Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

16635126 .. 16636457

Gene Structure 1332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCAGATTATCACAAGACTGATATGCACATTGAGATGTGGAAAACAAAGAAACAAATCAAGGGACTTGAAACTGCGAGGGGGAATGGCACCAGCATGATTTCTCTCATCATTCCTCCTCGTGATCAAATCGCTCGCGTTACTAAGATGTTGGACAATGAGTATGGAACTGCTTCAAATATCAAAAGCAGGGTGAACCGTCAGTCTGTTCTATGCGCAATTAAATCTGCCCAGCAGCGGCTCAAGCTTTATAACAAGGTTCCTCCTAAAGGACTTGTGCTCTATGTTGGAACAATTGTTTCTGAAGACAGGAAGGAAAAGAAGATTACAATCAGTTTTGAGCCTTTCAAGCCCATCAATGTGTCTATGTACCTCTGTGACAACAAGTTCCATGTTGAAGCTCTTAATGAACTATTAGAATCTGATGAGAAATTTGGTTTCATTGTCATAGATGGTCATGGTACTCTTTTAGGGACATTGAGTGGTAACACGAGGAAGGTGCTTCATAACTATACGGTTGACCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTTCGATTCGCTCGTCTTGGAGAGGAGGCACGCCACAACTATGTTACTAAGGCAGCAGAAAATGCTACCAAGCTTTTTATTAACCCTGCCACAAACCAGCCGAATGTTGCAGGACTGATACTGGCAGGATCAGCAGACTTCAAAACTGTGCTTAGTGGTTCAGACAAATTTGATCCACGTCTGCAGGCCAGAATACTGACTGTGGTGAGTGTTCGCTGTGGAGGAGAGAATGGTTTCGATCAGGCTATTGACTTGTCATCGGAGATTCTATCCAATGTGAAATTTGTACAGGAGAAACGCCTGATGGAAAAGTACTTTGAAGAGATTAGATTGGATACAGGAAAGTATGTTTTTGGTTTAGATGATACACTAAAAGCTTTGGAGAGAGGTGCTGTGAAGATACTTATCGTGTCAGAAAGCCTGGAAATCAATAGGTATGTGATGAAAAACTCTAGTACTGGTGAGGTTGTCGTCAAGCATCTTAACAAAGAGCAGGAAAATGATAAGAGCAACTTTTGGGATTCTGCCAACTCCAGAGAACTAGATATTCAGGACAAGATGTCATTGTTGGAGTGGTTTACTGACGAGTACAAGGGGTTTGGTTGTACTCTTGAGATTGTCACCAACAAATCACAAGAGGGGTCACATTTCTGCCGAGGTTTTGGGGGCATTGGAGGAATTCTCCGCTACCAGCTTGATATGAGATCATTTGATGAGTTTTCTGATGATGAAGAAGATTACGACGATGGAGACGTTTCTGATGATGCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

444

Amino Acids

49.87

Weight (kDa)

6.21

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	17 - 139	2e-51	eRF1 domain 1
eRF1_2	PF03464	144 - 277	6.1e-34	eRF1 domain 2
eRF1_3	PF03465	281 - 418	6.7e-30	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
Acc16I	TGCGCA	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	138
AciI	CCGC	2 cut(s)	238, 1243
AclWI	GGATC	2 cut(s)	694, 725
AcsI	RAATTY	4 cut(s)	431, 725, 839, 1236
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	7 cut(s)	371, 463, 846, 872, 1015, 1148, 1165
AfiI	CCNNNNNNNGG	2 cut(s)	237, 269
AgsI	TTSAA	6 cut(s)	71, 177, 349, 398, 700, 878
AhdI	GACNNNNNGTC	1 cut(s)	1117
AjiI	CACGTC	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	978
AluBI	AGCT	6 cut(s)	247, 401, 557, 631, 935, 1252
AluI	AGCT	6 cut(s)	247, 401, 557, 631, 935, 1252
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	1302
AlwI	GGATC	2 cut(s)	694, 725
AoxI	GGCC	1 cut(s)	744
ApeKI	GCWGC	2 cut(s)	235, 611
ApoI	RAATTY	4 cut(s)	431, 725, 839, 1236
Asp700I	GAANNNNTTC	2 cut(s)	172, 791
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	4 cut(s)	205, 775, 1031, 1171
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	2 cut(s)	120, 490
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	247, 623
BccI	CCATC	4 cut(s)	362, 446, 856, 1298
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	1 cut(s)	980
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	1302
BfaI	CTAG	2 cut(s)	1011, 1100
BfmI	CTRYAG	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	886
BisI	GCNGC	3 cut(s)	236, 239, 612
BlsI	GCNGC	3 cut(s)	237, 240, 613
BmcAI	AGTACT	2 cut(s)	872, 1015
Bme1390I	CCNGG	1 cut(s)	980
BmeRI	GACNNNNNGTC	1 cut(s)	1117
BmgBI	CACGTC	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	91, 261
BmrFI	CCNGG	1 cut(s)	980
BmsI	GCATC	2 cut(s)	1045, 1312
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	1224, 1256
BpmI	CTGGAG	1 cut(s)	1075
BpuEI	CTTGAG	2 cut(s)	227, 1190
BsaBI	GATNNNNATC	2 cut(s)	329, 962
BsaJI	CCNNGG	1 cut(s)	1213
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 269
Bse1I	ACTGG	2 cut(s)	684, 1021
Bse8I	GATNNNNATC	2 cut(s)	329, 962
BseBI	CCWGG	1 cut(s)	980
BseDI	CCNNGG	1 cut(s)	1213
BseJI	GATNNNNATC	2 cut(s)	329, 962
BseLI	CCNNNNNNNGG	2 cut(s)	237, 269
BseNI	ACTGG	2 cut(s)	684, 1021
BseRI	GAGGAG	4 cut(s)	108, 558, 596, 795
BseXI	GCAGC	2 cut(s)	247, 623
BseYI	CCCAGC	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	746
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	78, 487
BslI	CCNNNNNNNGG	2 cut(s)	237, 269
BsmAI	GTCTC	1 cut(s)	1302
BsmBI	CGTCTC	1 cut(s)	1302
BsmFI	GGGAC	2 cut(s)	78, 487
BsnI	GGCC	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	5 cut(s)	124, 686, 730, 796, 1262
BspACI	CCGC	2 cut(s)	238, 1243
BspANI	GGCC	1 cut(s)	746
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	91, 261
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	2 cut(s)	694, 725
BspQI	GCTCTTC	1 cut(s)	564
BspT107I	GGYRCC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	2 cut(s)	684, 1021
BssECI	CCNNGG	1 cut(s)	1213
BssMI	GATC	5 cut(s)	124, 686, 730, 796, 1262
BssSI	CACGAG	2 cut(s)	120, 490
Bst2BI	CACGAG	2 cut(s)	120, 490
Bst2UI	CCWGG	1 cut(s)	980
Bst4CI	ACNGT	4 cut(s)	200, 517, 706, 760
Bst6I	CTCTTC	3 cut(s)	535, 564, 873
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstAUI	TGTACA	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	136, 589, 744
BstDEI	CTNAG	3 cut(s)	144, 606, 710
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	5 cut(s)	127, 689, 733, 799, 1265
BstMAI	GTCTC	1 cut(s)	1302
BstMBI	GATC	5 cut(s)	124, 686, 730, 796, 1262
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
BstNI	CCWGG	1 cut(s)	980
BstSCI	CCNGG	1 cut(s)	978
BstSFI	CTRYAG	1 cut(s)	740
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	247, 623
BstV2I	GAAGAC	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	746
BtrI	CACGTC	1 cut(s)	737
Cac8I	GCNNGC	3 cut(s)	136, 589, 744
CfoI	GCGC	1 cut(s)	218
Csp6I	GTAC	7 cut(s)	370, 462, 845, 871, 1014, 1147, 1164
CviAII	CATG	4 cut(s)	97, 392, 458, 536
CviQI	GTAC	7 cut(s)	370, 462, 845, 871, 1014, 1147, 1164
DdeI	CTNAG	3 cut(s)	144, 606, 710
DpnI	GATC	5 cut(s)	126, 688, 732, 798, 1264
DpnII	GATC	5 cut(s)	124, 686, 730, 796, 1262
DriI	GACNNNNNGTC	1 cut(s)	1117
Eam1104I	CTCTTC	3 cut(s)	535, 564, 873
Eam1105I	GACNNNNNGTC	1 cut(s)	1117
EarI	CTCTTC	3 cut(s)	535, 564, 873
Eco57I	CTGAAG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	1236
EcoRII	CCWGG	1 cut(s)	978
Esp3I	CGTCTC	1 cut(s)	1302
FaeI	CATG	4 cut(s)	100, 395, 461, 539
FalI	AAGNNNNNCTT	2 cut(s)	1055, 1087
FaqI	GGGAC	2 cut(s)	78, 487
FatI	CATG	4 cut(s)	96, 391, 457, 535
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	236, 239, 612
Fsp4HI	GCNGC	3 cut(s)	236, 239, 612
FspBI	CTAG	2 cut(s)	1011, 1100
FspI	TGCGCA	1 cut(s)	217
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	236, 239, 612
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	1075
HaeIII	GGCC	1 cut(s)	746
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	100, 395, 461, 539
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	3 cut(s)	245, 629, 933
HinfI	GANTC	4 cut(s)	419, 564, 823, 1079
HphI	GGTGA	4 cut(s)	205, 775, 1031, 1171
Hpy166II	GTNNAC	3 cut(s)	196, 520, 1137
Hpy188I	TCNGA	7 cut(s)	304, 424, 721, 820, 973, 1282, 1318
Hpy188III	TCNNGA	4 cut(s)	122, 1092, 1109, 1169
Hpy8I	GTNNAC	3 cut(s)	196, 520, 1137
Hpy99I	CGWCG	1 cut(s)	1304
HpyAV	CCTTC	2 cut(s)	307, 490
HpyCH4III	ACNGT	4 cut(s)	200, 517, 706, 760
HpyCH4IV	ACGT	2 cut(s)	736, 1311
HpyCH4V	TGCA	3 cut(s)	28, 668, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
HpyF3I	CTNAG	3 cut(s)	144, 606, 710
HpySE526I	ACGT	2 cut(s)	736, 1311
Hsp92II	CATG	4 cut(s)	100, 395, 461, 539
HspAI	GCGC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	124, 686, 730, 796, 1262
LguI	GCTCTTC	1 cut(s)	564
Lsp1109I	GCAGC	2 cut(s)	247, 623
LweI	GCATC	2 cut(s)	1045, 1312
MaeI	CTAG	2 cut(s)	1011, 1100
MaeII	ACGT	2 cut(s)	736, 1311
MaeIII	GTNAC	6 cut(s)	139, 377, 485, 601, 1177, 1200
MalI	GATC	5 cut(s)	126, 688, 732, 798, 1264
MboI	GATC	5 cut(s)	124, 686, 730, 796, 1262
MboII	GAAGA	8 cut(s)	317, 334, 551, 552, 890, 967, 1301, 1304
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	6 cut(s)	219, 294, 431, 725, 839, 1236
MmeI	TCCRAC	3 cut(s)	132, 268, 1107
MroXI	GAANNNNTTC	2 cut(s)	172, 791
MseI	TTAA	4 cut(s)	222, 405, 639, 1041
MslI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
MspA1I	CMGCKG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	980
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	980
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
NdeII	GATC	5 cut(s)	124, 686, 730, 796, 1262
NlaIII	CATG	4 cut(s)	100, 395, 461, 539
NlaIV	GGNNCC	2 cut(s)	91, 261
NmeAIII	GCCGAG	1 cut(s)	1238
NmuCI	GTSAC	3 cut(s)	377, 1177, 1200
NsbI	TGCGCA	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	2 cut(s)	568, 1308
PdmI	GAANNNNTTC	2 cut(s)	172, 791
PfeI	GAWTC	4 cut(s)	419, 564, 823, 1079
PkrI	GCNGC	3 cut(s)	237, 240, 613
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	978
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	978
PspN4I	GGNNCC	2 cut(s)	91, 261
PstI	CTGCAG	1 cut(s)	744
RsaI	GTAC	7 cut(s)	371, 463, 846, 872, 1015, 1148, 1165
RsaNI	GTAC	7 cut(s)	370, 462, 845, 871, 1014, 1147, 1164
RseI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	4 cut(s)	222, 405, 639, 1041
SatI	GCNGC	3 cut(s)	236, 239, 612
Sau3AI	GATC	5 cut(s)	124, 686, 730, 796, 1262
ScaI	AGTACT	2 cut(s)	872, 1015
ScrFI	CCNGG	1 cut(s)	980
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	1045, 1312
SfcI	CTRYAG	1 cut(s)	740
SmiMI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
SmlI	CTYRAG	2 cut(s)	242, 1169
SmoI	CTYRAG	2 cut(s)	242, 1169
Sse9I	AATT	6 cut(s)	219, 294, 431, 725, 839, 1236
SsiI	CCGC	2 cut(s)	238, 1243
SspMI	CTAG	2 cut(s)	1011, 1100
StyD4I	CCNGG	1 cut(s)	978
TaaI	ACNGT	4 cut(s)	200, 517, 706, 760
TaiI	ACGT	2 cut(s)	739, 1314
TaqI	TCGA	2 cut(s)	562, 795
TasI	AATT	6 cut(s)	219, 294, 431, 725, 839, 1236
TatI	WGTACW	5 cut(s)	844, 870, 1013, 1146, 1163
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	4 cut(s)	419, 564, 823, 1079
Tru1I	TTAA	4 cut(s)	222, 405, 639, 1041
Tru9I	TTAA	4 cut(s)	222, 405, 639, 1041
TseFI	GTSAC	3 cut(s)	377, 1177, 1200
TseI	GCWGC	2 cut(s)	235, 611
Tsp45I	GTSAC	3 cut(s)	377, 1177, 1200
TspDTI	ATGAA	5 cut(s)	423, 430, 494, 1016, 1302
XagI	CCTNNNNNAGG	1 cut(s)	267
XapI	RAATTY	4 cut(s)	431, 725, 839, 1236
XmnI	GAANNNNTTC	2 cut(s)	172, 791
XspI	CTAG	2 cut(s)	1011, 1100
ZrmI	AGTACT	2 cut(s)	872, 1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.