 cut(s)	315, 444
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	2 cut(s)	51, 294
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	93, 746
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	2 cut(s)	54, 794
HhaI	GCGC	1 cut(s)	715
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HinfI	GANTC	2 cut(s)	178, 494
HpaII	CCGG	2 cut(s)	54, 794
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	3 cut(s)	360, 441, 663
Hpy188I	TCNGA	1 cut(s)	702
Hpy188III	TCNNGA	7 cut(s)	110, 182, 247, 263, 518, 772, 794
Hpy8I	GTNNAC	3 cut(s)	360, 441, 663
HpyAV	CCTTC	2 cut(s)	503, 700
HpyCH4III	ACNGT	2 cut(s)	207, 754
HpyCH4IV	ACGT	1 cut(s)	674
HpyCH4V	TGCA	4 cut(s)	202, 285, 609, 663
HpyF3I	CTNAG	5 cut(s)	128, 701, 738, 778, 812
HpySE526I	ACGT	1 cut(s)	674
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	713
Kpn2I	TCCGGA	1 cut(s)	793
LmnI	GCTCC	2 cut(s)	4, 796
Lsp1109I	GCAGC	2 cut(s)	62, 280
MaeI	CTAG	2 cut(s)	315, 444
MaeII	ACGT	1 cut(s)	674
MaeIII	GTNAC	3 cut(s)	682, 721, 745
MboII	GAAGA	4 cut(s)	289, 534, 637, 702
MflI	RGATCY	8 cut(s)	123, 133, 186, 335, 383, 416, 464, 757
MhlI	GDGCHC	4 cut(s)	262, 306, 665, 779
MluCI	AATT	5 cut(s)	349, 397, 430, 526, 804
MroI	TCCGGA	1 cut(s)	793
MroXI	GAANNNNTTC	3 cut(s)	316, 513, 644
MseI	TTAA	3 cut(s)	156, 471, 524
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	2 cut(s)	54, 794
MspR9I	CCNGG	4 cut(s)	55, 94, 324, 631
MvaI	CCWGG	3 cut(s)	94, 324, 631
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	306
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	9 cut(s)	102, 125, 245, 337, 358, 385, 418, 439, 487
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PdmI	GAANNNNTTC	3 cut(s)	316, 513, 644
PfeI	GAWTC	2 cut(s)	178, 494
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	52, 295
PshBI	ATTAAT	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	779
Psp6I	CCWGG	3 cut(s)	92, 322, 629
PspEI	GGTNACC	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	92, 322, 629
PspN4I	GGNNCC	9 cut(s)	102, 125, 245, 337, 358, 385, 418, 439, 487
PspPI	GGNCC	3 cut(s)	357, 404, 438
PsuI	RGATCY	8 cut(s)	123, 133, 186, 335, 383, 416, 464, 757
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	328, 571
RsaNI	GTAC	2 cut(s)	327, 570
SacI	GAGCTC	1 cut(s)	779
SaqAI	TTAA	3 cut(s)	156, 471, 524
SatI	GCNGC	2 cut(s)	51, 294
Sau96I	GGNCC	3 cut(s)	357, 404, 438
ScrFI	CCNGG	4 cut(s)	55, 94, 324, 631
SduI	GDGCHC	4 cut(s)	262, 306, 665, 779
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	2 cut(s)	357, 438
SlaI	CTCGAG	1 cut(s)	261
SmiI	ATTTAAAT	1 cut(s)	525
SmlI	CTYRAG	3 cut(s)	261, 297, 772
SmoI	CTYRAG	3 cut(s)	261, 297, 772
SpeI	ACTAGT	2 cut(s)	314, 443
Sse9I	AATT	5 cut(s)	349, 397, 430, 526, 804
SsiI	CCGC	1 cut(s)	743
SspMI	CTAG	2 cut(s)	315, 444
SstI	GAGCTC	1 cut(s)	779
StyD4I	CCNGG	4 cut(s)	53, 92, 322, 629
StyI	CCWWGG	1 cut(s)	306
SwaI	ATTTAAAT	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	207, 754
TaiI	ACGT	1 cut(s)	677
TaqI	TCGA	3 cut(s)	27, 262, 390
TasI	AATT	5 cut(s)	349, 397, 430, 526, 804
TatI	WGTACW	1 cut(s)	569
TfiI	GAWTC	2 cut(s)	178, 494
Tru1I	TTAA	3 cut(s)	156, 471, 524
Tru9I	TTAA	3 cut(s)	156, 471, 524
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	2 cut(s)	50, 293
TspDTI	ATGAA	3 cut(s)	290, 522, 525
TspRI	CASTG	1 cut(s)	367
Van91I	CCANNNNNTGG	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	661
VpaK11BI	GGWCC	2 cut(s)	357, 438
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	3 cut(s)	316, 513, 644
XspI	CTAG	2 cut(s)	315, 444
ZraI	GACGTC	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.