MD07G1033800.v1.1
ERF Family

Eukaryotic peptide chain release factor subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
2762405 .. 2764276
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1033800.v1.1.491

Sequence Viewer

Length: 1641 bp
ATGGCCGATGCTCATGAGACTCCTGATAAGAACATTGAGCTATGGAGAATTAAGAAACTGATCAAGGGACTTGAAGCTGCAAGGGGCAATGGCACCAGTATGATTTCTCTCATCATTCCTCCCCGTGATAAAATACCTCGAGTTACGAAGATGCTTAGCGATGAATTAGGATCAGCTTCGAATATCAAAAGTAGGGTGAATCGTCAGTCTGTTCAAGGTGCAATTACATCCGCTCAGCAGCGGCTCAAGCTCTATAACAAGGTTCCTCCAAATGGCCTTGCTCTGTTTACAGGAACTATTGCTACCGAAGATGGCAATGAAAAGAAGGTCACGTTTGATTTCGAGCCTTTGAAGCCGATCAATGTGTCTCTTTACCTCTGTGACAACAAGTTCCATACCGAAGCTCTGAATGAACTCTTAGAATGTGGTGAAAAATTTGGTTTCATTATCATGGATGGTAAGGGGACTCTTTTCGGGACATTGAGTGGTAACGTAAGGGAGGTTCTTCAGAAGTATCGCATTGACCTGCCAAAGAAACACGGAAGAGGTGGGCAATCAGCTCTTCGATTTGCTCGCCTTGGAGAGGAAGCACGCGACAACCATGTTATCAAGACAGCAGAGCTTGCCAAAAGTTTGTTTATTAATCCAGCCACTAACCAGCCCAATGTTAAAGGATTAATACTGGCTGGATCAGCTGATTTCAAAACTAAGCTTAGTGAGTCGGGTAAGTTTGATCCCCGTCTGCAGGCGAAAATACTGAAAGTGGTGGATATTTCTTATGGAGGAGAGGATGGATTCAATCAGGCTATTAAGTTGTCGGCCGAATTTCTGTCCAATGTGAAATTTATACAGGAGCAGATCTTATTAGGAAAATACTTTAAAGAGGTTAATGAGGATACAGGAAAGTATGTTGTTGGCGTAGAGGACACGCTAAAGGCTTTGGAGATGGGAGCAATTAAGACACTTATTGTGTGGGAAAATCTGGAGATCGATAGGTATGTGTTAAAGAATTCAAAGACTGATGAGATTGTTGTGAAACATTTCGACAAGGAGCAGGAAAAAAATATGAGCAACTTTCAAGATCCTGCCAGCCAAGGAGAGCTAAAGATTCAGGAGAAGATGTCACTGTTGGAATGGTTTGCTGATGAGTACAAGCGTTTTGGTTGTGCTCTTGAGTTTGTCACCAACAAATCACAAGAGGGGTCACAATTCTGTCGAGGTTTTGGGGGTATTGGAGGGCTTCTCCGCTACCAGCTTGATATAAGGTCGTTCGACGAGTTTGGTGATGATGAAGTTGATGAGGATGGAGAAGTTTACGATGAAAGCAGGGGTGAAAAAGCCTGCACCAGCGCGCATGGGGCAGTGGCGGCTGCTGCTGCTCCTGAGCGGTGCTCCAAAACAATTTCAGGCTCGACCAAGGACATTGCATTATCATCTGATTCCGAAAGGCTTACTGTGGTTATTACATCTGGGTCACAAAGAGGTGGGGGTGAAAAAGCCTGCACCAAAGTTACAACTGCTGCTCCGGAGAAGTGCTCCAAAAAATTCTCAGCCCTGACCAAGGACACTACATTGTTATCTGATCCTGAAAGGCTTGATGTGGCGATCATTTCTGGATTACAAACGGGCTGGAGAGACTGA

Protein Analysis

547

Amino Acids

60.21

Weight (kDa)

6.22

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eRF1_1 PF03463 18 - 140 1.3e-50 eRF1 domain 1
eRF1_2 PF03464 145 - 278 5e-36 eRF1 domain 2
eRF1_3 PF03465 282 - 419 3.2e-29 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 2 cut(s) 233, 1387
AccII CGCG 2 cut(s) 594, 1352
AccIII TCCGGA 1 cut(s) 1525
AciI CCGC 5 cut(s) 231, 241, 1246, 1367, 1387
AclWI GGATC 5 cut(s) 178, 697, 728, 1076, 1577
AcoI YGGCCR 2 cut(s) 3, 819
AcsI RAATTY 5 cut(s) 434, 824, 842, 1009, 1544
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 1 cut(s) 1151
AfiI CCNNNNNNNGG 4 cut(s) 272, 583, 745, 1561
AgsI TTSAA 7 cut(s) 74, 215, 352, 703, 799, 1014, 1079
Alw21I GWGCWC 3 cut(s) 1171, 1394, 1538
Alw26I GTCTC 3 cut(s) 11, 372, 1629
AlwI GGATC 5 cut(s) 178, 697, 728, 1076, 1577
Ama87I CYCGRG 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 1525
AoxI GGCC 3 cut(s) 3, 274, 819
ApeKI GCWGC 6 cut(s) 77, 238, 1370, 1373, 1376, 1520
ApoI RAATTY 5 cut(s) 434, 824, 842, 1009, 1544
AseI ATTAAT 2 cut(s) 642, 677
Asp700I GAANNNNTTC 1 cut(s) 1040
AspLEI GCGC 2 cut(s) 1352, 1354
AsuHPI GGTGA 6 cut(s) 208, 440, 1174, 1295, 1343, 1502
AsuII TTCGAA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 138
BanI GGYRCC 1 cut(s) 92
Bbv12I GWGCWC 3 cut(s) 1171, 1394, 1538
BbvI GCAGC 6 cut(s) 64, 250, 1357, 1360, 1363, 1507
BccI CCATC 5 cut(s) 305, 449, 785, 940, 1298
BciVI GTATCC 1 cut(s) 889
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 3 cut(s) 11, 372, 1629
BfmI CTRYAG 1 cut(s) 743
BfuAI ACCTGC 1 cut(s) 534
BfuI GTATCC 1 cut(s) 889
BglII AGATCT 1 cut(s) 858
BisI GCNGC 8 cut(s) 78, 239, 242, 1368, 1371, 1374, 1377, 1521
BlpI GCTNAGC 2 cut(s) 155, 234
BlsI GCNGC 8 cut(s) 79, 240, 243, 1369, 1372, 1375, 1378, 1522
BmeT110I CYCGRG 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 94, 264
BmsI GCATC 1 cut(s) 141
BplI GAGNNNNNCTC 6 cut(s) 1227, 1259, 1376, 1408, 1520, 1552
BpmI CTGGAG 1 cut(s) 1004
Bpu10I CCTNAGC 1 cut(s) 1383
Bpu1102I GCTNAGC 2 cut(s) 155, 234
Bpu14I TTCGAA 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 230, 1193
Bsa29I ATCGAT 1 cut(s) 990
BsaJI CCNNGG 4 cut(s) 577, 1093, 1416, 1560
BsaWI WCCGGW 1 cut(s) 1525
BsaXI ACNNNNNCTCC 4 cut(s) 1106, 1136, 1507, 1537
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 583, 745, 1561
Bse1I ACTGG 2 cut(s) 96, 687
Bse3DI GCAATG 3 cut(s) 94, 322, 1422
BseAI TCCGGA 1 cut(s) 1525
BseCI ATCGAT 1 cut(s) 990
BseDI CCNNGG 4 cut(s) 577, 1093, 1416, 1560
BseGI GGATG 4 cut(s) 227, 460, 796, 1309
BseLI CCNNNNNNNGG 4 cut(s) 272, 583, 745, 1561
BseMI GCAATG 3 cut(s) 94, 322, 1422
BseMII CTCAG 3 cut(s) 248, 1374, 1563
BseNI ACTGG 2 cut(s) 96, 687
BsePI GCGCGC 1 cut(s) 1350
BseRI GAGGAG 1 cut(s) 798
BseX3I CGGCCG 1 cut(s) 819
BseXI GCAGC 6 cut(s) 64, 250, 1357, 1360, 1363, 1507
BsgI GTGCAG 2 cut(s) 1327, 1486
Bsh1236I CGCG 2 cut(s) 594, 1352
Bsh1285I CGRYCG 1 cut(s) 822
BshFI GGCC 3 cut(s) 5, 276, 821
BshNI GGYRCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 990
BsiEI CGRYCG 1 cut(s) 822
BsiHKAI GWGCWC 3 cut(s) 1171, 1394, 1538
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 1526
BslFI GGGAC 3 cut(s) 81, 478, 490
BslI CCNNNNNNNGG 4 cut(s) 272, 583, 745, 1561
BsmAI GTCTC 3 cut(s) 11, 372, 1629
BsmFI GGGAC 3 cut(s) 81, 478, 490
BsnI GGCC 3 cut(s) 5, 276, 821
BsoBI CYCGRG 1 cut(s) 138
Bsp119I TTCGAA 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 1171, 1394, 1538
Bsp13I TCCGGA 1 cut(s) 1525
Bsp1720I GCTNAGC 2 cut(s) 155, 234
BspACI CCGC 5 cut(s) 231, 241, 1246, 1367, 1387
BspANI GGCC 3 cut(s) 5, 276, 821
BspCNI CTCAG 3 cut(s) 247, 1375, 1562
BspDI ATCGAT 1 cut(s) 990
BspEI TCCGGA 1 cut(s) 1525
BspFNI CGCG 2 cut(s) 594, 1352
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 94, 264
BspMAI CTGCAG 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 5 cut(s) 178, 697, 728, 1076, 1577
BspQI GCTCTTC 1 cut(s) 567
BspT104I TTCGAA 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 2 cut(s) 233, 1387
BsrDI GCAATG 3 cut(s) 94, 322, 1422
BsrI ACTGG 2 cut(s) 96, 687
BssECI CCNNGG 4 cut(s) 577, 1093, 1416, 1560
BssHII GCGCGC 1 cut(s) 1350
BssT1I CCWWGG 4 cut(s) 577, 1093, 1416, 1560
Bst4CI ACNGT 2 cut(s) 1128, 1456
Bst6I CTCTTC 2 cut(s) 538, 567
BstAPI GCANNNNNTGC 1 cut(s) 623
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 8 cut(s) 574, 592, 624, 747, 1090, 1342, 1352, 1501
BstDEI CTNAG 7 cut(s) 155, 234, 418, 708, 713, 1383, 1549
BstENI CCTNNNNNAGG 2 cut(s) 581, 1559
BstF5I GGATG 4 cut(s) 227, 460, 796, 1309
BstFNI CGCG 2 cut(s) 594, 1352
BstHHI GCGC 2 cut(s) 1352, 1354
BstMAI GTCTC 3 cut(s) 11, 372, 1629
BstMCI CGRYCG 1 cut(s) 822
BstMWI GCNNNNNNNGC 8 cut(s) 247, 352, 623, 692, 1358, 1367, 1373, 1376
BstSFI CTRYAG 1 cut(s) 743
BstUI CGCG 2 cut(s) 594, 1352
BstV1I GCAGC 6 cut(s) 64, 250, 1357, 1360, 1363, 1507
BstX2I RGATCY 2 cut(s) 858, 1081
BstYI RGATCY 2 cut(s) 858, 1081
BstZI CGGCCG 1 cut(s) 819
Bsu15I ATCGAT 1 cut(s) 990
BsuI GTATCC 1 cut(s) 889
BsuRI GGCC 3 cut(s) 5, 276, 821
BsuTUI ATCGAT 1 cut(s) 990
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 4 cut(s) 227, 460, 796, 1309
BtsI GCAGTG 1 cut(s) 1368
BtsIMutI CAGTG 2 cut(s) 1124, 1368
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 8 cut(s) 574, 592, 624, 747, 1090, 1342, 1352, 1501
CciI TCATGA 1 cut(s) 13
CfoI GCGC 2 cut(s) 1352, 1354
ClaI ATCGAT 1 cut(s) 990
Csp6I GTAC 1 cut(s) 1150
CviAII CATG 4 cut(s) 14, 451, 602, 1355
CviQI GTAC 1 cut(s) 1150
DdeI CTNAG 7 cut(s) 155, 234, 418, 708, 713, 1383, 1549
DraI TTTAAA 1 cut(s) 880
EaeI YGGCCR 2 cut(s) 3, 819
EagI CGGCCG 1 cut(s) 819
Eam1104I CTCTTC 2 cut(s) 538, 567
EarI CTCTTC 2 cut(s) 538, 567
EclXI CGGCCG 1 cut(s) 819
Eco130I CCWWGG 4 cut(s) 577, 1093, 1416, 1560
Eco52I CGGCCG 1 cut(s) 819
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 138
EcoNI CCTNNNNNAGG 2 cut(s) 581, 1559
EcoRI GAATTC 1 cut(s) 1009
EcoT14I CCWWGG 4 cut(s) 577, 1093, 1416, 1560
ErhI CCWWGG 4 cut(s) 577, 1093, 1416, 1560
FaeI CATG 4 cut(s) 17, 454, 605, 1358
FaqI GGGAC 3 cut(s) 81, 478, 490
FatI CATG 4 cut(s) 13, 450, 601, 1354
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 8 cut(s) 78, 239, 242, 1368, 1371, 1374, 1377, 1521
FokI GGATG 4 cut(s) 214, 467, 803, 1316
Fsp4HI GCNGC 8 cut(s) 78, 239, 242, 1368, 1371, 1374, 1377, 1521
GlaI GCGC 2 cut(s) 1351, 1353
GluI GCNGC 8 cut(s) 78, 239, 242, 1368, 1371, 1374, 1377, 1521
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 3 cut(s) 5, 276, 821
HapII CCGG 1 cut(s) 1526
HhaI GCGC 2 cut(s) 1352, 1354
Hin1II CATG 4 cut(s) 17, 454, 605, 1358
Hin6I GCGC 2 cut(s) 1350, 1352
HinP1I GCGC 2 cut(s) 1350, 1352
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 7 cut(s) 19, 199, 466, 719, 795, 1108, 1439
HpaII CCGG 1 cut(s) 1526
HphI GGTGA 6 cut(s) 208, 440, 1174, 1295, 1343, 1502
Hpy166II GTNNAC 2 cut(s) 288, 1315
Hpy188I TCNGA 5 cut(s) 408, 510, 1438, 1444, 1582
Hpy8I GTNNAC 2 cut(s) 288, 1315
Hpy99I CGWCG 1 cut(s) 1277
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 1128, 1456
HpyCH4IV ACGT 2 cut(s) 332, 492
HpyCH4V TGCA 6 cut(s) 80, 221, 745, 1344, 1427, 1503
HpyF10VI GCNNNNNNNGC 8 cut(s) 247, 352, 623, 692, 1358, 1367, 1373, 1376
HpyF3I CTNAG 7 cut(s) 155, 234, 418, 708, 713, 1383, 1549
HpySE526I ACGT 2 cut(s) 332, 492
Hsp92II CATG 4 cut(s) 17, 454, 605, 1358
HspAI GCGC 2 cut(s) 1350, 1352
Kpn2I TCCGGA 1 cut(s) 1525
Ksp22I TGATCA 1 cut(s) 60
LguI GCTCTTC 1 cut(s) 567
LmnI GCTCC 7 cut(s) 853, 950, 1051, 1384, 1397, 1528, 1541
Lsp1109I GCAGC 6 cut(s) 64, 250, 1357, 1360, 1363, 1507
LweI GCATC 1 cut(s) 141
MaeII ACGT 2 cut(s) 332, 492
MaeIII GTNAC 9 cut(s) 142, 328, 380, 488, 1122, 1180, 1203, 1473, 1510
MbiI CCGCTC 2 cut(s) 233, 1387
MboII GAAGA 6 cut(s) 160, 320, 497, 554, 555, 1129
MflI RGATCY 2 cut(s) 858, 1081
MhlI GDGCHC 3 cut(s) 1171, 1394, 1538
MlyI GAGTC 3 cut(s) 13, 460, 728
MmeI TCCRAC 1 cut(s) 1110
MroI TCCGGA 1 cut(s) 1525
MroXI GAANNNNTTC 1 cut(s) 1040
MseI TTAA 9 cut(s) 51, 642, 669, 677, 810, 879, 888, 957, 1004
MslI CAYNNNNRTG 2 cut(s) 98, 449
MspA1I CMGCKG 2 cut(s) 241, 695
MspI CCGG 1 cut(s) 1526
MvnI CGCG 2 cut(s) 594, 1352
MwoI GCNNNNNNNGC 8 cut(s) 247, 352, 623, 692, 1358, 1367, 1373, 1376
NlaIII CATG 4 cut(s) 17, 454, 605, 1358
NlaIV GGNNCC 2 cut(s) 94, 264
NmuCI GTSAC 6 cut(s) 328, 380, 1122, 1180, 1203, 1473
NspV TTCGAA 1 cut(s) 179
PaeR7I CTCGAG 1 cut(s) 138
PagI TCATGA 1 cut(s) 13
PauI GCGCGC 1 cut(s) 1350
PciSI GCTCTTC 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 1040
PfeI GAWTC 4 cut(s) 199, 795, 1108, 1439
PkrI GCNGC 8 cut(s) 79, 240, 243, 1369, 1372, 1375, 1378, 1522
PleI GAGTC 3 cut(s) 13, 460, 727
PpsI GAGTC 3 cut(s) 13, 460, 727
PshBI ATTAAT 2 cut(s) 642, 677
PspN4I GGNNCC 2 cut(s) 94, 264
PspXI VCTCGAGB 1 cut(s) 138
PsrI GAACNNNNNNTAC 4 cut(s) 286, 318, 486, 518
PstI CTGCAG 1 cut(s) 747
PsuI RGATCY 2 cut(s) 858, 1081
PteI GCGCGC 1 cut(s) 1350
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 1 cut(s) 1151
RsaNI GTAC 1 cut(s) 1150
RseI CAYNNNNRTG 2 cut(s) 98, 449
SapI GCTCTTC 1 cut(s) 567
SaqAI TTAA 9 cut(s) 51, 642, 669, 677, 810, 879, 888, 957, 1004
SatI GCNGC 8 cut(s) 78, 239, 242, 1368, 1371, 1374, 1377, 1521
SchI GAGTC 3 cut(s) 13, 460, 728
SduI GDGCHC 3 cut(s) 1171, 1394, 1538
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 743
Sfr274I CTCGAG 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 98, 449
SmlI CTYRAG 3 cut(s) 138, 245, 1172
SmoI CTYRAG 3 cut(s) 138, 245, 1172
SsiI CCGC 5 cut(s) 231, 241, 1246, 1367, 1387
StyI CCWWGG 4 cut(s) 577, 1093, 1416, 1560
TaaI ACNGT 2 cut(s) 1128, 1456
TaiI ACGT 2 cut(s) 335, 495
TaqI TCGA 9 cut(s) 139, 179, 342, 565, 990, 1044, 1216, 1272, 1412
TatI WGTACW 1 cut(s) 1149
TauI GCSGC 2 cut(s) 244, 1370
TfiI GAWTC 4 cut(s) 199, 795, 1108, 1439
Tru1I TTAA 9 cut(s) 51, 642, 669, 677, 810, 879, 888, 957, 1004
Tru9I TTAA 9 cut(s) 51, 642, 669, 677, 810, 879, 888, 957, 1004
TscAI CASTG 2 cut(s) 1131, 1368
TseFI GTSAC 6 cut(s) 328, 380, 1122, 1180, 1203, 1473
TseI GCWGC 6 cut(s) 77, 238, 1370, 1373, 1376, 1520
Tsp45I GTSAC 6 cut(s) 328, 380, 1122, 1180, 1203, 1473
TspDTI ATGAA 6 cut(s) 177, 333, 426, 433, 1305, 1335
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 2 cut(s) 1131, 1368
VspI ATTAAT 2 cut(s) 642, 677
XagI CCTNNNNNAGG 2 cut(s) 581, 1559
XapI RAATTY 5 cut(s) 434, 824, 842, 1009, 1544
XhoI CTCGAG 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.