Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Reverse (-)

4396348 .. 4398193

Gene Structure 1846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCAGAAGAAGCGGATACGAACATCGAGATCTGGAAGATTAAGAAACTAATCAAGGGACTTGAATCAGCTAGAGGTAATGGAACGAGTATGATCTCTCTTATTATGCCTCCTCGTGATCAAGTATCTCGTGTCACAAAGATGCTTGGTGATGAATATGGAACTGCTTCAAACATTAAGAGTCGAGTCAATCGTCAATCTGTTTTGTCTGCCATTACTTCTGCTCAACAAAGGTTGAAGCTTTACAACAAGGTTCCTACTAATGGTCTTGTTCTCTATACCGGCACCATTGTTAATGATGACGGTAAAGAGAAGAAGGTGACGTTTGATTTCGAGCCCTTTAGGCCGATTAATGCTTCCTTGTACCTTTGTGACAACAAGTTCCATACTGAGGCATTGAACGAGCTTCTTGAGTCTGATGACAAGTTTGGTTTCATTGTTATGGATGGTAATGGGACACTGTTTGGAACTTTGAGTGGGAATACTAGAGAGGTTCTTCATAAGTTTACTGTTGATCTCCCGAAGAAGCACGGAAGAGGAGGACAGTCTGCACTTCGTTTTGCCCGTCTTAGGATGGAGAAGAGACACAATTATGTTAGGAAAACCGCTGAGCTTGCTACACAGTTTTACATCAATCCAGCTACGAGTCAGCCTAATGTCTCTGGTCTGATCCTTGCTGGTTCAGCTGATTTCAAAACTGAGCTCAGTCAATCAGAGTTGTTTGATCCTCGTCTTCAAGCTAAGATATTGAATGTTGTTGATGTTTCTTACGGAGGTGAAAACGGTTTCAACCAAGCGATTGAGCTGTCTGCTGAGATTCTATCCAATGTGAAGTTCATACAGGAGAAGAAACTGATTGGGAAGTACTTTGAGGAGATAAGTCAAGATACCGGGAAATACGTTTTCGGTGTGGAGGATACTCTAAAGGCTCTAGAAATGGGTGCTATCGAAACCCTTATCGTGTGGGAGAATCTGGACATAAACAGGTATGAGCTAAAGAACAGTACGACAGGAGAAATGGTGGTGAAACACTTTGGGAAAGATCAAGAGTCTGATACAAGCAACTTCCATGATTCAGAGACTAACGCGGAGCTAGAAGTACAGGAGAAGATGCCTCTACTCGAATGGTTTGCAAATGAGTACAAACGTTTCGGCTGCACTCTTGAGTTTGTGACTAACAAATCCCAAGAAGGGTCACAGTTTTGCAGAGGTTTTGGTGGGATTGGTGGTATGTTACGTTACCAGCTTGACATGAGGACATTTGATGAGTTATCAGATACTGAAGTTTACGAAGATTCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

434

Amino Acids

48.94

Weight (kDa)

5.25

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	15 - 137	1.2e-52	eRF1 domain 1
eRF1_2	PF03464	142 - 275	3.4e-42	eRF1 domain 2
eRF1_3	PF03465	279 - 416	1.2e-33	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	1 cut(s)	1088
AciI	CCGC	3 cut(s)	14, 606, 1088
AclI	AACGTT	1 cut(s)	1147
AclWI	GGATC	2 cut(s)	664, 719
AcuI	CTGAAG	1 cut(s)	1302
AfaI	GTAC	5 cut(s)	365, 866, 1006, 1101, 1142
AfiI	CCNNNNNNNGG	4 cut(s)	263, 391, 570, 1191
AgsI	TTSAA	8 cut(s)	65, 171, 238, 400, 694, 737, 751, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	3 cut(s)	577, 664, 1073
AlwI	GGATC	2 cut(s)	664, 719
AlwNI	CAGNNNCTG	1 cut(s)	1280
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	1155
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	892
AsuHPI	GGTGA	4 cut(s)	161, 331, 788, 1036
BaeI	ACNNNNGTAYC	2 cut(s)	1269, 1302
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	2 cut(s)	339, 705
BauI	CACGAG	2 cut(s)	114, 129
BbsI	GAAGAC	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	1142
BccI	CCATC	2 cut(s)	440, 568
BcgI	CGANNNNNNTGC	2 cut(s)	1112, 1146
BciVI	GTATCC	2 cut(s)	10, 910
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	892
BcoDI	GTCTC	3 cut(s)	577, 664, 1073
BfaI	CTAG	4 cut(s)	72, 486, 932, 1094
BfuI	GTATCC	2 cut(s)	10, 910
BglI	GCCNNNNNGGC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	1156
BlpI	GCTNAGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	1157
BmcAI	AGTACT	1 cut(s)	866
Bme1390I	CCNGG	1 cut(s)	892
BmiI	GGNNCC	2 cut(s)	255, 286
BmrFI	CCNGG	1 cut(s)	892
BmsI	GCATC	2 cut(s)	132, 1101
BpiI	GAAGAC	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	2 cut(s)	431, 1184
BpuMI	CCSGG	1 cut(s)	892
BsaXI	ACNNNNNCTCC	2 cut(s)	1005, 1035
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 391, 570, 1191
Bse118I	RCCGGY	1 cut(s)	281
BseGI	GGATG	2 cut(s)	451, 579
BseLI	CCNNNNNNNGG	4 cut(s)	263, 391, 570, 1191
BseMII	CTCAG	5 cut(s)	381, 600, 690, 718, 804
BseRI	GAGGAG	3 cut(s)	102, 552, 887
BseXI	GCAGC	1 cut(s)	1142
BsgI	GTGCAG	2 cut(s)	534, 1141
Bsh1236I	CGCG	1 cut(s)	1088
BshFI	GGCC	1 cut(s)	346
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	2 cut(s)	282, 891
BslFI	GGGAC	2 cut(s)	72, 469
BslI	CCNNNNNNNGG	4 cut(s)	263, 391, 570, 1191
BsmAI	GTCTC	3 cut(s)	577, 664, 1073
BsmFI	GGGAC	2 cut(s)	72, 469
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	339, 705
Bsp143I	GATC	7 cut(s)	30, 93, 118, 514, 669, 724, 1042
Bsp1720I	GCTNAGC	1 cut(s)	609
BspACI	CCGC	3 cut(s)	14, 606, 1088
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	5 cut(s)	382, 601, 691, 717, 805
BspFNI	CGCG	1 cut(s)	1088
BspLI	GGNNCC	2 cut(s)	255, 286
BspPI	GGATC	2 cut(s)	664, 719
BspT107I	GGYRCC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
BssMI	GATC	7 cut(s)	30, 93, 118, 514, 669, 724, 1042
BssSI	CACGAG	2 cut(s)	114, 129
Bst2BI	CACGAG	2 cut(s)	114, 129
Bst4CI	ACNGT	8 cut(s)	305, 462, 511, 546, 624, 785, 1004, 1200
Bst6I	CTCTTC	2 cut(s)	529, 575
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	7 cut(s)	390, 569, 609, 699, 704, 741, 813
BstF5I	GGATG	2 cut(s)	451, 579
BstFNI	CGCG	1 cut(s)	1088
BstKTI	GATC	7 cut(s)	33, 96, 121, 517, 672, 727, 1045
BstMAI	GTCTC	3 cut(s)	577, 664, 1073
BstMBI	GATC	7 cut(s)	30, 93, 118, 514, 669, 724, 1042
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 343, 614, 683
BstSCI	CCNGG	1 cut(s)	890
BstUI	CGCG	1 cut(s)	1088
BstV1I	GCAGC	1 cut(s)	1142
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuI	GTATCC	2 cut(s)	10, 910
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	451, 579
BtsIMutI	CAGTG	1 cut(s)	458
Cac8I	GCNNGC	1 cut(s)	615
CaiI	CAGNNNCTG	1 cut(s)	1280
Cfr10I	RCCGGY	1 cut(s)	281
Csp6I	GTAC	5 cut(s)	364, 865, 1005, 1100, 1141
CviAII	CATG	2 cut(s)	1070, 1252
CviQI	GTAC	5 cut(s)	364, 865, 1005, 1100, 1141
DdeI	CTNAG	7 cut(s)	390, 569, 609, 699, 704, 741, 813
DpnI	GATC	7 cut(s)	32, 95, 120, 516, 671, 726, 1044
DpnII	GATC	7 cut(s)	30, 93, 118, 514, 669, 724, 1042
Eam1104I	CTCTTC	2 cut(s)	529, 575
EarI	CTCTTC	2 cut(s)	529, 575
Ecl136II	GAGCTC	1 cut(s)	703
Eco24I	GRGCYC	2 cut(s)	339, 705
Eco53kI	GAGCTC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	1302
EcoICRI	GAGCTC	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	339, 705
FaeI	CATG	2 cut(s)	1073, 1255
FaqI	GGGAC	2 cut(s)	72, 469
FatI	CATG	2 cut(s)	1069, 1251
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	1156
FokI	GGATG	2 cut(s)	458, 586
FriOI	GRGCYC	2 cut(s)	339, 705
Fsp4HI	GCNGC	1 cut(s)	1156
FspBI	CTAG	4 cut(s)	72, 486, 932, 1094
GluI	GCNGC	1 cut(s)	1156
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	2 cut(s)	282, 891
Hin1II	CATG	2 cut(s)	1073, 1255
HindIII	AAGCTT	1 cut(s)	239
HpaII	CCGG	2 cut(s)	282, 891
HphI	GGTGA	4 cut(s)	161, 331, 788, 1036
Hpy166II	GTNNAC	2 cut(s)	507, 1288
Hpy188I	TCNGA	7 cut(s)	418, 669, 715, 1054, 1078, 1276, 1300
Hpy8I	GTNNAC	2 cut(s)	507, 1288
HpyAV	CCTTC	2 cut(s)	310, 1184
HpyCH4III	ACNGT	8 cut(s)	305, 462, 511, 546, 624, 785, 1004, 1200
HpyCH4IV	ACGT	4 cut(s)	323, 900, 1147, 1237
HpyCH4V	TGCA	4 cut(s)	551, 1133, 1158, 1206
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 343, 614, 683
HpyF3I	CTNAG	7 cut(s)	390, 569, 609, 699, 704, 741, 813
HpySE526I	ACGT	4 cut(s)	323, 900, 1147, 1237
Hsp92II	CATG	2 cut(s)	1073, 1255
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	30, 93, 118, 514, 669, 724, 1042
LmnI	GCTCC	1 cut(s)	1090
Lsp1109I	GCAGC	1 cut(s)	1142
LweI	GCATC	2 cut(s)	132, 1101
MaeI	CTAG	4 cut(s)	72, 486, 932, 1094
MaeII	ACGT	4 cut(s)	323, 900, 1147, 1237
MaeIII	GTNAC	7 cut(s)	133, 319, 371, 1171, 1194, 1233, 1238
MalI	GATC	7 cut(s)	32, 95, 120, 516, 671, 726, 1044
MboI	GATC	7 cut(s)	30, 93, 118, 514, 669, 724, 1042
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	2 cut(s)	339, 705
MluCI	AATT	1 cut(s)	589
MlyI	GAGTC	5 cut(s)	190, 195, 422, 655, 1058
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	5 cut(s)	42, 177, 294, 351, 1303
MslI	CAYNNNNRTG	3 cut(s)	140, 440, 591
MspA1I	CMGCKG	2 cut(s)	608, 686
MspI	CCGG	2 cut(s)	282, 891
MspR9I	CCNGG	1 cut(s)	892
MvnI	CGCG	1 cut(s)	1088
MwoI	GCNNNNNNNGC	4 cut(s)	11, 343, 614, 683
NciI	CCSGG	1 cut(s)	892
NdeII	GATC	7 cut(s)	30, 93, 118, 514, 669, 724, 1042
NlaIII	CATG	2 cut(s)	1073, 1255
NlaIV	GGNNCC	2 cut(s)	255, 286
NmuCI	GTSAC	5 cut(s)	133, 319, 371, 1171, 1194
PcsI	WCGNNNNNNNCGW	2 cut(s)	190, 562
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	5 cut(s)	65, 817, 970, 1073, 1295
PkrI	GCNGC	1 cut(s)	1157
PleI	GAGTC	5 cut(s)	189, 194, 421, 654, 1057
PpsI	GAGTC	5 cut(s)	189, 194, 421, 654, 1057
PshBI	ATTAAT	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	705
Psp1406I	AACGTT	1 cut(s)	1147
PspN4I	GGNNCC	2 cut(s)	255, 286
PstNI	CAGNNNCTG	1 cut(s)	1280
PsuI	RGATCY	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	5 cut(s)	365, 866, 1006, 1101, 1142
RsaNI	GTAC	5 cut(s)	364, 865, 1005, 1100, 1141
RseI	CAYNNNNRTG	3 cut(s)	140, 440, 591
SacI	GAGCTC	1 cut(s)	705
SaqAI	TTAA	5 cut(s)	42, 177, 294, 351, 1303
SatI	GCNGC	1 cut(s)	1156
Sau3AI	GATC	7 cut(s)	30, 93, 118, 514, 669, 724, 1042
ScaI	AGTACT	1 cut(s)	866
SchI	GAGTC	5 cut(s)	190, 195, 422, 655, 1058
ScrFI	CCNGG	1 cut(s)	892
SduI	GDGCHC	2 cut(s)	339, 705
SfaNI	GCATC	2 cut(s)	132, 1101
SmiMI	CAYNNNNRTG	3 cut(s)	140, 440, 591
SmlI	CTYRAG	2 cut(s)	410, 1163
SmoI	CTYRAG	2 cut(s)	410, 1163
Sse9I	AATT	1 cut(s)	589
SsiI	CCGC	3 cut(s)	14, 606, 1088
SspMI	CTAG	4 cut(s)	72, 486, 932, 1094
SstI	GAGCTC	1 cut(s)	705
StyD4I	CCNGG	1 cut(s)	890
TaaI	ACNGT	8 cut(s)	305, 462, 511, 546, 624, 785, 1004, 1200
TaiI	ACGT	4 cut(s)	326, 903, 1150, 1240
TaqI	TCGA	5 cut(s)	27, 184, 333, 948, 1122
TasI	AATT	1 cut(s)	589
TatI	WGTACW	3 cut(s)	864, 1099, 1140
TfiI	GAWTC	5 cut(s)	65, 817, 970, 1073, 1295
Tru1I	TTAA	5 cut(s)	42, 177, 294, 351, 1303
Tru9I	TTAA	5 cut(s)	42, 177, 294, 351, 1303
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	5 cut(s)	133, 319, 371, 1171, 1194
TseI	GCWGC	1 cut(s)	1155
Tsp45I	GTSAC	5 cut(s)	133, 319, 371, 1171, 1194
TspDTI	ATGAA	4 cut(s)	168, 424, 488, 826
TspGWI	ACGGA	2 cut(s)	546, 786
TspRI	CASTG	1 cut(s)	465
VspI	ATTAAT	1 cut(s)	351
XbaI	TCTAGA	1 cut(s)	931
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	4 cut(s)	72, 486, 932, 1094
ZrmI	AGTACT	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.