Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006662.1

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

50046 .. 51974

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006662.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

atggcagattatcacgagaccgataaacacattgagatgtggaaaactaagaaactaatcaagggacttgaagctgcgaggggtaatggcaccagcatgatttctctcatcattcctccccgtgatcaaatcactcgtgttactaagatgttggataatgagtatggaactgcttcaaatatcaaaagcagggtgaaccgtcagtctgttttatgtgcaattaaatctgctctgcagcggctcaagggttacaacaagcttcctcctaatggacttgtgctctatattggaacaattgttactgaagacaggaaggagaaaaagattgcaattaattttgagcctttcaagcccatcaatgtgtcactttacctctgtgacaacaagttccatgttgaagctcttaatgaactcttggaatctgatgagaaatttggtttcattgtcatagatggtcatggtagtctttttgggacattaagtggtaacacgagaaaggtgcttcataactatactgttgacctcccaaagaaacatggaagaggagggcaatcagctcttcgttttgctcgtcttggagaggaggcacgccacaactatgtttctaaggcagcagaaaatgccactaagctttttattaaccctgccaccaacaagcccaatgttgcaggaataatactggcaggatcagcggacttcaaaattgtgcttagtgggtcagacaagtttgatccgcgtctgcaggccaaaatactgaatgtagtgagtgttcgttgtggaggagagaatggtttcgatcaggctatagacttgtcatcgaagattctatccaatgtgaaatttgtgcaggagaaacggttgatggaaaaatactttgaagagattagattggatacaggaatgtatgtttttggtttagatgatacactaaaagctttggagagaggtgctgtgaagatacttattgtgtcggaaagactggaaattagtaggtatgagctgaaaaactctagtaccggtgagattgttgtcaaacatcttaacaaagagcaagaaaacaataagagcaacttttgggattctgccaactctagagaactagatattcaagacaagatgtcattgttggagtggttcactgacgagtacaaggggtttggttgtacgcttgagcttgtcaccaacaaatcacaagaggggtcacatttctgccaaggttttgggggcattggaggaattctccgctaccagcttgatatgagatcatttgatgagttttctgatgatgaagaagatgctggggatgaaaaaccctgcaccagcggccatggagttgtggctgctgcttctgctgctgtggctcctgagtggtgctcaaagaaaataacaggcttgatcaaggacattacattttgtgatctggacaagcttaatgttgggattccatctggatcacaaaaaagtggttatgaaagagtatccacacagggagttgcggttgctgctgctaccaaggagccttcaaaatgtttctcaggcttgatcaaggtcattacaactgattctcaaaagtgcgatgcggtgaattcttctggatcaagaaaatctggcggtggaagagcacgcaccagtgtactggaaggggctgaagagatcaatcgtctagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

556

Amino Acids

61.29

Weight (kDa)

8.16

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	736
AciI	CCGC	8 cut(s)	238, 692, 734, 1243, 1323, 1496, 1580, 1611
AclWI	GGATC	4 cut(s)	694, 725, 1459, 1603
AcoI	YGGCCR	1 cut(s)	1324
AcsI	RAATTY	4 cut(s)	431, 839, 1236, 1585
AcuI	CTGAAG	2 cut(s)	324, 1668
AfaI	GTAC	4 cut(s)	1015, 1148, 1165, 1635
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgeI	ACCGGT	1 cut(s)	1016
AgsI	TTSAA	8 cut(s)	71, 177, 349, 398, 700, 878, 1109, 1524
AhdI	GACNNNNNGTC	1 cut(s)	1117
Alw21I	GWGCWC	3 cut(s)	282, 1376, 1624
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	4 cut(s)	694, 725, 1459, 1603
AoxI	GGCC	2 cut(s)	744, 1324
ApeKI	GCWGC	8 cut(s)	74, 235, 611, 1340, 1343, 1352, 1502, 1505
ApoI	RAATTY	4 cut(s)	431, 839, 1236, 1585
AseI	ATTAAT	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	1016
Asp700I	GAANNNNTTC	2 cut(s)	172, 791
AsuHPI	GGTGA	4 cut(s)	205, 1031, 1171, 1594
BaeI	ACNNNNGTAYC	2 cut(s)	997, 1030
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	3 cut(s)	14, 135, 490
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	3 cut(s)	282, 1376, 1624
BbvI	GCAGC	8 cut(s)	61, 247, 623, 1327, 1330, 1339, 1489, 1492
BccI	CCATC	4 cut(s)	362, 446, 856, 1453
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciVI	GTATCC	2 cut(s)	886, 1489
BclI	TGATCA	3 cut(s)	124, 1395, 1542
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	4 cut(s)	1011, 1092, 1100, 1664
BfmI	CTRYAG	3 cut(s)	233, 740, 804
BfuI	GTATCC	2 cut(s)	886, 1489
BmeRI	GACNNNNNGTC	1 cut(s)	1117
BmiI	GGNNCC	3 cut(s)	91, 1362, 1518
BmsI	GCATC	2 cut(s)	1285, 1567
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	4 cut(s)	1224, 1256, 1358, 1390
BpuEI	CTTGAG	2 cut(s)	227, 1190
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	1213, 1327, 1512
BsaWI	WCCGGW	1 cut(s)	1016
BsaXI	ACNNNNNCTCC	4 cut(s)	842, 872, 1482, 1512
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	4 cut(s)	684, 984, 1629, 1641
BseDI	CCNNGG	3 cut(s)	1213, 1327, 1512
BseGI	GGATG	1 cut(s)	1309
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	1356, 1548
BseNI	ACTGG	4 cut(s)	684, 984, 1629, 1641
BseRI	GAGGAG	3 cut(s)	558, 596, 795
BseXI	GCAGC	8 cut(s)	61, 247, 623, 1327, 1330, 1339, 1489, 1492
BseYI	CCCAGC	1 cut(s)	1298
BsgI	GTGCAG	2 cut(s)	866, 1300
Bsh1236I	CGCG	1 cut(s)	736
BshFI	GGCC	2 cut(s)	746, 1326
BshNI	GGYRCC	1 cut(s)	89
BshTI	ACCGGT	1 cut(s)	1016
BsiHKAI	GWGCWC	3 cut(s)	282, 1376, 1624
BsiSI	CCGG	1 cut(s)	1017
BslFI	GGGAC	2 cut(s)	78, 487
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	2 cut(s)	78, 487
BsnI	GGCC	2 cut(s)	746, 1326
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	282, 1376, 1624
Bsp19I	CCATGG	1 cut(s)	1327
BspACI	CCGC	8 cut(s)	238, 692, 734, 1243, 1323, 1496, 1580, 1611
BspANI	GGCC	2 cut(s)	746, 1326
BspCNI	CTCAG	2 cut(s)	1357, 1547
BspFNI	CGCG	1 cut(s)	736
BspLI	GGNNCC	3 cut(s)	91, 1362, 1518
BspMAI	CTGCAG	2 cut(s)	237, 744
BspPI	GGATC	4 cut(s)	694, 725, 1459, 1603
BspQI	GCTCTTC	2 cut(s)	564, 1612
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	4 cut(s)	684, 984, 1629, 1641
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	3 cut(s)	1213, 1327, 1512
BssSI	CACGAG	3 cut(s)	14, 135, 490
BssT1I	CCWWGG	3 cut(s)	1213, 1327, 1512
Bst2BI	CACGAG	3 cut(s)	14, 135, 490
Bst4CI	ACNGT	3 cut(s)	200, 517, 858
Bst6I	CTCTTC	5 cut(s)	535, 564, 873, 1612, 1644
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	3 cut(s)	589, 744, 1624
BstDEI	CTNAG	7 cut(s)	48, 144, 606, 627, 710, 1365, 1534
BstDSI	CCRYGG	1 cut(s)	1327
BstF5I	GGATG	1 cut(s)	1309
BstFNI	CGCG	1 cut(s)	736
BstMAI	GTCTC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	8 cut(s)	349, 620, 689, 1323, 1349, 1352, 1358, 1502
BstSFI	CTRYAG	3 cut(s)	233, 740, 804
BstUI	CGCG	1 cut(s)	736
BstV1I	GCAGC	8 cut(s)	61, 247, 623, 1327, 1330, 1339, 1489, 1492
BstV2I	GAAGAC	1 cut(s)	312
BstXI	CCANNNNNNTGG	2 cut(s)	1220, 1636
BsuI	GTATCC	2 cut(s)	886, 1489
BsuRI	GGCC	2 cut(s)	746, 1326
BtgI	CCRYGG	1 cut(s)	1327
BtgZI	GCGATG	1 cut(s)	1590
BtsCI	GGATG	1 cut(s)	1309
BtsIMutI	CAGTG	2 cut(s)	1137, 1636
Cac8I	GCNNGC	3 cut(s)	589, 744, 1624
Cfr10I	RCCGGY	1 cut(s)	1016
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	4 cut(s)	1014, 1147, 1164, 1634
CspAI	ACCGGT	1 cut(s)	1016
CviAII	CATG	5 cut(s)	97, 392, 458, 536, 1328
CviQI	GTAC	4 cut(s)	1014, 1147, 1164, 1634
DdeI	CTNAG	7 cut(s)	48, 144, 606, 627, 710, 1365, 1534
DriI	GACNNNNNGTC	1 cut(s)	1117
EaeI	YGGCCR	1 cut(s)	1324
Eam1104I	CTCTTC	5 cut(s)	535, 564, 873, 1612, 1644
Eam1105I	GACNNNNNGTC	1 cut(s)	1117
EarI	CTCTTC	5 cut(s)	535, 564, 873, 1612, 1644
Eco130I	CCWWGG	3 cut(s)	1213, 1327, 1512
Eco31I	GGTCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	324, 1668
EcoRI	GAATTC	2 cut(s)	1236, 1585
EcoT14I	CCWWGG	3 cut(s)	1213, 1327, 1512
ErhI	CCWWGG	3 cut(s)	1213, 1327, 1512
FaeI	CATG	5 cut(s)	100, 395, 461, 539, 1331
FalI	AAGNNNNNCTT	2 cut(s)	1055, 1087
FaqI	GGGAC	2 cut(s)	78, 487
FatI	CATG	5 cut(s)	96, 391, 457, 535, 1327
FbaI	TGATCA	3 cut(s)	124, 1395, 1542
FokI	GGATG	1 cut(s)	1316
FspBI	CTAG	4 cut(s)	1011, 1092, 1100, 1664
GsaI	CCCAGC	1 cut(s)	1302
HaeIII	GGCC	2 cut(s)	746, 1326
HapII	CCGG	1 cut(s)	1017
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	100, 395, 461, 539, 1331
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	4 cut(s)	257, 629, 933, 1427
HinfI	GANTC	5 cut(s)	419, 823, 1079, 1441, 1562
HpaII	CCGG	1 cut(s)	1017
HphI	GGTGA	4 cut(s)	205, 1031, 1171, 1594
Hpy166II	GTNNAC	4 cut(s)	196, 520, 1137, 1634
Hpy188I	TCNGA	4 cut(s)	424, 721, 973, 1282
Hpy188III	TCNNGA	8 cut(s)	14, 1092, 1109, 1364, 1421, 1449, 1593, 1599
Hpy8I	GTNNAC	4 cut(s)	196, 520, 1137, 1634
HpyAV	CCTTC	3 cut(s)	307, 1530, 1634
HpyCH4III	ACNGT	3 cut(s)	200, 517, 858
HpyCH4V	TGCA	7 cut(s)	218, 235, 329, 668, 742, 847, 1317
HpyF10VI	GCNNNNNNNGC	8 cut(s)	349, 620, 689, 1323, 1349, 1352, 1358, 1502
HpyF3I	CTNAG	7 cut(s)	48, 144, 606, 627, 710, 1365, 1534
Hsp92II	CATG	5 cut(s)	100, 395, 461, 539, 1331
Ksp22I	TGATCA	3 cut(s)	124, 1395, 1542
LguI	GCTCTTC	2 cut(s)	564, 1612
LmnI	GCTCC	2 cut(s)	1366, 1516
Lsp1109I	GCAGC	8 cut(s)	61, 247, 623, 1327, 1330, 1339, 1489, 1492
LweI	GCATC	2 cut(s)	1285, 1567
MaeI	CTAG	4 cut(s)	1011, 1092, 1100, 1664
MaeIII	GTNAC	8 cut(s)	139, 248, 298, 363, 377, 485, 1177, 1200
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	3 cut(s)	282, 1376, 1624
MmeI	TCCRAC	3 cut(s)	132, 951, 1107
MroXI	GAANNNNTTC	2 cut(s)	172, 791
MseI	TTAA	7 cut(s)	222, 333, 405, 479, 639, 1041, 1431
MslI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
MspA1I	CMGCKG	3 cut(s)	238, 692, 1323
MspI	CCGG	1 cut(s)	1017
MunI	CAATTG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	736
MwoI	GCNNNNNNNGC	8 cut(s)	349, 620, 689, 1323, 1349, 1352, 1358, 1502
NcoI	CCATGG	1 cut(s)	1327
NlaIII	CATG	5 cut(s)	100, 395, 461, 539, 1331
NlaIV	GGNNCC	3 cut(s)	91, 1362, 1518
NmuCI	GTSAC	4 cut(s)	363, 377, 1177, 1200
PciSI	GCTCTTC	2 cut(s)	564, 1612
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	2 cut(s)	172, 791
PfeI	GAWTC	5 cut(s)	419, 823, 1079, 1441, 1562
PinAI	ACCGGT	1 cut(s)	1016
PshBI	ATTAAT	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	1298
PspN4I	GGNNCC	3 cut(s)	91, 1362, 1518
PsrI	GAACNNNNNNTAC	4 cut(s)	283, 315, 753, 785
PstI	CTGCAG	2 cut(s)	237, 744
RsaI	GTAC	4 cut(s)	1015, 1148, 1165, 1635
RsaNI	GTAC	4 cut(s)	1014, 1147, 1164, 1634
RseI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
SapI	GCTCTTC	2 cut(s)	564, 1612
SaqAI	TTAA	7 cut(s)	222, 333, 405, 479, 639, 1041, 1431
SduI	GDGCHC	3 cut(s)	282, 1376, 1624
SfaNI	GCATC	2 cut(s)	1285, 1567
SfcI	CTRYAG	3 cut(s)	233, 740, 804
SmiMI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
SmlI	CTYRAG	2 cut(s)	242, 1169
SmoI	CTYRAG	2 cut(s)	242, 1169
SsiI	CCGC	8 cut(s)	238, 692, 734, 1243, 1323, 1496, 1580, 1611
SspMI	CTAG	4 cut(s)	1011, 1092, 1100, 1664
StyI	CCWWGG	3 cut(s)	1213, 1327, 1512
TaaI	ACNGT	3 cut(s)	200, 517, 858
TaqI	TCGA	2 cut(s)	795, 818
TaqII	GACCGA	1 cut(s)	35
TatI	WGTACW	2 cut(s)	1146, 1633
TauI	GCSGC	2 cut(s)	241, 1326
TfiI	GAWTC	5 cut(s)	419, 823, 1079, 1441, 1562
Tru1I	TTAA	7 cut(s)	222, 333, 405, 479, 639, 1041, 1431
Tru9I	TTAA	7 cut(s)	222, 333, 405, 479, 639, 1041, 1431
TscAI	CASTG	2 cut(s)	1144, 1636
TseFI	GTSAC	4 cut(s)	363, 377, 1177, 1200
TseI	GCWGC	8 cut(s)	74, 235, 611, 1340, 1343, 1352, 1502, 1505
Tsp45I	GTSAC	4 cut(s)	363, 377, 1177, 1200
TspDTI	ATGAA	6 cut(s)	423, 430, 494, 1302, 1320, 1485
TspRI	CASTG	2 cut(s)	1144, 1636
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	4 cut(s)	431, 839, 1236, 1585
XbaI	TCTAGA	1 cut(s)	1091
XmnI	GAANNNNTTC	2 cut(s)	172, 791
XspI	CTAG	4 cut(s)	1011, 1092, 1100, 1664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.