Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Reverse (-)

60311754 .. 60313067

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTCGGATGGTCAGGAGACTGATAAGAACATTGAGATATGGAAGATTAAGAAGCAGATCAAGGAACTTGAAGCTGCAAGGGGTAATGGCACCAGCATGATTTCTCTTATCATCCCTCCCCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGCGAAGAGTTTGGAACTGCTTCAAATATTAAGAGTAGAGTGAATCGTCAATCCGTTCTAGGGGCCATTACGTCTGCTCAGGAGCGGCTCAAGCGTTACAATAAGGTTCCTCCAAATGGGCTTGCTCTATATACAGGAACAATTGTTACTGATGATGGCAAGGAAAAGAAGAAGACAGTTGCTATTGAGCCTTTCAGGCCTATTAATGCATCTCTTTACCTCTGTGATAACAAGTTCCATATTGAAGCTCTGAATGAACTCTTGGAATCTGATGACAAATTTGGTTTCATTGTCATGGATGGTAATGGGACTCTTTTTGGGACACTAAGTGGCAACACAAGGGAGGTGCTTCATAAATTTAGTGTTGACCTGCCAAAGAAACACGGAAGAGGAGGACAATCAGCTCTTCGTTTTGCTCGTCTTCGAATGGAGAAGCGTCACAACTATGTTAGGAAGACAGCAGAGCTTGCCACACAGTTTTATATTAACCCTGCCACCAGCCAGCCGAATGTTTCAGGATTAATACTTGCTGGATCAGCTGACTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGTCTGCAGGCTAAAATTCTGAATCTGGTGGATGTTTCTTACGGAGGAGAGAATGGCTTTAATCAGGCTATTGAATTGTCAGCAGAGATCCTGTCCAATGTGAAGTTTATACAGGAGAAGAAGTTGATTGGAAAATACTTTGAGGAGATTAGTCAGGATACTGGCAAGTATGTTTTTGGTGTGGATGACACACTTAAAGCTTTGGAGATGGGCTCTGTTGAGATACTTATTGTGTGGGAAAGTCTGGATATTAATAGTACTGGGGAGGTCATTGTGAAGCATTTGAACAATGAGCAGGAGAACAATCAGAGCAACTTTCGTGATGCTGAGACTAATGCAGAATTAGAGGTTCAGGACAAGATGTCACTATTGGAGTGGTTTGCTAATGAGTACAGGCGGTTTGGGTGTTCTCTTGAGTTTGTGACCAACAAATCACAAGAGGGGTCACAGTTCTGCCGAGGCTTTGGCGGGATTGGAGGAATTCTCCGGTACCAGCTTGACATGAGGTCTTTCGATGAGTTTTCTGACGATGGTGAAGTTTATGATGATTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

431

Amino Acids

48.33

Weight (kDa)

5.26

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	17 - 139	1.7e-51	eRF1 domain 1
eRF1_2	PF03464	144 - 277	1e-42	eRF1 domain 2
eRF1_3	PF03465	281 - 411	5.7e-30	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
Acc65I	GGTACC	1 cut(s)	1224
AccB1I	GGYRCC	2 cut(s)	89, 1224
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	3 cut(s)	238, 1132, 1203
AclWI	GGATC	3 cut(s)	694, 725, 817
AcsI	RAATTY	4 cut(s)	431, 509, 750, 1215
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	3 cut(s)	994, 1127, 1226
AfiI	CCNNNNNNNGG	2 cut(s)	213, 269
AgsI	TTSAA	6 cut(s)	71, 177, 398, 700, 809, 1021
AhdI	GACNNNNNGTC	2 cut(s)	1096, 1240
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	8 cut(s)	74, 401, 557, 619, 692, 709, 935, 1231
AluI	AGCT	8 cut(s)	74, 401, 557, 619, 692, 709, 935, 1231
Alw26I	GTCTC	2 cut(s)	11, 1058
AlwI	GGATC	3 cut(s)	694, 725, 817
AoxI	GGCC	2 cut(s)	216, 350
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	4 cut(s)	431, 509, 750, 1215
AseI	ATTAAT	3 cut(s)	357, 674, 987
Asp700I	GAANNNNTTC	1 cut(s)	172
Asp718I	GGTACC	1 cut(s)	1224
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	1280
AsuII	TTCGAA	1 cut(s)	577
BanI	GGYRCC	2 cut(s)	89, 1224
BanII	GRGCYC	1 cut(s)	950
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	3 cut(s)	332, 566, 614
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	5 cut(s)	2, 302, 446, 937, 1259
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	11, 1058
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	886
BglI	GCCNNNNNGGC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	75, 239
BlsI	GCNGC	2 cut(s)	76, 240
BmcAI	AGTACT	1 cut(s)	994
BmeRI	GACNNNNNGTC	2 cut(s)	1096, 1240
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	4 cut(s)	91, 217, 261, 1226
BmrI	ACTGGG	1 cut(s)	1005
BmsI	GCATC	3 cut(s)	138, 371, 1048
BmuI	ACTGGG	1 cut(s)	1005
BpiI	GAAGAC	3 cut(s)	332, 566, 614
BplI	GAGNNNNNCTC	4 cut(s)	932, 964, 1203, 1235
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	577
BpuEI	CTTGAG	2 cut(s)	227, 1169
BsaJI	CCNNGG	1 cut(s)	1192
BsaWI	WCCGGW	1 cut(s)	1221
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 269
Bse1I	ACTGG	2 cut(s)	901, 1000
BseDI	CCNNGG	1 cut(s)	1192
BseGI	GGATG	5 cut(s)	13, 111, 457, 772, 925
BseLI	CCNNNNNNNGG	2 cut(s)	213, 269
BseMII	CTCAG	3 cut(s)	245, 696, 1053
BseNI	ACTGG	2 cut(s)	901, 1000
BseRI	GAGGAG	3 cut(s)	558, 795, 893
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	218, 352
BshNI	GGYRCC	2 cut(s)	89, 1224
BsiSI	CCGG	1 cut(s)	1222
BslFI	GGGAC	2 cut(s)	475, 487
BslI	CCNNNNNNNGG	2 cut(s)	213, 269
BsmAI	GTCTC	2 cut(s)	11, 1058
BsmFI	GGGAC	2 cut(s)	475, 487
BsnI	GGCC	2 cut(s)	218, 352
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	950
Bsp143I	GATC	5 cut(s)	57, 124, 686, 730, 822
BspACI	CCGC	3 cut(s)	238, 1132, 1203
BspANI	GGCC	2 cut(s)	218, 352
BspCNI	CTCAG	3 cut(s)	244, 697, 1054
BspLI	GGNNCC	4 cut(s)	91, 217, 261, 1226
BspMAI	CTGCAG	1 cut(s)	744
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	694, 725, 817
BspQI	GCTCTTC	1 cut(s)	564
BspT104I	TTCGAA	1 cut(s)	577
BspT107I	GGYRCC	2 cut(s)	89, 1224
BsrBI	CCGCTC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	901, 1000
BssECI	CCNNGG	1 cut(s)	1192
BssMI	GATC	5 cut(s)	57, 124, 686, 730, 822
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst4CI	ACNGT	3 cut(s)	331, 630, 1185
Bst6I	CTCTTC	3 cut(s)	153, 535, 564
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBI	TTCGAA	1 cut(s)	577
BstC8I	GCNNGC	4 cut(s)	276, 621, 656, 744
BstDEI	CTNAG	6 cut(s)	144, 231, 479, 705, 710, 1062
BstF5I	GGATG	5 cut(s)	13, 111, 457, 772, 925
BstKTI	GATC	5 cut(s)	60, 127, 689, 733, 825
BstMAI	GTCTC	2 cut(s)	11, 1058
BstMBI	GATC	5 cut(s)	57, 124, 686, 730, 822
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
BstSFI	CTRYAG	1 cut(s)	740
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	3 cut(s)	332, 566, 614
BstX2I	RGATCY	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	822
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	2 cut(s)	218, 352
BtsCI	GGATG	5 cut(s)	13, 111, 457, 772, 925
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	4 cut(s)	276, 621, 656, 744
Cfr13I	GGNCC	1 cut(s)	216
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	993, 1126, 1225
CviAII	CATG	3 cut(s)	97, 448, 1237
CviQI	GTAC	3 cut(s)	993, 1126, 1225
DdeI	CTNAG	6 cut(s)	144, 231, 479, 705, 710, 1062
DpnI	GATC	5 cut(s)	59, 126, 688, 732, 824
DpnII	GATC	5 cut(s)	57, 124, 686, 730, 822
DraIII	CACNNNGTG	1 cut(s)	482
DriI	GACNNNNNGTC	2 cut(s)	1096, 1240
Eam1104I	CTCTTC	3 cut(s)	153, 535, 564
Eam1105I	GACNNNNNGTC	2 cut(s)	1096, 1240
EarI	CTCTTC	3 cut(s)	153, 535, 564
Eco147I	AGGCCT	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	950
EcoRI	GAATTC	1 cut(s)	1215
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	950
FaeI	CATG	3 cut(s)	100, 451, 1240
FaqI	GGGAC	2 cut(s)	475, 487
FatI	CATG	3 cut(s)	96, 447, 1236
FauI	CCCGC	1 cut(s)	1196
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	75, 239
FokI	GGATG	5 cut(s)	20, 98, 464, 779, 932
FriOI	GRGCYC	1 cut(s)	950
Fsp4HI	GCNGC	2 cut(s)	75, 239
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	2 cut(s)	75, 239
HaeIII	GGCC	2 cut(s)	218, 352
HapII	CCGG	1 cut(s)	1222
HgaI	GACGC	1 cut(s)	578
Hin1II	CATG	3 cut(s)	100, 451, 1240
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	933
HinfI	GANTC	5 cut(s)	196, 419, 463, 757, 1283
HpaII	CCGG	1 cut(s)	1222
HphI	GGTGA	1 cut(s)	1280
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	8 cut(s)	7, 405, 424, 721, 756, 1044, 1261, 1288
Hpy188III	TCNNGA	8 cut(s)	14, 233, 669, 890, 980, 1055, 1088, 1148
Hpy8I	GTNNAC	1 cut(s)	520
HpyCH4III	ACNGT	3 cut(s)	331, 630, 1185
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	77, 362, 742, 1073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
HpyF3I	CTNAG	6 cut(s)	144, 231, 479, 705, 710, 1062
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	100, 451, 1240
KpnI	GGTACC	1 cut(s)	1228
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	57, 124, 686, 730, 822
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	3 cut(s)	138, 371, 1048
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	7 cut(s)	139, 248, 298, 590, 1098, 1156, 1179
MalI	GATC	5 cut(s)	59, 126, 688, 732, 824
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	5 cut(s)	57, 124, 686, 730, 822
MboII	GAAGA	9 cut(s)	55, 170, 334, 337, 551, 552, 566, 619, 865
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	822
MhlI	GDGCHC	1 cut(s)	950
MluCI	AATT	7 cut(s)	294, 431, 509, 750, 809, 1076, 1215
MlyI	GAGTC	1 cut(s)	457
Mph1103I	ATGCAT	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	8 cut(s)	48, 183, 357, 639, 674, 795, 930, 987
MslI	CAYNNNNRTG	3 cut(s)	95, 446, 597
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	1 cut(s)	1222
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
NdeII	GATC	5 cut(s)	57, 124, 686, 730, 822
NlaIII	CATG	3 cut(s)	100, 451, 1240
NlaIV	GGNNCC	4 cut(s)	91, 217, 261, 1226
NmeAIII	GCCGAG	1 cut(s)	1217
NmuCI	GTSAC	4 cut(s)	590, 1098, 1156, 1179
NsiI	ATGCAT	1 cut(s)	364
NspV	TTCGAA	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	4 cut(s)	196, 419, 757, 1283
PkrI	GCNGC	2 cut(s)	76, 240
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PshBI	ATTAAT	3 cut(s)	357, 674, 987
PspN4I	GGNNCC	4 cut(s)	91, 217, 261, 1226
PspPI	GGNCC	1 cut(s)	216
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	822
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	3 cut(s)	994, 1127, 1226
RsaNI	GTAC	3 cut(s)	993, 1126, 1225
RseI	CAYNNNNRTG	3 cut(s)	95, 446, 597
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	8 cut(s)	48, 183, 357, 639, 674, 795, 930, 987
SatI	GCNGC	2 cut(s)	75, 239
Sau3AI	GATC	5 cut(s)	57, 124, 686, 730, 822
Sau96I	GGNCC	1 cut(s)	216
ScaI	AGTACT	1 cut(s)	994
SchI	GAGTC	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	950
SfaNI	GCATC	3 cut(s)	138, 371, 1048
SfcI	CTRYAG	1 cut(s)	740
SfuI	TTCGAA	1 cut(s)	577
SmiMI	CAYNNNNRTG	3 cut(s)	95, 446, 597
SmlI	CTYRAG	2 cut(s)	242, 1148
SmoI	CTYRAG	2 cut(s)	242, 1148
Sse9I	AATT	7 cut(s)	294, 431, 509, 750, 809, 1076, 1215
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	238, 1132, 1203
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	331, 630, 1185
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	577, 1248
TasI	AATT	7 cut(s)	294, 431, 509, 750, 809, 1076, 1215
TatI	WGTACW	2 cut(s)	992, 1125
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	4 cut(s)	196, 419, 757, 1283
Tru1I	TTAA	8 cut(s)	48, 183, 357, 639, 674, 795, 930, 987
Tru9I	TTAA	8 cut(s)	48, 183, 357, 639, 674, 795, 930, 987
TseFI	GTSAC	4 cut(s)	590, 1098, 1156, 1179
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	4 cut(s)	590, 1098, 1156, 1179
TspDTI	ATGAA	3 cut(s)	423, 430, 494
TspGWI	ACGGA	3 cut(s)	196, 552, 792
VspI	ATTAAT	3 cut(s)	357, 674, 987
XapI	RAATTY	4 cut(s)	431, 509, 750, 1215
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	994
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.